RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 C15orf41Q9Y2V0 281 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 OR51B2Q9Y5P1 312 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 R4GN34 69 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 TMEM131Q92545 1883 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 CDK5RAP2Q96SN8 1893 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 FOCADQ5VW36 1801 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 BAZ1AQ9NRL2 1556 aaPredicted RBP0.91□□□□□ -2.26
SMC4-220ENST00000488017 MYH1P12882 1939 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 MYH2Q9UKX2 1941 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 PLXNB3Q9ULL4 1909 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 ARHGAP31Q2M1Z3 1444 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 SCAPERQ9BY12 1400 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 CNTLNQ9NXG0 1405 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 CACNA1SQ13698 1873 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 A0A0G2JMP0 313 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 A0A0X1KG70 313 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 SLC22A20A6NK97 555 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 H3BN98 237 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 MYL12BO14950 172 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 POLR3GO15318 223 aaPredicted RBP0.91□□□□□ -2.26
SMC4-220ENST00000488017 YKT6O15498 198 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 NDUFA2O43678 99 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 NDUFS6O75380 124 aaKnown RBP0.91□□□□□ -2.26
SMC4-220ENST00000488017 LCA5LO95447 670 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 NRASP01111 189 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 HRASP01112 189 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 KRASP01116 189 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 IGHV1-46P01743 117 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 OR5AC1P0C628 307 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 SEC11BP0C7V7 166 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 IDO1P14902 403 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 ZNF3P17036 446 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 CFL1P23528 166 aaKnown RBP0.91□□□□□ -2.26
SMC4-220ENST00000488017 RANBP1P43487 201 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 CBX5P45973 191 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 CLDN18P56856 261 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 MTPNP58546 118 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 GRB2P62993 217 aaKnown RBP0.91□□□□□ -2.26
SMC4-220ENST00000488017 RPL18AQ02543 176 aaKnown RBP0.91□□□□□ -2.26
SMC4-220ENST00000488017 BIKQ13323 160 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 SLC9A3R2Q15599 337 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 MOGQ16653 247 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 Q3ZCU0 254 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 PYDC2Q56P42 97 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 LIN9Q5TKA1 542 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 AADACL4Q5VUY2 407 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 DUPD1Q68J44 220 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 ANGPTL8Q6UXH0 198 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 LINC00336Q6ZUF6 198 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 NDUFAF7Q7L592 441 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 ITPRIPQ8IWB1 547 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 C10orf67Q8IYJ2 551 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 LRRC34Q8IZ02 419 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 FAM9CQ8IZT9 166 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 DAW1Q8N136 415 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 RNF10Q8N5U6 811 aaKnown RBP0.91□□□□□ -2.26
SMC4-220ENST00000488017 COMMD1Q8N668 190 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 WDR31Q8NA23 367 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 BBOF1Q8ND07 529 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 OR4D6Q8NGJ1 314 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 OR52K1Q8NGK4 314 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 OR1S1Q8NH92 325 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 CDC26Q8NHZ8 85 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 AGR3Q8TD06 166 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 SFXN5Q8TD22 340 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 ITLN2Q8WWU7 325 aaPredicted RBP0.91□□□□□ -2.26
SMC4-220ENST00000488017 CDKL2Q92772 493 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 NAT6Q93015 286 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 ZNF707Q96C28 371 aaPredicted RBP0.91□□□□□ -2.26
SMC4-220ENST00000488017 PPP1R14BQ96C90 147 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 FXYD5Q96DB9 178 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 YIPF6Q96EC8 236 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 ZBED3Q96IU2 234 aaPredicted RBP0.91□□□□□ -2.26
SMC4-220ENST00000488017 KLF6Q99612 283 aaPredicted RBP0.91□□□□□ -2.26
SMC4-220ENST00000488017 CGREF1Q99674 301 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 CIB1Q99828 191 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 PARD6GQ9BYG4 376 aaPredicted RBP0.91□□□□□ -2.26
SMC4-220ENST00000488017 OR2AG1Q9H205 316 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 ARV1Q9H2C2 271 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 HAUS4Q9H6D7 363 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 TRIM45Q9H8W5 580 aaPredicted RBP0.91□□□□□ -2.26
SMC4-220ENST00000488017 UCK1Q9HA47 277 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 FANCEQ9HB96 536 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 ZNHIT6Q9NWK9 470 aaKnown RBP0.91□□□□□ -2.26
SMC4-220ENST00000488017 STX18Q9P2W9 335 aaKnown RBP0.91□□□□□ -2.26
SMC4-220ENST00000488017 RHBDD3Q9Y3P4 386 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 BZW2Q9Y6E2 419 aaKnown RBP0.91□□□□□ -2.26
SMC4-220ENST00000488017 ENPP4Q9Y6X5 453 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 BCORL1Q5H9F3 1711 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 CDC42BPAQ5VT25 1732 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 RFX7Q2KHR2 1363 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 CACNA1DQ01668 2161 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 KIF20BQ96Q89 1820 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 UHRF1BP1LA0JNW5 1464 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 PTPRFP10586 1907 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 PBRM1Q86U86 1689 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 A0A1B0GUL6 1792 aa0.91□□□□□ -2.26
SMC4-220ENST00000488017 ELP1O95163 1332 aa0.9□□□□□ -2.26
SMC4-220ENST00000488017 TANC1Q9C0D5 1861 aa0.9□□□□□ -2.26
SMC4-220ENST00000488017 SOGA1O94964 1423 aa0.9□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms