RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 GALNT14Q96FL9 552 aa18.48■□□□□ 0.55
UPF3A-202ENST00000375299 MESP1Q9BRJ9 268 aa18.48■□□□□ 0.55
UPF3A-202ENST00000375299 CHST5Q9GZS9 411 aa18.48■□□□□ 0.55
UPF3A-202ENST00000375299 KLRF1Q9NZS2 232 aa18.48■□□□□ 0.55
UPF3A-202ENST00000375299 H7C1Q1 480 aa18.47■□□□□ 0.55
UPF3A-202ENST00000375299 OR2C1O95371 312 aa18.47■□□□□ 0.55
UPF3A-202ENST00000375299 PPP1CCP36873 323 aaKnown RBP18.47■□□□□ 0.55
UPF3A-202ENST00000375299 HTR5AP47898 357 aa18.47■□□□□ 0.55
UPF3A-202ENST00000375299 RAB2AP61019 212 aa18.47■□□□□ 0.55
UPF3A-202ENST00000375299 IL13RA2Q14627 380 aa18.47■□□□□ 0.55
UPF3A-202ENST00000375299 HEPN1Q6WQI6 88 aa18.47■□□□□ 0.55
UPF3A-202ENST00000375299 LYZL2Q7Z4W2 148 aa18.47■□□□□ 0.55
UPF3A-202ENST00000375299 DEFB119Q8N690 84 aa18.47■□□□□ 0.55
UPF3A-202ENST00000375299 APCDD1LQ8NCL9 501 aa18.47■□□□□ 0.55
UPF3A-202ENST00000375299 PP6455Q8WZ26 134 aa18.47■□□□□ 0.55
UPF3A-202ENST00000375299 BRWD1Q9NSI6 2320 aa18.47■□□□□ 0.55
UPF3A-202ENST00000375299 MYO7BQ6PIF6 2116 aa18.47■□□□□ 0.55
UPF3A-202ENST00000375299 A0A1W2PNR3 127 aa18.47■□□□□ 0.55
UPF3A-202ENST00000375299 ZNF814B7Z6K7 855 aa18.47■□□□□ 0.55
UPF3A-202ENST00000375299 WRBO00258 174 aa18.47■□□□□ 0.55
UPF3A-202ENST00000375299 YKT6O15498 198 aa18.47■□□□□ 0.55
UPF3A-202ENST00000375299 ZNF728P0DKX0 622 aa18.47■□□□□ 0.55
UPF3A-202ENST00000375299 FOLR1P15328 257 aa18.47■□□□□ 0.55
UPF3A-202ENST00000375299 HIST3H3Q16695 136 aa18.47■□□□□ 0.55
UPF3A-202ENST00000375299 ABCA11PQ4W5N1 156 aa18.47■□□□□ 0.55
UPF3A-202ENST00000375299 LRTM2Q8N967 370 aa18.47■□□□□ 0.55
UPF3A-202ENST00000375299 Q96M66 194 aa18.47■□□□□ 0.55
UPF3A-202ENST00000375299 GGACTQ9BVM4 153 aa18.47■□□□□ 0.55
UPF3A-202ENST00000375299 ZNF160Q9HCG1 818 aa18.47■□□□□ 0.55
UPF3A-202ENST00000375299 NOSIPQ9Y314 301 aaKnown RBP18.47■□□□□ 0.55
UPF3A-202ENST00000375299 K7N7A8 449 aa18.46■□□□□ 0.55
UPF3A-202ENST00000375299 TMEM182Q6ZP80 229 aaPredicted RBP18.46■□□□□ 0.55
UPF3A-202ENST00000375299 RTN4IP1Q8WWV3 396 aaPredicted RBP18.46■□□□□ 0.55
UPF3A-202ENST00000375299 PAPOLGQ9BWT3 736 aaKnown RBP18.46■□□□□ 0.55
UPF3A-202ENST00000375299 SUCNR1Q9BXA5 334 aa18.46■□□□□ 0.55
UPF3A-202ENST00000375299 TOLLIPQ9H0E2 274 aa18.46■□□□□ 0.55
UPF3A-202ENST00000375299 NECAP2Q9NVZ3 263 aa18.46■□□□□ 0.55
UPF3A-202ENST00000375299 DMRT1Q9Y5R6 373 aa18.46■□□□□ 0.55
UPF3A-202ENST00000375299 RALGAPA1Q6GYQ0 2036 aa18.46■□□□□ 0.55
UPF3A-202ENST00000375299 NSG1A0A0A6YYJ2 146 aa18.46■□□□□ 0.55
UPF3A-202ENST00000375299 A0A0U1RQV5 110 aa18.46■□□□□ 0.55
UPF3A-202ENST00000375299 MED19A0JLT2 244 aaPredicted RBP18.46■□□□□ 0.55
UPF3A-202ENST00000375299 OGFOD3Q6PK18 319 aa18.46■□□□□ 0.55
UPF3A-202ENST00000375299 SUMF2Q8NBJ7 301 aa18.46■□□□□ 0.55
UPF3A-202ENST00000375299 FAM213BQ8TBF2 198 aa18.46■□□□□ 0.55
UPF3A-202ENST00000375299 RNF138Q8WVD3 245 aa18.46■□□□□ 0.55
UPF3A-202ENST00000375299 C18orf12Q96KH6 178 aa18.46■□□□□ 0.55
UPF3A-202ENST00000375299 OXGR1Q96P68 337 aa18.46■□□□□ 0.55
UPF3A-202ENST00000375299 TPSD1Q9BZJ3 242 aa18.46■□□□□ 0.55
UPF3A-202ENST00000375299 A0A1B0GV50 99 aa18.45■□□□□ 0.54
UPF3A-202ENST00000375299 ZNF726A6NNF4 738 aa18.45■□□□□ 0.54
UPF3A-202ENST00000375299 DUSP1P28562 367 aa18.45■□□□□ 0.54
UPF3A-202ENST00000375299 NHLH2Q02577 135 aa18.45■□□□□ 0.54
UPF3A-202ENST00000375299 SOHLH1Q5JUK2 328 aa18.45■□□□□ 0.54
UPF3A-202ENST00000375299 FBXW12Q6X9E4 464 aa18.45■□□□□ 0.54
UPF3A-202ENST00000375299 LIAT1Q6ZQX7 453 aa18.45■□□□□ 0.54
UPF3A-202ENST00000375299 DTX1Q86Y01 620 aa18.45■□□□□ 0.54
UPF3A-202ENST00000375299 OR52M1Q8NGK5 317 aa18.45■□□□□ 0.54
UPF3A-202ENST00000375299 AKR7LQ8NHP1 331 aa18.45■□□□□ 0.54
UPF3A-202ENST00000375299 SMDT1Q9H4I9 107 aa18.45■□□□□ 0.54
UPF3A-202ENST00000375299 PIGLQ9Y2B2 252 aa18.45■□□□□ 0.54
UPF3A-202ENST00000375299 PUS1Q9Y606 427 aaKnown RBP eCLIP18.45■□□□□ 0.54
UPF3A-202ENST00000375299 HOXA5P20719 270 aa18.45■□□□□ 0.54
UPF3A-202ENST00000375299 MSX1P28360 303 aa18.45■□□□□ 0.54
UPF3A-202ENST00000375299 KIAA0141Q14154 515 aaPredicted RBP18.45■□□□□ 0.54
UPF3A-202ENST00000375299 C14orf28Q4W4Y0 310 aa18.45■□□□□ 0.54
UPF3A-202ENST00000375299 ZNF600Q6ZNG1 722 aa18.45■□□□□ 0.54
UPF3A-202ENST00000375299 LRRC18Q8N456 261 aa18.45■□□□□ 0.54
UPF3A-202ENST00000375299 D2HGDHQ8N465 521 aa18.45■□□□□ 0.54
UPF3A-202ENST00000375299 PIGQQ9BRB3 760 aa18.45■□□□□ 0.54
UPF3A-202ENST00000375299 RCL1Q9Y2P8 373 aaKnown RBP18.45■□□□□ 0.54
UPF3A-202ENST00000375299 ZNF850A8MQ14 1090 aa18.44■□□□□ 0.54
UPF3A-202ENST00000375299 F5H5K5 113 aa18.44■□□□□ 0.54
UPF3A-202ENST00000375299 ST8SIA3O43173 380 aa18.44■□□□□ 0.54
UPF3A-202ENST00000375299 RAMP1O60894 148 aa18.44■□□□□ 0.54
UPF3A-202ENST00000375299 OR1D5P58170 312 aa18.44■□□□□ 0.54
UPF3A-202ENST00000375299 OR2B11Q5JQS5 317 aa18.44■□□□□ 0.54
UPF3A-202ENST00000375299 SNIP1Q8TAD8 396 aaKnown RBP18.44■□□□□ 0.54
UPF3A-202ENST00000375299 AK3Q9UIJ7 227 aa18.44■□□□□ 0.54
UPF3A-202ENST00000375299 NXT1Q9UKK6 140 aaKnown RBP18.44■□□□□ 0.54
UPF3A-202ENST00000375299 IGHV1OR15-9A0A0B4J2B8 117 aa18.44■□□□□ 0.54
UPF3A-202ENST00000375299 CD38P28907 300 aa18.44■□□□□ 0.54
UPF3A-202ENST00000375299 RRADP55042 308 aa18.44■□□□□ 0.54
UPF3A-202ENST00000375299 TSPO2Q5TGU0 170 aa18.44■□□□□ 0.54
UPF3A-202ENST00000375299 NFAM1Q8NET5 270 aaPredicted RBP18.44■□□□□ 0.54
UPF3A-202ENST00000375299 SLC22A8Q8TCC7 542 aa18.44■□□□□ 0.54
UPF3A-202ENST00000375299 MUCL1Q96DR8 90 aa18.44■□□□□ 0.54
UPF3A-202ENST00000375299 RARRES2Q99969 163 aa18.44■□□□□ 0.54
UPF3A-202ENST00000375299 FAAP24Q9BTP7 215 aa18.44■□□□□ 0.54
UPF3A-202ENST00000375299 NCOA6Q14686 2063 aaPredicted RBP18.43■□□□□ 0.54
UPF3A-202ENST00000375299 A0A1W2PR77 199 aa18.43■□□□□ 0.54
UPF3A-202ENST00000375299 RPS10P46783 165 aaKnown RBP18.43■□□□□ 0.54
UPF3A-202ENST00000375299 LSM6P62312 80 aaKnown RBP18.43■□□□□ 0.54
UPF3A-202ENST00000375299 SYT13Q7L8C5 426 aa18.43■□□□□ 0.54
UPF3A-202ENST00000375299 ZNF729A6NN14 1252 aaPredicted RBP18.42■□□□□ 0.54
UPF3A-202ENST00000375299 YIF1AO95070 293 aa18.42■□□□□ 0.54
UPF3A-202ENST00000375299 DTYMKP23919 212 aa18.42■□□□□ 0.54
UPF3A-202ENST00000375299 OPRM1P35372 400 aa18.42■□□□□ 0.54
UPF3A-202ENST00000375299 FXYD4P59646 89 aa18.42■□□□□ 0.54
UPF3A-202ENST00000375299 Q6ZSR3 168 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms