RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 ELL3Q9HB65 397 aaPredicted RBP8.66□□□□□ -1.02
SKA1-204ENST00000488454 PCDHB16Q9NRJ7 776 aa8.66□□□□□ -1.02
SKA1-204ENST00000488454 TXNL4BQ9NX01 149 aaKnown RBP8.66□□□□□ -1.02
SKA1-204ENST00000488454 RASL12Q9NYN1 266 aa8.66□□□□□ -1.02
SKA1-204ENST00000488454 DNAJB11Q9UBS4 358 aa8.66□□□□□ -1.02
SKA1-204ENST00000488454 ING4Q9UNL4 249 aa8.66□□□□□ -1.02
SKA1-204ENST00000488454 WIPI2Q9Y4P8 454 aa8.66□□□□□ -1.02
SKA1-204ENST00000488454 PPIAL4AQ9Y536 164 aa8.66□□□□□ -1.02
SKA1-204ENST00000488454 POLQO75417 2590 aa8.65□□□□□ -1.02
SKA1-204ENST00000488454 IGKV1-27A0A075B6S5 117 aa8.65□□□□□ -1.02
SKA1-204ENST00000488454 IGHV4-30-2A0A087WSY4 118 aa8.65□□□□□ -1.02
SKA1-204ENST00000488454 TRAV1-2A0A0B4J238 106 aa8.65□□□□□ -1.02
SKA1-204ENST00000488454 LGALS8O00214 317 aa8.65□□□□□ -1.02
SKA1-204ENST00000488454 SPRY1O43609 319 aaPredicted RBP8.65□□□□□ -1.02
SKA1-204ENST00000488454 SYNGR1O43759 233 aa8.65□□□□□ -1.02
SKA1-204ENST00000488454 RHBDL1O75783 438 aa8.65□□□□□ -1.02
SKA1-204ENST00000488454 NXPH2O95156 264 aa8.65□□□□□ -1.02
SKA1-204ENST00000488454 ZNF205O95201 554 aa8.65□□□□□ -1.02
SKA1-204ENST00000488454 LHBP01229 141 aa8.65□□□□□ -1.02
SKA1-204ENST00000488454 TFAP2AP05549 437 aa8.65□□□□□ -1.02
SKA1-204ENST00000488454 HEXAP06865 529 aa8.65□□□□□ -1.02
SKA1-204ENST00000488454 ACAA1P09110 424 aaPredicted RBP8.65□□□□□ -1.02
SKA1-204ENST00000488454 MPZP25189 248 aa8.65□□□□□ -1.02
SKA1-204ENST00000488454 MDH2P40926 338 aaKnown RBP8.65□□□□□ -1.02
SKA1-204ENST00000488454 PTGFRP43088 359 aa8.65□□□□□ -1.02
SKA1-204ENST00000488454 NR4A2P43354 598 aa8.65□□□□□ -1.02
SKA1-204ENST00000488454 SFRP4Q6FHJ7 346 aaPredicted RBP8.65□□□□□ -1.02
SKA1-204ENST00000488454 CALHM1Q8IU99 346 aa8.65□□□□□ -1.02
SKA1-204ENST00000488454 Q8IYB0 196 aa8.65□□□□□ -1.02
SKA1-204ENST00000488454 SAXO1Q8IYX7 474 aa8.65□□□□□ -1.02
SKA1-204ENST00000488454 MUC20Q8N307 709 aaPredicted RBP8.65□□□□□ -1.02
SKA1-204ENST00000488454 GCSAMQ8N6F7 178 aa8.65□□□□□ -1.02
SKA1-204ENST00000488454 POC1AQ8NBT0 407 aa8.65□□□□□ -1.02
SKA1-204ENST00000488454 OR5D18Q8NGL1 313 aa8.65□□□□□ -1.02
SKA1-204ENST00000488454 SLAMF9Q96A28 289 aa8.65□□□□□ -1.02
SKA1-204ENST00000488454 TMIGD2Q96BF3 282 aa8.65□□□□□ -1.02
SKA1-204ENST00000488454 CEP19Q96LK0 163 aa8.65□□□□□ -1.02
SKA1-204ENST00000488454 UQCC2Q9BRT2 126 aa8.65□□□□□ -1.02
SKA1-204ENST00000488454 FUNDC2Q9BWH2 189 aa8.65□□□□□ -1.02
SKA1-204ENST00000488454 BPESC1Q9GZL8 116 aa8.65□□□□□ -1.02
SKA1-204ENST00000488454 DCAF16Q9NXF7 216 aa8.65□□□□□ -1.02
SKA1-204ENST00000488454 PCDHB10Q9UN67 800 aa8.65□□□□□ -1.02
SKA1-204ENST00000488454 NOTCH2Q04721 2471 aa8.65□□□□□ -1.02
SKA1-204ENST00000488454 OOEPA6NGQ2 149 aa8.64□□□□□ -1.03
SKA1-204ENST00000488454 SRRM5B3KS81 715 aa8.64□□□□□ -1.03
SKA1-204ENST00000488454 NDUFA2O43678 99 aa8.64□□□□□ -1.03
SKA1-204ENST00000488454 ANGPTL7O43827 346 aa8.64□□□□□ -1.03
SKA1-204ENST00000488454 NOS1APO75052 506 aaPredicted RBP8.64□□□□□ -1.03
SKA1-204ENST00000488454 FSTL3O95633 263 aa8.64□□□□□ -1.03
SKA1-204ENST00000488454 PGA5P0DJD9 388 aa8.64□□□□□ -1.03
SKA1-204ENST00000488454 MUC1P15941 1255 aaPredicted RBP8.64□□□□□ -1.03
SKA1-204ENST00000488454 USF1P22415 310 aaPredicted RBP8.64□□□□□ -1.03
SKA1-204ENST00000488454 CD80P33681 288 aa8.64□□□□□ -1.03
SKA1-204ENST00000488454 ALDH3B2P48448 385 aa8.64□□□□□ -1.03
SKA1-204ENST00000488454 MTNR1BP49286 362 aa8.64□□□□□ -1.03
SKA1-204ENST00000488454 BMXP51813 675 aa8.64□□□□□ -1.03
SKA1-204ENST00000488454 GPR176Q14439 515 aa8.64□□□□□ -1.03
SKA1-204ENST00000488454 RSU1Q15404 277 aa8.64□□□□□ -1.03
SKA1-204ENST00000488454 SMIM21Q3B7S5 101 aa8.64□□□□□ -1.03
SKA1-204ENST00000488454 FAM201AQ5SY85 155 aa8.64□□□□□ -1.03
SKA1-204ENST00000488454 GPR107Q5VW38 600 aa8.64□□□□□ -1.03
SKA1-204ENST00000488454 FIP1L1Q6UN15 594 aaKnown RBP8.64□□□□□ -1.03
SKA1-204ENST00000488454 DNM1P46Q6ZS02 220 aa8.64□□□□□ -1.03
SKA1-204ENST00000488454 LRRTM1Q86UE6 522 aa8.64□□□□□ -1.03
SKA1-204ENST00000488454 TPRA1Q86W33 373 aa8.64□□□□□ -1.03
SKA1-204ENST00000488454 LRRC28Q86X40 367 aaPredicted RBP8.64□□□□□ -1.03
SKA1-204ENST00000488454 SPICQ8N5J4 248 aa8.64□□□□□ -1.03
SKA1-204ENST00000488454 WFDC11Q8NEX6 87 aa8.64□□□□□ -1.03
SKA1-204ENST00000488454 PXT1Q8NFP0 134 aa8.64□□□□□ -1.03
SKA1-204ENST00000488454 GAL3ST1Q99999 423 aa8.64□□□□□ -1.03
SKA1-204ENST00000488454 REG4Q9BYZ8 158 aa8.64□□□□□ -1.03
SKA1-204ENST00000488454 METTL9Q9H1A3 318 aa8.64□□□□□ -1.03
SKA1-204ENST00000488454 CNTD2Q9H8S5 307 aa8.64□□□□□ -1.03
SKA1-204ENST00000488454 RHOFQ9HBH0 211 aa8.64□□□□□ -1.03
SKA1-204ENST00000488454 PLGRKTQ9HBL7 147 aa8.64□□□□□ -1.03
SKA1-204ENST00000488454 SMURF1Q9HCE7 757 aa8.64□□□□□ -1.03
SKA1-204ENST00000488454 MTCH1Q9NZJ7 389 aa8.64□□□□□ -1.03
SKA1-204ENST00000488454 GLS2Q9UI32 602 aa8.64□□□□□ -1.03
SKA1-204ENST00000488454 AK6Q9Y3D8 172 aaKnown RBP8.64□□□□□ -1.03
SKA1-204ENST00000488454 V9GY05 133 aa8.64□□□□□ -1.03
SKA1-204ENST00000488454 ARID1AO14497 2285 aa8.64□□□□□ -1.03
SKA1-204ENST00000488454 ITPR2Q14571 2701 aa8.63□□□□□ -1.03
SKA1-204ENST00000488454 IGHV3OR15-7A0A075B7D8 119 aa8.63□□□□□ -1.03
SKA1-204ENST00000488454 VWC2LB2RUY7 222 aa8.63□□□□□ -1.03
SKA1-204ENST00000488454 WNT9BO14905 357 aa8.63□□□□□ -1.03
SKA1-204ENST00000488454 NOL3O60936 208 aaKnown RBP8.63□□□□□ -1.03
SKA1-204ENST00000488454 ZNF780AO75290 641 aaPredicted RBP8.63□□□□□ -1.03
SKA1-204ENST00000488454 IGHV2-70P01814 119 aa8.63□□□□□ -1.03
SKA1-204ENST00000488454 CSTBP04080 98 aaKnown RBP8.63□□□□□ -1.03
SKA1-204ENST00000488454 H2AFB1P0C5Y9 115 aa8.63□□□□□ -1.03
SKA1-204ENST00000488454 H2AFB2P0C5Z0 115 aa8.63□□□□□ -1.03
SKA1-204ENST00000488454 RAB3BP20337 219 aa8.63□□□□□ -1.03
SKA1-204ENST00000488454 RBMXP38159 391 aaKnown RBP8.63□□□□□ -1.03
SKA1-204ENST00000488454 OR3A4PP47883 348 aa8.63□□□□□ -1.03
SKA1-204ENST00000488454 ZP1P60852 638 aa8.63□□□□□ -1.03
SKA1-204ENST00000488454 LSM3P62310 102 aaKnown RBP8.63□□□□□ -1.03
SKA1-204ENST00000488454 HNRNPA0Q13151 305 aaKnown RBP8.63□□□□□ -1.03
SKA1-204ENST00000488454 ZMYND11Q15326 602 aa8.63□□□□□ -1.03
SKA1-204ENST00000488454 TMEM155Q4W5P6 130 aa8.63□□□□□ -1.03
SKA1-204ENST00000488454 TEX36Q5VZQ5 186 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms