RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 PVRP15151 417 aa11.92□□□□□ -0.5
USP40-208ENST00000450966 EXOSC7Q15024 291 aaKnown RBP11.92□□□□□ -0.5
USP40-208ENST00000450966 MPV17LQ2QL34 196 aa11.92□□□□□ -0.5
USP40-208ENST00000450966 FCRL6Q6DN72 434 aa11.92□□□□□ -0.5
USP40-208ENST00000450966 MOB3AQ96BX8 217 aa11.92□□□□□ -0.5
USP40-208ENST00000450966 GMPPAQ96IJ6 420 aaPredicted RBP11.92□□□□□ -0.5
USP40-208ENST00000450966 HCSTQ9UBK5 93 aa11.92□□□□□ -0.5
USP40-208ENST00000450966 CCL26Q9Y258 94 aa11.92□□□□□ -0.5
USP40-208ENST00000450966 MTCH2Q9Y6C9 303 aa11.92□□□□□ -0.5
USP40-208ENST00000450966 CST7O76096 145 aa11.91□□□□□ -0.5
USP40-208ENST00000450966 GAPDHP04406 335 aaKnown RBP11.91□□□□□ -0.5
USP40-208ENST00000450966 HIST1H1EP10412 219 aaKnown RBP11.91□□□□□ -0.5
USP40-208ENST00000450966 FOLR2P14207 255 aa11.91□□□□□ -0.5
USP40-208ENST00000450966 NPY1RP25929 384 aa11.91□□□□□ -0.5
USP40-208ENST00000450966 AGFG1P52594 562 aaKnown RBP11.91□□□□□ -0.5
USP40-208ENST00000450966 CDC20BQ86Y33 519 aa11.91□□□□□ -0.5
USP40-208ENST00000450966 OR5C1Q8NGR4 320 aa11.91□□□□□ -0.5
USP40-208ENST00000450966 OR1L3Q8NH93 324 aa11.91□□□□□ -0.5
USP40-208ENST00000450966 ZNF480Q8WV37 535 aa11.91□□□□□ -0.5
USP40-208ENST00000450966 VN1R3Q9BXE9 311 aa11.91□□□□□ -0.5
USP40-208ENST00000450966 ZNF256Q9Y2P7 627 aaPredicted RBP11.91□□□□□ -0.5
USP40-208ENST00000450966 MKRN2OSH3BPM6 223 aa11.91□□□□□ -0.5
USP40-208ENST00000450966 ZNF264O43296 627 aa11.91□□□□□ -0.5
USP40-208ENST00000450966 HPRT1P00492 218 aa11.91□□□□□ -0.5
USP40-208ENST00000450966 BTF3P20290 206 aaKnown RBP11.91□□□□□ -0.5
USP40-208ENST00000450966 OR2A5Q96R48 311 aa11.91□□□□□ -0.5
USP40-208ENST00000450966 CALHM2Q9HA72 323 aa11.91□□□□□ -0.5
USP40-208ENST00000450966 P4HTMQ9NXG6 502 aa11.91□□□□□ -0.5
USP40-208ENST00000450966 SERTM2A0A1B0GWG4 89 aa11.91□□□□□ -0.5
USP40-208ENST00000450966 MEX3AA1L020 520 aaKnown RBP11.91□□□□□ -0.5
USP40-208ENST00000450966 ZC3H12DA2A288 527 aaKnown RBP11.91□□□□□ -0.5
USP40-208ENST00000450966 TUSC2O75896 110 aa11.91□□□□□ -0.5
USP40-208ENST00000450966 MT-ND6P03923 174 aa11.91□□□□□ -0.5
USP40-208ENST00000450966 TCTN3Q6NUS6 607 aa11.91□□□□□ -0.5
USP40-208ENST00000450966 C16orf82Q7Z2V1 217 aa11.91□□□□□ -0.5
USP40-208ENST00000450966 WDR61Q9GZS3 305 aaKnown RBP11.91□□□□□ -0.5
USP40-208ENST00000450966 SLC5A6Q9Y289 635 aa11.91□□□□□ -0.5
USP40-208ENST00000450966 HSPB1P04792 205 aaKnown RBP11.91□□□□□ -0.5
USP40-208ENST00000450966 F13BP05160 661 aa11.91□□□□□ -0.5
USP40-208ENST00000450966 FAM87AP0C7U9 286 aa11.91□□□□□ -0.5
USP40-208ENST00000450966 GPR3P46089 330 aa11.91□□□□□ -0.5
USP40-208ENST00000450966 COL9A2Q14055 689 aaPredicted RBP11.91□□□□□ -0.5
USP40-208ENST00000450966 CPEB3Q8NE35 698 aaKnown RBP11.91□□□□□ -0.5
USP40-208ENST00000450966 PRSS3P2Q8NHM4 247 aa11.91□□□□□ -0.5
USP40-208ENST00000450966 GPX7Q96SL4 187 aaPredicted RBP11.91□□□□□ -0.5
USP40-208ENST00000450966 CNTD2Q9H8S5 307 aa11.91□□□□□ -0.5
USP40-208ENST00000450966 BCORQ6W2J9 1755 aa11.91□□□□□ -0.5
USP40-208ENST00000450966 SLC2A10O95528 541 aa11.9□□□□□ -0.5
USP40-208ENST00000450966 HOXA6P31267 233 aa11.9□□□□□ -0.5
USP40-208ENST00000450966 IL24Q13007 206 aa11.9□□□□□ -0.5
USP40-208ENST00000450966 TMEM255AQ5JRV8 349 aa11.9□□□□□ -0.5
USP40-208ENST00000450966 RBM45Q8IUH3 476 aaKnown RBP11.9□□□□□ -0.5
USP40-208ENST00000450966 MAGT1Q9H0U3 335 aa11.9□□□□□ -0.5
USP40-208ENST00000450966 CACFD1Q9UGQ2 172 aa11.9□□□□□ -0.5
USP40-208ENST00000450966 UPK1AO00322 258 aa11.9□□□□□ -0.5
USP40-208ENST00000450966 HYAL1Q12794 435 aa11.9□□□□□ -0.5
USP40-208ENST00000450966 LAMTOR1Q6IAA8 161 aa11.9□□□□□ -0.5
USP40-208ENST00000450966 SLC25A42Q86VD7 318 aa11.9□□□□□ -0.5
USP40-208ENST00000450966 OR5A2Q8NGI9 324 aa11.9□□□□□ -0.5
USP40-208ENST00000450966 RNF133Q8WVZ7 376 aa11.9□□□□□ -0.5
USP40-208ENST00000450966 RAB40CQ96S21 281 aa11.9□□□□□ -0.5
USP40-208ENST00000450966 MYOZ1Q9NP98 299 aaPredicted RBP11.9□□□□□ -0.5
USP40-208ENST00000450966 LOC107986453A0A1B0GWG9 222 aa11.9□□□□□ -0.5
USP40-208ENST00000450966 A0A1B0GWJ7 208 aa11.9□□□□□ -0.5
USP40-208ENST00000450966 A0A1W2PPC4 97 aa11.9□□□□□ -0.5
USP40-208ENST00000450966 H0YGG7 62 aa11.9□□□□□ -0.5
USP40-208ENST00000450966 DEGS1O15121 323 aa11.9□□□□□ -0.5
USP40-208ENST00000450966 GNG4P50150 75 aa11.9□□□□□ -0.5
USP40-208ENST00000450966 DNLZQ5SXM8 178 aa11.9□□□□□ -0.5
USP40-208ENST00000450966 LDLRAD2Q5SZI1 272 aa11.9□□□□□ -0.5
USP40-208ENST00000450966 OR13H1Q8NG92 308 aa11.9□□□□□ -0.5
USP40-208ENST00000450966 RNF2Q99496 336 aa11.9□□□□□ -0.5
USP40-208ENST00000450966 AKIRIN1Q9H9L7 192 aaPredicted RBP11.9□□□□□ -0.5
USP40-208ENST00000450966 H3BVH4 76 aa11.9□□□□□ -0.5
USP40-208ENST00000450966 CNIH1O95406 144 aa11.9□□□□□ -0.5
USP40-208ENST00000450966 PSMB2P49721 201 aa11.9□□□□□ -0.5
USP40-208ENST00000450966 TNFSF10P50591 281 aa11.9□□□□□ -0.5
USP40-208ENST00000450966 ZFP30Q9Y2G7 519 aa11.9□□□□□ -0.5
USP40-208ENST00000450966 POU3F1Q03052 451 aaPredicted RBP11.9□□□□□ -0.51
USP40-208ENST00000450966 C17orf78Q8N4C9 275 aa11.9□□□□□ -0.51
USP40-208ENST00000450966 WDR13Q9H1Z4 485 aa11.9□□□□□ -0.51
USP40-208ENST00000450966 TAPBPO15533 448 aa11.89□□□□□ -0.51
USP40-208ENST00000450966 CTAG2O75638 210 aa11.89□□□□□ -0.51
USP40-208ENST00000450966 SNCGO76070 127 aa11.89□□□□□ -0.51
USP40-208ENST00000450966 CSN1S1P47710 185 aa11.89□□□□□ -0.51
USP40-208ENST00000450966 ATRAIDQ6UW56 229 aa11.89□□□□□ -0.51
USP40-208ENST00000450966 NUFIP2Q7Z417 695 aaKnown RBP11.89□□□□□ -0.51
USP40-208ENST00000450966 NKAIN4Q8IVV8 208 aa11.89□□□□□ -0.51
USP40-208ENST00000450966 OR13G1Q8NGZ3 307 aa11.89□□□□□ -0.51
USP40-208ENST00000450966 MVB12AQ96EY5 273 aa11.89□□□□□ -0.51
USP40-208ENST00000450966 SIRPB1O00241 398 aa11.89□□□□□ -0.51
USP40-208ENST00000450966 LAIR1Q6GTX8 287 aa11.89□□□□□ -0.51
USP40-208ENST00000450966 FAM71E1Q6IPT2 247 aa11.89□□□□□ -0.51
USP40-208ENST00000450966 H2BFWTQ7Z2G1 175 aa11.89□□□□□ -0.51
USP40-208ENST00000450966 ROBO4Q8WZ75 1007 aa11.89□□□□□ -0.51
USP40-208ENST00000450966 A0A1B0GWA3 101 aa11.89□□□□□ -0.51
USP40-208ENST00000450966 SNURFLB1AK76 121 aa11.89□□□□□ -0.51
USP40-208ENST00000450966 PYCR3Q53H96 274 aa11.89□□□□□ -0.51
USP40-208ENST00000450966 OR10W1Q8NGF6 305 aa11.89□□□□□ -0.51
USP40-208ENST00000450966 OR5D18Q8NGL1 313 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms