RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 ZNF841Q6ZN19 808 aa15.24■□□□□ 0.03
CLN3-259ENST00000637551 LHFPL2Q6ZUX7 228 aa15.24■□□□□ 0.03
CLN3-259ENST00000637551 AHSA2Q719I0 299 aa15.24■□□□□ 0.03
CLN3-259ENST00000637551 SERPINA12Q8IW75 414 aa15.24■□□□□ 0.03
CLN3-259ENST00000637551 BPIFB6Q8NFQ5 453 aa15.24■□□□□ 0.03
CLN3-259ENST00000637551 OR5D14Q8NGL3 314 aa15.24■□□□□ 0.03
CLN3-259ENST00000637551 OR13C3Q8NGS6 347 aa15.24■□□□□ 0.03
CLN3-259ENST00000637551 RPL3LQ92901 407 aaKnown RBP15.24■□□□□ 0.03
CLN3-259ENST00000637551 BORCS8Q96FH0 119 aa15.24■□□□□ 0.03
CLN3-259ENST00000637551 HES4Q9HCC6 221 aa15.24■□□□□ 0.03
CLN3-259ENST00000637551 BLOC1S6Q9UL45 172 aa15.24■□□□□ 0.03
CLN3-259ENST00000637551 C3orf80F5H4A9 247 aa15.23■□□□□ 0.03
CLN3-259ENST00000637551 XPNPEP2O43895 674 aa15.23■□□□□ 0.03
CLN3-259ENST00000637551 IFNA2P01563 188 aa15.23■□□□□ 0.03
CLN3-259ENST00000637551 CDK1P06493 297 aa15.23■□□□□ 0.03
CLN3-259ENST00000637551 UBE2V2Q15819 145 aa15.23■□□□□ 0.03
CLN3-259ENST00000637551 ODF4Q2M2E3 257 aa15.23■□□□□ 0.03
CLN3-259ENST00000637551 YIF1BQ5BJH7 314 aa15.23■□□□□ 0.03
CLN3-259ENST00000637551 FAM201AQ5SY85 155 aa15.23■□□□□ 0.03
CLN3-259ENST00000637551 DMKNQ6E0U4 476 aaPredicted RBP15.23■□□□□ 0.03
CLN3-259ENST00000637551 HAGHLQ6PII5 290 aaPredicted RBP15.23■□□□□ 0.03
CLN3-259ENST00000637551 BTNL3Q6UXE8 466 aa15.23■□□□□ 0.03
CLN3-259ENST00000637551 ADAT3Q96EY9 351 aaPredicted RBP15.23■□□□□ 0.03
CLN3-259ENST00000637551 MED30Q96HR3 178 aa15.23■□□□□ 0.03
CLN3-259ENST00000637551 NRIP2Q9BQI9 281 aa15.23■□□□□ 0.03
CLN3-259ENST00000637551 MND1Q9BWT6 205 aa15.23■□□□□ 0.03
CLN3-259ENST00000637551 Q9H521 79 aa15.23■□□□□ 0.03
CLN3-259ENST00000637551 DUSP21Q9H596 190 aa15.23■□□□□ 0.03
CLN3-259ENST00000637551 GPR173Q9NS66 373 aa15.23■□□□□ 0.03
CLN3-259ENST00000637551 DNAJB11Q9UBS4 358 aa15.23■□□□□ 0.03
CLN3-259ENST00000637551 ZNF281Q9Y2X9 895 aa15.23■□□□□ 0.03
CLN3-259ENST00000637551 INSIG2Q9Y5U4 225 aa15.23■□□□□ 0.03
CLN3-259ENST00000637551 NKX6-3A6NJ46 265 aa15.22■□□□□ 0.03
CLN3-259ENST00000637551 E9PI62 339 aa15.22■□□□□ 0.03
CLN3-259ENST00000637551 ENSAO43768 121 aaKnown RBP15.22■□□□□ 0.03
CLN3-259ENST00000637551 EGR1P18146 543 aa15.22■□□□□ 0.03
CLN3-259ENST00000637551 SRD5A1P18405 259 aa15.22■□□□□ 0.03
CLN3-259ENST00000637551 ATF1P18846 271 aa15.22■□□□□ 0.03
CLN3-259ENST00000637551 GLRA1P23415 457 aa15.22■□□□□ 0.03
CLN3-259ENST00000637551 ZFP36P26651 326 aaKnown RBP15.22■□□□□ 0.03
CLN3-259ENST00000637551 CD80P33681 288 aa15.22■□□□□ 0.03
CLN3-259ENST00000637551 ATP1B3P54709 279 aa15.22■□□□□ 0.03
CLN3-259ENST00000637551 ERVK11-1P61568 191 aa15.22■□□□□ 0.03
CLN3-259ENST00000637551 OR2G6Q5TZ20 316 aa15.22■□□□□ 0.03
CLN3-259ENST00000637551 ZNF529Q6P280 563 aa15.22■□□□□ 0.03
CLN3-259ENST00000637551 RDH10Q8IZV5 341 aa15.22■□□□□ 0.03
CLN3-259ENST00000637551 NANOGP1Q8N7R0 232 aa15.22■□□□□ 0.03
CLN3-259ENST00000637551 ANGPTL6Q8NI99 470 aa15.22■□□□□ 0.03
CLN3-259ENST00000637551 TMIGD2Q96BF3 282 aa15.22■□□□□ 0.03
CLN3-259ENST00000637551 OPALINQ96PE5 141 aa15.22■□□□□ 0.03
CLN3-259ENST00000637551 ZNF184Q99676 751 aaPredicted RBP15.22■□□□□ 0.03
CLN3-259ENST00000637551 ZCCHC4Q9H5U6 513 aa15.22■□□□□ 0.03
CLN3-259ENST00000637551 NLKQ9UBE8 527 aa15.22■□□□□ 0.03
CLN3-259ENST00000637551 DHDHQ9UQ10 334 aa15.22■□□□□ 0.03
CLN3-259ENST00000637551 RRP15Q9Y3B9 282 aaKnown RBP15.22■□□□□ 0.03
CLN3-259ENST00000637551 IGHV2-70DA0A0C4DH43 119 aa15.21■□□□□ 0.03
CLN3-259ENST00000637551 ADAM20O43506 726 aa15.21■□□□□ 0.03
CLN3-259ENST00000637551 SULT1B1O43704 296 aa15.21■□□□□ 0.03
CLN3-259ENST00000637551 MRPS14O60783 128 aaKnown RBP15.21■□□□□ 0.03
CLN3-259ENST00000637551 CAV3P56539 151 aa15.21■□□□□ 0.03
CLN3-259ENST00000637551 LCN2P80188 198 aa15.21■□□□□ 0.03
CLN3-259ENST00000637551 GPR50Q13585 617 aa15.21■□□□□ 0.03
CLN3-259ENST00000637551 RBM48Q5RL73 367 aaKnown RBP15.21■□□□□ 0.03
CLN3-259ENST00000637551 SFRP4Q6FHJ7 346 aaPredicted RBP15.21■□□□□ 0.03
CLN3-259ENST00000637551 ZNF788Q6ZQV5 615 aa15.21■□□□□ 0.03
CLN3-259ENST00000637551 C1QL2Q7Z5L3 287 aa15.21■□□□□ 0.03
CLN3-259ENST00000637551 MKXQ8IYA7 352 aa15.21■□□□□ 0.03
CLN3-259ENST00000637551 SAXO1Q8IYX7 474 aa15.21■□□□□ 0.03
CLN3-259ENST00000637551 RAB40AQ8WXH6 277 aa15.21■□□□□ 0.03
CLN3-259ENST00000637551 FGGYQ96C11 551 aa15.21■□□□□ 0.03
CLN3-259ENST00000637551 SDSLQ96GA7 329 aa15.21■□□□□ 0.03
CLN3-259ENST00000637551 PDCD1LG2Q9BQ51 273 aa15.21■□□□□ 0.03
CLN3-259ENST00000637551 MRI1Q9BV20 369 aa15.21■□□□□ 0.03
CLN3-259ENST00000637551 TMPRSS13Q9BYE2 586 aa15.21■□□□□ 0.03
CLN3-259ENST00000637551 METTL17Q9H7H0 456 aaPredicted RBP15.21■□□□□ 0.03
CLN3-259ENST00000637551 ANK3Q12955 4377 aaKnown RBP15.21■□□□□ 0.03
CLN3-259ENST00000637551 ARHGAP32A7KAX9 2087 aa15.21■□□□□ 0.03
CLN3-259ENST00000637551 KIR2DS1A0A191URI9 304 aa15.2■□□□□ 0.02
CLN3-259ENST00000637551 OR2AT4A6NND4 320 aa15.2■□□□□ 0.02
CLN3-259ENST00000637551 SIGLEC5O15389 551 aa15.2■□□□□ 0.02
CLN3-259ENST00000637551 TMPRSS2O15393 492 aa15.2■□□□□ 0.02
CLN3-259ENST00000637551 RHBDL1O75783 438 aa15.2■□□□□ 0.02
CLN3-259ENST00000637551 ZNF205O95201 554 aa15.2■□□□□ 0.02
CLN3-259ENST00000637551 CYB5AP00167 134 aa15.2■□□□□ 0.02
CLN3-259ENST00000637551 AZGP1P25311 298 aaKnown RBP15.2■□□□□ 0.02
CLN3-259ENST00000637551 C21orf33P30042 268 aaPredicted RBP15.2■□□□□ 0.02
CLN3-259ENST00000637551 SEC61A1P61619 476 aaKnown RBP15.2■□□□□ 0.02
CLN3-259ENST00000637551 IL13RA1P78552 427 aa15.2■□□□□ 0.02
CLN3-259ENST00000637551 PAX8Q06710 450 aa15.2■□□□□ 0.02
CLN3-259ENST00000637551 LRRC10Q5BKY1 277 aa15.2■□□□□ 0.02
CLN3-259ENST00000637551 ACP7Q6ZNF0 438 aa15.2■□□□□ 0.02
CLN3-259ENST00000637551 PNLDC1Q8NA58 520 aaKnown RBP15.2■□□□□ 0.02
CLN3-259ENST00000637551 ZSCAN4Q8NAM6 433 aaPredicted RBP15.2■□□□□ 0.02
CLN3-259ENST00000637551 DEFB108BQ8NET1 73 aa15.2■□□□□ 0.02
CLN3-259ENST00000637551 OR51A4Q8NGJ6 313 aa15.2■□□□□ 0.02
CLN3-259ENST00000637551 TSEN15Q8WW01 171 aaKnown RBP15.2■□□□□ 0.02
CLN3-259ENST00000637551 LPAR2Q9HBW0 351 aa15.2■□□□□ 0.02
CLN3-259ENST00000637551 CTSZQ9UBR2 303 aa15.2■□□□□ 0.02
CLN3-259ENST00000637551 CLEC2DQ9UHP7 191 aa15.2■□□□□ 0.02
CLN3-259ENST00000637551 ZNF222Q9UK12 451 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms