RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 OR13G1Q8NGZ3 307 aa7.83□□□□□ -1.16
USP4-202ENST00000351842 UBALD1Q8TB05 177 aa7.83□□□□□ -1.16
USP4-202ENST00000351842 GFI1Q99684 422 aa7.83□□□□□ -1.16
USP4-202ENST00000351842 MICU1Q9BPX6 476 aa7.83□□□□□ -1.16
USP4-202ENST00000351842 MRPS28Q9Y2Q9 187 aaKnown RBP7.83□□□□□ -1.16
USP4-202ENST00000351842 SSX4O60224 188 aa7.83□□□□□ -1.16
USP4-202ENST00000351842 ISG15P05161 165 aa7.83□□□□□ -1.16
USP4-202ENST00000351842 ARSBP15848 533 aa7.83□□□□□ -1.16
USP4-202ENST00000351842 APOBEC3AP31941 199 aaPredicted RBP7.83□□□□□ -1.16
USP4-202ENST00000351842 EFNB2P52799 333 aa7.83□□□□□ -1.16
USP4-202ENST00000351842 MAB21L1Q13394 359 aa7.83□□□□□ -1.16
USP4-202ENST00000351842 TAF9Q16594 264 aa7.83□□□□□ -1.16
USP4-202ENST00000351842 ZNF672Q499Z4 452 aaPredicted RBP7.83□□□□□ -1.16
USP4-202ENST00000351842 ATAD3CQ5T2N8 411 aa7.83□□□□□ -1.16
USP4-202ENST00000351842 GLT8D1Q68CQ7 371 aa7.83□□□□□ -1.16
USP4-202ENST00000351842 FDX2Q6P4F2 183 aa7.83□□□□□ -1.16
USP4-202ENST00000351842 CCBE1Q6UXH8 406 aaPredicted RBP7.83□□□□□ -1.16
USP4-202ENST00000351842 PNLDC1Q8NA58 520 aaKnown RBP7.83□□□□□ -1.16
USP4-202ENST00000351842 ATPIF1Q9UII2 106 aa7.83□□□□□ -1.16
USP4-202ENST00000351842 PPP1R3CQ9UQK1 317 aa7.83□□□□□ -1.16
USP4-202ENST00000351842 DYSFO75923 2080 aa7.83□□□□□ -1.16
USP4-202ENST00000351842 HS3ST1O14792 307 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 OR7C1O76099 320 aaPredicted RBP7.82□□□□□ -1.16
USP4-202ENST00000351842 KDM4BO94953 1096 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 SFTPBP07988 381 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 HTR2CP28335 458 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 RORCP51449 518 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 OR8B8Q15620 311 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 PIGYQ3MUY2 71 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 WDR86Q86TI4 376 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 SLC51BQ86UW2 128 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 DYRK2Q92630 601 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 SELENOIQ9C0D9 397 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 CHST6Q9GZX3 395 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 RGCCQ9H4X1 137 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 NXPH2O95156 264 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 IGHV1-46P01743 117 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 CTRB1P17538 263 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 B2MP61769 119 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 IFITM2Q01629 132 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 CNN3Q15417 329 aaKnown RBP7.82□□□□□ -1.16
USP4-202ENST00000351842 RAB11BQ15907 218 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 CTRB2Q6GPI1 263 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 FBXW12Q6X9E4 464 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 GDPD3Q7L5L3 318 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 LILRB2Q8N423 598 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 MAPK1IP1LQ8NDC0 245 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 CSNK2A3Q8NEV1 391 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 FAM222BQ8WU58 562 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 PHF21AQ96BD5 680 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 ATG5Q9H1Y0 275 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 MOV10Q9HCE1 1003 aaKnown RBP7.82□□□□□ -1.16
USP4-202ENST00000351842 V9GYH0 126 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 TRAV39A0A0B4J263 110 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.82□□□□□ -1.16
USP4-202ENST00000351842 IFITM5A6NNB3 132 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 CTAG2O75638 210 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 CYB5AP00167 134 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 TRAPPC2P0DI81 140 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 TRAPPC2BP0DI82 140 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 BCL3P20749 454 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 CD80P33681 288 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 ATP1B3P54709 279 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 TRAM1Q15629 374 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 PAMR1Q6UXH9 720 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 LRRC29Q8WV35 223 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 PP6455Q8WZ26 134 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 RDH5Q92781 318 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 AIFM2Q9BRQ8 373 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 NICN1Q9BSH3 213 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 RTL8AQ9BWD3 113 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 LPAR2Q9HBW0 351 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 SMURF1Q9HCE7 757 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 V9GYS6 101 aa7.82□□□□□ -1.16
USP4-202ENST00000351842 FAM25EA8MYX2 175 aa7.81□□□□□ -1.16
USP4-202ENST00000351842 H3BUI4 141 aa7.81□□□□□ -1.16
USP4-202ENST00000351842 ZNF44P15621 663 aa7.81□□□□□ -1.16
USP4-202ENST00000351842 SPNP16150 400 aa7.81□□□□□ -1.16
USP4-202ENST00000351842 AGAP20933 346 aa7.81□□□□□ -1.16
USP4-202ENST00000351842 VEGFCP49767 419 aa7.81□□□□□ -1.16
USP4-202ENST00000351842 IKZF1Q13422 519 aa7.81□□□□□ -1.16
USP4-202ENST00000351842 CD200R1LQ6Q8B3 271 aa7.81□□□□□ -1.16
USP4-202ENST00000351842 LRRTM1Q86UE6 522 aa7.81□□□□□ -1.16
USP4-202ENST00000351842 BPIFB2Q8N4F0 458 aa7.81□□□□□ -1.16
USP4-202ENST00000351842 TPRX1Q8N7U7 411 aa7.81□□□□□ -1.16
USP4-202ENST00000351842 ASCC1Q8N9N2 400 aaKnown RBP7.81□□□□□ -1.16
USP4-202ENST00000351842 SCCPDHQ8NBX0 429 aa7.81□□□□□ -1.16
USP4-202ENST00000351842 FAM3DQ96BQ1 224 aa7.81□□□□□ -1.16
USP4-202ENST00000351842 DIRAS2Q96HU8 199 aa7.81□□□□□ -1.16
USP4-202ENST00000351842 CCL19Q99731 98 aa7.81□□□□□ -1.16
USP4-202ENST00000351842 DHRS9Q9BPW9 319 aa7.81□□□□□ -1.16
USP4-202ENST00000351842 USB1Q9BQ65 265 aaKnown RBP7.81□□□□□ -1.16
USP4-202ENST00000351842 ELF5Q9UKW6 265 aaPredicted RBP7.81□□□□□ -1.16
USP4-202ENST00000351842 TRBV5-7A0A0A0MS05 114 aa7.81□□□□□ -1.16
USP4-202ENST00000351842 PCP4L1A6NKN8 68 aa7.81□□□□□ -1.16
USP4-202ENST00000351842 SIRPB1O00241 398 aa7.81□□□□□ -1.16
USP4-202ENST00000351842 SC5DO75845 299 aa7.81□□□□□ -1.16
USP4-202ENST00000351842 SELLP14151 372 aa7.81□□□□□ -1.16
USP4-202ENST00000351842 FGF9P31371 208 aaPredicted RBP7.81□□□□□ -1.16
USP4-202ENST00000351842 DDOSTP39656 456 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms