RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 SHISA4Q96DD7 197 aa11.97□□□□□ -0.49
COL6A3-209ENST00000472056 NUDT16L1Q9BRJ7 211 aaKnown RBP11.97□□□□□ -0.49
COL6A3-209ENST00000472056 CTAG2O75638 210 aa11.97□□□□□ -0.49
COL6A3-209ENST00000472056 SERF2P84101 59 aa11.97□□□□□ -0.49
COL6A3-209ENST00000472056 C1orf61Q13536 156 aa11.97□□□□□ -0.49
COL6A3-209ENST00000472056 BCORP1Q8N888 145 aa11.97□□□□□ -0.49
COL6A3-209ENST00000472056 UBE2FQ969M7 185 aa11.97□□□□□ -0.49
COL6A3-209ENST00000472056 HIST1H1DP16402 221 aaKnown RBP11.97□□□□□ -0.49
COL6A3-209ENST00000472056 CYB5R2Q6BCY4 276 aa11.97□□□□□ -0.49
COL6A3-209ENST00000472056 SLC39A5Q6ZMH5 540 aa11.97□□□□□ -0.49
COL6A3-209ENST00000472056 C20orf196Q8IYI0 205 aa11.97□□□□□ -0.49
COL6A3-209ENST00000472056 FAM24BQ8N5W8 94 aa11.97□□□□□ -0.49
COL6A3-209ENST00000472056 TOE1Q96GM8 510 aaKnown RBP11.97□□□□□ -0.49
COL6A3-209ENST00000472056 ACACAQ13085 2346 aa11.97□□□□□ -0.49
COL6A3-209ENST00000472056 CORTO00230 105 aa11.97□□□□□ -0.49
COL6A3-209ENST00000472056 CDS2O95674 445 aa11.97□□□□□ -0.49
COL6A3-209ENST00000472056 SCGB1D4Q6XE38 83 aa11.97□□□□□ -0.49
COL6A3-209ENST00000472056 TP53INP2Q8IXH6 220 aa11.97□□□□□ -0.49
COL6A3-209ENST00000472056 GLRA1P23415 457 aa11.96□□□□□ -0.49
COL6A3-209ENST00000472056 INSM2Q96T92 566 aaPredicted RBP11.96□□□□□ -0.49
COL6A3-209ENST00000472056 PECRQ9BY49 303 aa11.96□□□□□ -0.49
COL6A3-209ENST00000472056 HMX2A2RU54 273 aa11.96□□□□□ -0.49
COL6A3-209ENST00000472056 NDUFB7P17568 137 aa11.96□□□□□ -0.49
COL6A3-209ENST00000472056 PRSS50Q9UI38 385 aa11.96□□□□□ -0.49
COL6A3-209ENST00000472056 RGRP47804 291 aa11.96□□□□□ -0.49
COL6A3-209ENST00000472056 HMGA2P52926 109 aa11.96□□□□□ -0.49
COL6A3-209ENST00000472056 ZNF121P58317 390 aaPredicted RBP11.96□□□□□ -0.49
COL6A3-209ENST00000472056 SSX8Q7RTT4 187 aa11.96□□□□□ -0.49
COL6A3-209ENST00000472056 CDCP1Q9H5V8 836 aa11.96□□□□□ -0.49
COL6A3-209ENST00000472056 IL21Q9HBE4 155 aa11.96□□□□□ -0.49
COL6A3-209ENST00000472056 TRBV9A0A0B4J1U6 114 aa11.96□□□□□ -0.49
COL6A3-209ENST00000472056 CDC14CA4D256 554 aa11.96□□□□□ -0.49
COL6A3-209ENST00000472056 A6NL46 340 aa11.96□□□□□ -0.49
COL6A3-209ENST00000472056 ALOX12BO75342 701 aa11.96□□□□□ -0.49
COL6A3-209ENST00000472056 COX6CP09669 75 aa11.96□□□□□ -0.49
COL6A3-209ENST00000472056 LTC4SQ16873 150 aa11.96□□□□□ -0.49
COL6A3-209ENST00000472056 MYPOPQ86VE0 399 aaPredicted RBP11.96□□□□□ -0.49
COL6A3-209ENST00000472056 MUC20Q8N307 709 aaPredicted RBP11.96□□□□□ -0.49
COL6A3-209ENST00000472056 ZNF740Q8NDX6 193 aa11.96□□□□□ -0.49
COL6A3-209ENST00000472056 ATF1P18846 271 aa11.96□□□□□ -0.5
COL6A3-209ENST00000472056 B2MP61769 119 aa11.96□□□□□ -0.5
COL6A3-209ENST00000472056 GNG3P63215 75 aa11.96□□□□□ -0.5
COL6A3-209ENST00000472056 H1FOOQ8IZA3 346 aaPredicted RBP11.96□□□□□ -0.5
COL6A3-209ENST00000472056 PTP4A1Q93096 173 aa11.96□□□□□ -0.5
COL6A3-209ENST00000472056 OR2A5Q96R48 311 aa11.96□□□□□ -0.5
COL6A3-209ENST00000472056 UQCR10Q9UDW1 63 aa11.96□□□□□ -0.5
COL6A3-209ENST00000472056 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.96□□□□□ -0.5
COL6A3-209ENST00000472056 GAPDHP04406 335 aaKnown RBP11.96□□□□□ -0.5
COL6A3-209ENST00000472056 SEC11BP0C7V7 166 aa11.96□□□□□ -0.5
COL6A3-209ENST00000472056 AWAT1Q58HT5 328 aa11.96□□□□□ -0.5
COL6A3-209ENST00000472056 C6orf201Q7Z4U5 140 aa11.96□□□□□ -0.5
COL6A3-209ENST00000472056 OR8B4Q96RC9 309 aa11.96□□□□□ -0.5
COL6A3-209ENST00000472056 GRAMD2BQ96HH9 432 aa11.95□□□□□ -0.5
COL6A3-209ENST00000472056 FOXN4Q96NZ1 517 aa11.95□□□□□ -0.5
COL6A3-209ENST00000472056 DERL3Q96Q80 235 aa11.95□□□□□ -0.5
COL6A3-209ENST00000472056 ZNF468Q5VIY5 522 aaPredicted RBP11.95□□□□□ -0.5
COL6A3-209ENST00000472056 DHRS13Q6UX07 377 aa11.95□□□□□ -0.5
COL6A3-209ENST00000472056 CHRNA10Q9GZZ6 450 aa11.95□□□□□ -0.5
COL6A3-209ENST00000472056 ALX4Q9H161 411 aaPredicted RBP11.95□□□□□ -0.5
COL6A3-209ENST00000472056 SAP30LQ9HAJ7 183 aa11.95□□□□□ -0.5
COL6A3-209ENST00000472056 TMEM38BQ9NVV0 291 aa11.95□□□□□ -0.5
COL6A3-209ENST00000472056 TECRQ9NZ01 308 aaKnown RBP11.95□□□□□ -0.5
COL6A3-209ENST00000472056 ZNF835Q9Y2P0 537 aa11.95□□□□□ -0.5
COL6A3-209ENST00000472056 AMMECR1Q9Y4X0 333 aaPredicted RBP11.95□□□□□ -0.5
COL6A3-209ENST00000472056 CXorf1O96002 111 aa11.95□□□□□ -0.5
COL6A3-209ENST00000472056 ETV3LQ6ZN32 361 aa11.95□□□□□ -0.5
COL6A3-209ENST00000472056 ZBTB34Q8NCN2 500 aa11.95□□□□□ -0.5
COL6A3-209ENST00000472056 LRFN3Q9BTN0 628 aa11.95□□□□□ -0.5
COL6A3-209ENST00000472056 OR51M1Q9H341 326 aa11.95□□□□□ -0.5
COL6A3-209ENST00000472056 A0A087WUJ7 227 aa11.95□□□□□ -0.5
COL6A3-209ENST00000472056 ANKRD20A5PA0PJZ0 165 aa11.95□□□□□ -0.5
COL6A3-209ENST00000472056 OR5B21A6NL26 309 aa11.95□□□□□ -0.5
COL6A3-209ENST00000472056 LANCL1O43813 399 aa11.95□□□□□ -0.5
COL6A3-209ENST00000472056 TNFRSF1AP19438 455 aa11.95□□□□□ -0.5
COL6A3-209ENST00000472056 RNPS1Q15287 305 aaKnown RBP11.95□□□□□ -0.5
COL6A3-209ENST00000472056 NKAIN4Q8IVV8 208 aa11.95□□□□□ -0.5
COL6A3-209ENST00000472056 SNX22Q96L94 193 aa11.95□□□□□ -0.5
COL6A3-209ENST00000472056 PSMB5P28074 263 aa11.95□□□□□ -0.5
COL6A3-209ENST00000472056 CD226Q15762 336 aa11.95□□□□□ -0.5
COL6A3-209ENST00000472056 PDPNQ86YL7 162 aa11.95□□□□□ -0.5
COL6A3-209ENST00000472056 FAM219AQ8IW50 185 aa11.95□□□□□ -0.5
COL6A3-209ENST00000472056 OR52B4Q8NGK2 314 aa11.95□□□□□ -0.5
COL6A3-209ENST00000472056 MASP2O00187 686 aa11.95□□□□□ -0.5
COL6A3-209ENST00000472056 HRO43593 1189 aa11.95□□□□□ -0.5
COL6A3-209ENST00000472056 IGHA1P01876 353 aa11.95□□□□□ -0.5
COL6A3-209ENST00000472056 IGHA2P01877 340 aa11.95□□□□□ -0.5
COL6A3-209ENST00000472056 VDAC1P21796 283 aa11.95□□□□□ -0.5
COL6A3-209ENST00000472056 NPY1RP25929 384 aa11.95□□□□□ -0.5
COL6A3-209ENST00000472056 EDDM3AQ14507 147 aa11.95□□□□□ -0.5
COL6A3-209ENST00000472056 C9orf62Q8N4C0 152 aa11.95□□□□□ -0.5
COL6A3-209ENST00000472056 PRR14Q9BWN1 585 aa11.95□□□□□ -0.5
COL6A3-209ENST00000472056 RNF167Q9H6Y7 350 aa11.95□□□□□ -0.5
COL6A3-209ENST00000472056 CACNA1EQ15878 2313 aa11.95□□□□□ -0.5
COL6A3-209ENST00000472056 SLC25A42Q86VD7 318 aa11.94□□□□□ -0.5
COL6A3-209ENST00000472056 SLC22A13Q9Y226 551 aa11.94□□□□□ -0.5
COL6A3-209ENST00000472056 MRPS16Q9Y3D3 137 aaKnown RBP11.94□□□□□ -0.5
COL6A3-209ENST00000472056 PLSCR3Q9NRY6 295 aa11.94□□□□□ -0.5
COL6A3-209ENST00000472056 SBF1O95248 1867 aa11.94□□□□□ -0.5
COL6A3-209ENST00000472056 ABLIM3O94929 683 aa11.94□□□□□ -0.5
COL6A3-209ENST00000472056 ZNF25P17030 456 aaPredicted RBP11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms