RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 FGFBP3Q8TAT2 258 aa18.68■□□□□ 0.58
TRIM54-202ENST00000380075 PPP1R1CQ8WVI7 109 aa18.68■□□□□ 0.58
TRIM54-202ENST00000380075 BCO1Q9HAY6 547 aa18.68■□□□□ 0.58
TRIM54-202ENST00000380075 MED13Q9UHV7 2174 aa18.67■□□□□ 0.58
TRIM54-202ENST00000380075 ZNF816-ZNF321PA0A0X1KG74 233 aa18.67■□□□□ 0.58
TRIM54-202ENST00000380075 ZNF587BE7ETH6 402 aa18.67■□□□□ 0.58
TRIM54-202ENST00000380075 COX5BP10606 129 aa18.67■□□□□ 0.58
TRIM54-202ENST00000380075 MAGEA5P43359 124 aa18.67■□□□□ 0.58
TRIM54-202ENST00000380075 NPY4RP50391 375 aa18.67■□□□□ 0.58
TRIM54-202ENST00000380075 ATP1B3P54709 279 aa18.67■□□□□ 0.58
TRIM54-202ENST00000380075 SOX8P57073 446 aa18.67■□□□□ 0.58
TRIM54-202ENST00000380075 UBA52P62987 128 aaKnown RBP18.67■□□□□ 0.58
TRIM54-202ENST00000380075 PABPC1L2AQ5JQF8 200 aa18.67■□□□□ 0.58
TRIM54-202ENST00000380075 TOR2AQ5JU69 321 aa18.67■□□□□ 0.58
TRIM54-202ENST00000380075 COLCA1Q6ZS62 124 aa18.67■□□□□ 0.58
TRIM54-202ENST00000380075 CCDC28AQ8IWP9 274 aa18.67■□□□□ 0.58
TRIM54-202ENST00000380075 OR13G1Q8NGZ3 307 aa18.67■□□□□ 0.58
TRIM54-202ENST00000380075 POM121Q96HA1 1249 aa18.67■□□□□ 0.58
TRIM54-202ENST00000380075 HES7Q9BYE0 225 aa18.67■□□□□ 0.58
TRIM54-202ENST00000380075 SLC7A10Q9NS82 523 aa18.67■□□□□ 0.58
TRIM54-202ENST00000380075 EHFQ9NZC4 300 aa18.67■□□□□ 0.58
TRIM54-202ENST00000380075 NBEAQ8NFP9 2946 aa18.67■□□□□ 0.58
TRIM54-202ENST00000380075 DOCK10Q96BY6 2186 aa18.66■□□□□ 0.58
TRIM54-202ENST00000380075 FIGNL2A6NMB9 653 aa18.66■□□□□ 0.58
TRIM54-202ENST00000380075 KLRC4-KLRK1H3BQV0 150 aa18.66■□□□□ 0.58
TRIM54-202ENST00000380075 CCSO14618 274 aa18.66■□□□□ 0.58
TRIM54-202ENST00000380075 HTR3BO95264 441 aa18.66■□□□□ 0.58
TRIM54-202ENST00000380075 SP1P08047 785 aa18.66■□□□□ 0.58
TRIM54-202ENST00000380075 CELA3AP09093 270 aa18.66■□□□□ 0.58
TRIM54-202ENST00000380075 SRYQ05066 204 aa18.66■□□□□ 0.58
TRIM54-202ENST00000380075 LINC00696Q6ZRV3 163 aa18.66■□□□□ 0.58
TRIM54-202ENST00000380075 FDCSPQ8NFU4 85 aa18.66■□□□□ 0.58
TRIM54-202ENST00000380075 COQ8AQ8NI60 647 aa18.66■□□□□ 0.58
TRIM54-202ENST00000380075 EMG1Q92979 244 aaKnown RBP18.66■□□□□ 0.58
TRIM54-202ENST00000380075 NMES1Q9C002 83 aa18.66■□□□□ 0.58
TRIM54-202ENST00000380075 FAM166BA8MTA8 275 aa18.66■□□□□ 0.58
TRIM54-202ENST00000380075 NME2P1O60361 137 aa18.66■□□□□ 0.58
TRIM54-202ENST00000380075 NME2P22392 152 aa18.66■□□□□ 0.58
TRIM54-202ENST00000380075 GABRR1P24046 479 aa18.66■□□□□ 0.58
TRIM54-202ENST00000380075 RFC3P40938 356 aa18.66■□□□□ 0.58
TRIM54-202ENST00000380075 ZNF92Q03936 586 aa18.66■□□□□ 0.58
TRIM54-202ENST00000380075 RNPS1Q15287 305 aaKnown RBP18.66■□□□□ 0.58
TRIM54-202ENST00000380075 KCTD9Q7L273 389 aa18.66■□□□□ 0.58
TRIM54-202ENST00000380075 MDS2Q8NDY4 140 aa18.66■□□□□ 0.58
TRIM54-202ENST00000380075 THAP6Q8TBB0 222 aa18.66■□□□□ 0.58
TRIM54-202ENST00000380075 TMEM230Q96A57 120 aa18.66■□□□□ 0.58
TRIM54-202ENST00000380075 SLC6A15Q9H2J7 730 aa18.66■□□□□ 0.58
TRIM54-202ENST00000380075 RAB18Q9NP72 206 aa18.66■□□□□ 0.58
TRIM54-202ENST00000380075 IGKV1-27A0A075B6S5 117 aa18.65■□□□□ 0.58
TRIM54-202ENST00000380075 ACTL6AO96019 429 aa18.65■□□□□ 0.58
TRIM54-202ENST00000380075 DTYMKP23919 212 aa18.65■□□□□ 0.58
TRIM54-202ENST00000380075 ARF1P84077 181 aaKnown RBP18.65■□□□□ 0.58
TRIM54-202ENST00000380075 AADACL3Q5VUY0 350 aa18.65■□□□□ 0.58
TRIM54-202ENST00000380075 ZC3HAV1Q7Z2W4 902 aaKnown RBP18.65■□□□□ 0.58
TRIM54-202ENST00000380075 C6orf201Q7Z4U5 140 aa18.65■□□□□ 0.58
TRIM54-202ENST00000380075 SEC22AQ96IW7 307 aa18.65■□□□□ 0.58
TRIM54-202ENST00000380075 PLA2G3Q9NZ20 509 aa18.65■□□□□ 0.58
TRIM54-202ENST00000380075 KANTRA0A1W2PQU2 76 aa18.64■□□□□ 0.58
TRIM54-202ENST00000380075 SHOXO15266 292 aa18.64■□□□□ 0.58
TRIM54-202ENST00000380075 CEACAM4O75871 244 aa18.64■□□□□ 0.58
TRIM54-202ENST00000380075 PDGFAP04085 211 aa18.64■□□□□ 0.58
TRIM54-202ENST00000380075 ZNF660Q6AZW8 331 aaPredicted RBP18.64■□□□□ 0.58
TRIM54-202ENST00000380075 RPUSD3Q6P087 351 aaKnown RBP18.64■□□□□ 0.58
TRIM54-202ENST00000380075 ACOT7LQ6ZUV0 252 aa18.64■□□□□ 0.58
TRIM54-202ENST00000380075 RTBDNQ9BSG5 229 aaPredicted RBP18.64■□□□□ 0.58
TRIM54-202ENST00000380075 PRRG4Q9BZD6 226 aa18.64■□□□□ 0.58
TRIM54-202ENST00000380075 ZNF552Q9H707 407 aaPredicted RBP18.64■□□□□ 0.58
TRIM54-202ENST00000380075 ZNF701Q9NV72 531 aaPredicted RBP18.64■□□□□ 0.58
TRIM54-202ENST00000380075 FAM25EA8MYX2 175 aa18.64■□□□□ 0.57
TRIM54-202ENST00000380075 NMBP08949 121 aa18.64■□□□□ 0.57
TRIM54-202ENST00000380075 EDN3P14138 238 aa18.64■□□□□ 0.57
TRIM54-202ENST00000380075 MEOX1P50221 254 aa18.64■□□□□ 0.57
TRIM54-202ENST00000380075 AANATQ16613 207 aa18.64■□□□□ 0.57
TRIM54-202ENST00000380075 TUSC5Q8IXB3 177 aa18.64■□□□□ 0.57
TRIM54-202ENST00000380075 ACKR4Q9NPB9 350 aa18.64■□□□□ 0.57
TRIM54-202ENST00000380075 BOD1L1Q8NFC6 3051 aa18.64■□□□□ 0.57
TRIM54-202ENST00000380075 C5orf51A6NDU8 294 aa18.63■□□□□ 0.57
TRIM54-202ENST00000380075 SPRY1O43609 319 aaPredicted RBP18.63■□□□□ 0.57
TRIM54-202ENST00000380075 ANGPTL7O43827 346 aa18.63■□□□□ 0.57
TRIM54-202ENST00000380075 CRHP06850 196 aa18.63■□□□□ 0.57
TRIM54-202ENST00000380075 NKAPLQ5M9Q1 402 aa18.63■□□□□ 0.57
TRIM54-202ENST00000380075 ALKAL2Q6UX46 152 aa18.63■□□□□ 0.57
TRIM54-202ENST00000380075 CLEC18BQ6UXF7 455 aa18.63■□□□□ 0.57
TRIM54-202ENST00000380075 ZSCAN4Q8NAM6 433 aaPredicted RBP18.63■□□□□ 0.57
TRIM54-202ENST00000380075 CPEB3Q8NE35 698 aaKnown RBP18.63■□□□□ 0.57
TRIM54-202ENST00000380075 OR5M9Q8NGP3 310 aa18.63■□□□□ 0.57
TRIM54-202ENST00000380075 APH1AQ96BI3 265 aa18.63■□□□□ 0.57
TRIM54-202ENST00000380075 CALHM2Q9HA72 323 aa18.63■□□□□ 0.57
TRIM54-202ENST00000380075 hCG_1807616A0A1W2PRN6 198 aa18.62■□□□□ 0.57
TRIM54-202ENST00000380075 I3L521 148 aa18.62■□□□□ 0.57
TRIM54-202ENST00000380075 BCL2L11O43521 198 aa18.62■□□□□ 0.57
TRIM54-202ENST00000380075 IGHV3-9P01782 118 aa18.62■□□□□ 0.57
TRIM54-202ENST00000380075 FAM87AP0C7U9 286 aa18.62■□□□□ 0.57
TRIM54-202ENST00000380075 CD46P15529 392 aa18.62■□□□□ 0.57
TRIM54-202ENST00000380075 CHATP28329 748 aa18.62■□□□□ 0.57
TRIM54-202ENST00000380075 SERPINF1P36955 418 aa18.62■□□□□ 0.57
TRIM54-202ENST00000380075 PDZK1IP1Q13113 114 aa18.62■□□□□ 0.57
TRIM54-202ENST00000380075 PLEKHN1Q494U1 663 aaPredicted RBP18.62■□□□□ 0.57
TRIM54-202ENST00000380075 PLCXD3Q63HM9 321 aa18.62■□□□□ 0.57
TRIM54-202ENST00000380075 SIGIRRQ6IA17 410 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms