RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 CNTNAP3Q9BZ76 1288 aa11.13□□□□□ -0.63
LINC00540-203ENST00000631321 GPR173Q9NS66 373 aa11.13□□□□□ -0.63
LINC00540-203ENST00000631321 ANXA10Q9UJ72 324 aa11.13□□□□□ -0.63
LINC00540-203ENST00000631321 SIT1Q9Y3P8 196 aa11.13□□□□□ -0.63
LINC00540-203ENST00000631321 C9J4A7 227 aa11.13□□□□□ -0.63
LINC00540-203ENST00000631321 NTN3O00634 580 aaPredicted RBP11.13□□□□□ -0.63
LINC00540-203ENST00000631321 TERTO14746 1132 aaKnown RBP11.13□□□□□ -0.63
LINC00540-203ENST00000631321 SGCEO43556 437 aa11.13□□□□□ -0.63
LINC00540-203ENST00000631321 KNG1P01042 644 aa11.13□□□□□ -0.63
LINC00540-203ENST00000631321 GABRR1P24046 479 aa11.13□□□□□ -0.63
LINC00540-203ENST00000631321 MTCP1P56278 107 aa11.13□□□□□ -0.63
LINC00540-203ENST00000631321 SRSF3P84103 164 aaKnown RBP11.13□□□□□ -0.63
LINC00540-203ENST00000631321 GUCA2BQ16661 112 aa11.13□□□□□ -0.63
LINC00540-203ENST00000631321 RPS19BP1Q86WX3 136 aaKnown RBP11.13□□□□□ -0.63
LINC00540-203ENST00000631321 MICU1Q9BPX6 476 aa11.13□□□□□ -0.63
LINC00540-203ENST00000631321 HPF1Q9NWY4 346 aa11.13□□□□□ -0.63
LINC00540-203ENST00000631321 OR6C6A6NF89 314 aa11.12□□□□□ -0.63
LINC00540-203ENST00000631321 ZNF705EA8MWA4 302 aaPredicted RBP11.12□□□□□ -0.63
LINC00540-203ENST00000631321 G3V3Y1 287 aa11.12□□□□□ -0.63
LINC00540-203ENST00000631321 TMEM225BP0DP42 221 aa11.12□□□□□ -0.63
LINC00540-203ENST00000631321 S100A10P60903 97 aa11.12□□□□□ -0.63
LINC00540-203ENST00000631321 ZFP36L1Q07352 338 aaKnown RBP11.12□□□□□ -0.63
LINC00540-203ENST00000631321 TMEM42Q69YG0 159 aa11.12□□□□□ -0.63
LINC00540-203ENST00000631321 EIF5AL1Q6IS14 154 aaKnown RBP11.12□□□□□ -0.63
LINC00540-203ENST00000631321 DHRS11Q6UWP2 260 aa11.12□□□□□ -0.63
LINC00540-203ENST00000631321 LDLRAD3Q86YD5 345 aa11.12□□□□□ -0.63
LINC00540-203ENST00000631321 SGPP2Q8IWX5 399 aa11.12□□□□□ -0.63
LINC00540-203ENST00000631321 TMEM156Q8N614 296 aa11.12□□□□□ -0.63
LINC00540-203ENST00000631321 OR1F12Q8NHA8 337 aa11.12□□□□□ -0.63
LINC00540-203ENST00000631321 HLA-CQ95604 372 aa11.12□□□□□ -0.63
LINC00540-203ENST00000631321 REEP6Q96HR9 211 aa11.12□□□□□ -0.63
LINC00540-203ENST00000631321 HDHD3Q9BSH5 251 aaPredicted RBP11.12□□□□□ -0.63
LINC00540-203ENST00000631321 GSKIPQ9P0R6 139 aa11.12□□□□□ -0.63
LINC00540-203ENST00000631321 NDUFA2O43678 99 aa11.11□□□□□ -0.63
LINC00540-203ENST00000631321 GAPDHP04406 335 aaKnown RBP11.11□□□□□ -0.63
LINC00540-203ENST00000631321 ICAM2P13598 275 aa11.11□□□□□ -0.63
LINC00540-203ENST00000631321 IL32P24001 234 aa11.11□□□□□ -0.63
LINC00540-203ENST00000631321 AKR1C2P52895 323 aa11.11□□□□□ -0.63
LINC00540-203ENST00000631321 FLI1Q01543 452 aaPredicted RBP11.11□□□□□ -0.63
LINC00540-203ENST00000631321 HGFACQ04756 655 aa11.11□□□□□ -0.63
LINC00540-203ENST00000631321 AKR1C1Q04828 323 aa11.11□□□□□ -0.63
LINC00540-203ENST00000631321 SPEM2Q0P670 501 aa11.11□□□□□ -0.63
LINC00540-203ENST00000631321 CNN3Q15417 329 aaKnown RBP11.11□□□□□ -0.63
LINC00540-203ENST00000631321 RSPO4Q2I0M5 234 aaPredicted RBP11.11□□□□□ -0.63
LINC00540-203ENST00000631321 IAH1Q2TAA2 248 aaPredicted RBP11.11□□□□□ -0.63
LINC00540-203ENST00000631321 TMEM268Q5VZI3 342 aa11.11□□□□□ -0.63
LINC00540-203ENST00000631321 FNDC9Q8TBE3 224 aa11.11□□□□□ -0.63
LINC00540-203ENST00000631321 CPT1CQ8TCG5 803 aa11.11□□□□□ -0.63
LINC00540-203ENST00000631321 SGCZQ96LD1 299 aa11.11□□□□□ -0.63
LINC00540-203ENST00000631321 JSRP1Q96MG2 331 aaPredicted RBP11.11□□□□□ -0.63
LINC00540-203ENST00000631321 IER2Q9BTL4 223 aa11.11□□□□□ -0.63
LINC00540-203ENST00000631321 SEC11CQ9BY50 192 aa11.11□□□□□ -0.63
LINC00540-203ENST00000631321 TMEM38BQ9NVV0 291 aa11.11□□□□□ -0.63
LINC00540-203ENST00000631321 NDRG3Q9UGV2 375 aa11.11□□□□□ -0.63
LINC00540-203ENST00000631321 IGKV1-27A0A075B6S5 117 aa11.11□□□□□ -0.63
LINC00540-203ENST00000631321 DEDDO75618 318 aa11.11□□□□□ -0.63
LINC00540-203ENST00000631321 SFTPBP07988 381 aa11.11□□□□□ -0.63
LINC00540-203ENST00000631321 OR5H8P0DN80 308 aa11.11□□□□□ -0.63
LINC00540-203ENST00000631321 CHATP28329 748 aa11.11□□□□□ -0.63
LINC00540-203ENST00000631321 SRD5A2P31213 254 aa11.11□□□□□ -0.63
LINC00540-203ENST00000631321 RPL7L1Q6DKI1 246 aaKnown RBP11.11□□□□□ -0.63
LINC00540-203ENST00000631321 DHRS7BQ6IAN0 325 aaPredicted RBP11.11□□□□□ -0.63
LINC00540-203ENST00000631321 LHFPL2Q6ZUX7 228 aa11.11□□□□□ -0.63
LINC00540-203ENST00000631321 ZNF100Q8IYN0 542 aa11.11□□□□□ -0.63
LINC00540-203ENST00000631321 KCNE4Q8WWG9 221 aa11.11□□□□□ -0.63
LINC00540-203ENST00000631321 ACKR4Q9NPB9 350 aa11.11□□□□□ -0.63
LINC00540-203ENST00000631321 UQCC1Q9NVA1 299 aa11.11□□□□□ -0.63
LINC00540-203ENST00000631321 AK3Q9UIJ7 227 aa11.11□□□□□ -0.63
LINC00540-203ENST00000631321 ZNF391Q9UJN7 358 aa11.11□□□□□ -0.63
LINC00540-203ENST00000631321 PADI1Q9ULC6 663 aa11.11□□□□□ -0.63
LINC00540-203ENST00000631321 NSG1A0A0A6YYJ2 146 aa11.1□□□□□ -0.63
LINC00540-203ENST00000631321 F8W036 122 aa11.1□□□□□ -0.63
LINC00540-203ENST00000631321 CST4P01036 141 aa11.1□□□□□ -0.63
LINC00540-203ENST00000631321 CCL4P13236 92 aa11.1□□□□□ -0.63
LINC00540-203ENST00000631321 NTF4P34130 210 aa11.1□□□□□ -0.63
LINC00540-203ENST00000631321 SULT1A2P50226 295 aa11.1□□□□□ -0.63
LINC00540-203ENST00000631321 CAV2P51636 162 aa11.1□□□□□ -0.63
LINC00540-203ENST00000631321 BLOC1S1P78537 153 aa11.1□□□□□ -0.63
LINC00540-203ENST00000631321 RSU1Q15404 277 aa11.1□□□□□ -0.63
LINC00540-203ENST00000631321 ZNF528Q3MIS6 628 aa11.1□□□□□ -0.63
LINC00540-203ENST00000631321 ZNF468Q5VIY5 522 aaPredicted RBP11.1□□□□□ -0.63
LINC00540-203ENST00000631321 ZNF774Q6NX45 483 aa11.1□□□□□ -0.63
LINC00540-203ENST00000631321 TMEM200AQ86VY9 491 aa11.1□□□□□ -0.63
LINC00540-203ENST00000631321 OR2AE1Q8NHA4 323 aa11.1□□□□□ -0.63
LINC00540-203ENST00000631321 FAAP24Q9BTP7 215 aa11.1□□□□□ -0.63
LINC00540-203ENST00000631321 LIME1Q9H400 295 aa11.1□□□□□ -0.63
LINC00540-203ENST00000631321 TAF9BQ9HBM6 251 aa11.1□□□□□ -0.63
LINC00540-203ENST00000631321 OR2S2Q9NQN1 319 aa11.1□□□□□ -0.63
LINC00540-203ENST00000631321 NECAP2Q9NVZ3 263 aa11.1□□□□□ -0.63
LINC00540-203ENST00000631321 IL36GQ9NZH8 169 aa11.1□□□□□ -0.63
LINC00540-203ENST00000631321 CCDC187A0A096LP49 1063 aa11.1□□□□□ -0.63
LINC00540-203ENST00000631321 ZNF716A6NP11 495 aa11.1□□□□□ -0.63
LINC00540-203ENST00000631321 ANGPTL7O43827 346 aa11.1□□□□□ -0.63
LINC00540-203ENST00000631321 LRP3O75074 770 aa11.1□□□□□ -0.63
LINC00540-203ENST00000631321 IFNA21P01568 189 aa11.1□□□□□ -0.63
LINC00540-203ENST00000631321 FCGR3AP08637 254 aa11.1□□□□□ -0.63
LINC00540-203ENST00000631321 RPL12P30050 165 aaKnown RBP11.1□□□□□ -0.63
LINC00540-203ENST00000631321 TAF9Q16594 264 aa11.1□□□□□ -0.63
LINC00540-203ENST00000631321 HFEQ30201 348 aa11.1□□□□□ -0.63
LINC00540-203ENST00000631321 GGNBP1Q5YKI7 109 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms