RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 FSTL3O95633 263 aa15.14■□□□□ 0.01
CLN3-239ENST00000628023 PLATP00750 562 aa15.14■□□□□ 0.01
CLN3-239ENST00000628023 HNF1AP20823 631 aa15.14■□□□□ 0.01
CLN3-239ENST00000628023 MAP2K4P45985 399 aa15.14■□□□□ 0.01
CLN3-239ENST00000628023 RBP2P50120 134 aa15.14■□□□□ 0.01
CLN3-239ENST00000628023 ACSM1Q08AH1 577 aa15.14■□□□□ 0.01
CLN3-239ENST00000628023 LHFPL2Q6ZUX7 228 aa15.14■□□□□ 0.01
CLN3-239ENST00000628023 NLRC3Q7RTR2 1065 aa15.14■□□□□ 0.01
CLN3-239ENST00000628023 PHC2Q8IXK0 858 aa15.14■□□□□ 0.01
CLN3-239ENST00000628023 AQP3Q92482 292 aa15.14■□□□□ 0.01
CLN3-239ENST00000628023 UFD1Q92890 307 aa15.14■□□□□ 0.01
CLN3-239ENST00000628023 TMEM106AQ96A25 262 aa15.14■□□□□ 0.01
CLN3-239ENST00000628023 MSI2Q96DH6 328 aaKnown RBP15.14■□□□□ 0.01
CLN3-239ENST00000628023 PGLYRP3Q96LB9 341 aa15.14■□□□□ 0.01
CLN3-239ENST00000628023 OPALINQ96PE5 141 aa15.14■□□□□ 0.01
CLN3-239ENST00000628023 TMEM246Q9BRR3 403 aa15.14■□□□□ 0.01
CLN3-239ENST00000628023 YTHDF1Q9BYJ9 559 aaKnown RBP15.14■□□□□ 0.01
CLN3-239ENST00000628023 PATZ1Q9HBE1 687 aaKnown RBP15.14■□□□□ 0.01
CLN3-239ENST00000628023 TMEM165Q9HC07 324 aa15.14■□□□□ 0.01
CLN3-239ENST00000628023 LSM2Q9Y333 95 aaKnown RBP15.14■□□□□ 0.01
CLN3-239ENST00000628023 SRRM5B3KS81 715 aa15.13■□□□□ 0.01
CLN3-239ENST00000628023 B4DSR2 109 aa15.13■□□□□ 0.01
CLN3-239ENST00000628023 FAM157AC9JC47 383 aa15.13■□□□□ 0.01
CLN3-239ENST00000628023 TGFAP01135 160 aa15.13■□□□□ 0.01
CLN3-239ENST00000628023 LHBP01229 141 aa15.13■□□□□ 0.01
CLN3-239ENST00000628023 HCKP08631 526 aa15.13■□□□□ 0.01
CLN3-239ENST00000628023 GLRA1P23415 457 aa15.13■□□□□ 0.01
CLN3-239ENST00000628023 CFHR2P36980 270 aa15.13■□□□□ 0.01
CLN3-239ENST00000628023 ATP1B3P54709 279 aa15.13■□□□□ 0.01
CLN3-239ENST00000628023 MTCP1P56278 107 aa15.13■□□□□ 0.01
CLN3-239ENST00000628023 PPP3R1P63098 170 aa15.13■□□□□ 0.01
CLN3-239ENST00000628023 DOC2BQ14184 412 aa15.13■□□□□ 0.01
CLN3-239ENST00000628023 TBCEQ15813 527 aaPredicted RBP15.13■□□□□ 0.01
CLN3-239ENST00000628023 MICBQ29980 383 aa15.13■□□□□ 0.01
CLN3-239ENST00000628023 DCDC5Q6ZRR9 648 aa15.13■□□□□ 0.01
CLN3-239ENST00000628023 ANGPTL5Q86XS5 388 aa15.13■□□□□ 0.01
CLN3-239ENST00000628023 SVOPQ8N4V2 548 aa15.13■□□□□ 0.01
CLN3-239ENST00000628023 PARP16Q8N5Y8 322 aa15.13■□□□□ 0.01
CLN3-239ENST00000628023 DNAAF1Q8NEP3 725 aa15.13■□□□□ 0.01
CLN3-239ENST00000628023 OR51F2Q8NH61 342 aa15.13■□□□□ 0.01
CLN3-239ENST00000628023 TAS2R4Q9NYW5 299 aa15.13■□□□□ 0.01
CLN3-239ENST00000628023 MIOXQ9UGB7 285 aa15.13■□□□□ 0.01
CLN3-239ENST00000628023 IGKV1-9A0A0C4DH69 117 aa15.12■□□□□ 0.01
CLN3-239ENST00000628023 MAGEB3O15480 346 aa15.12■□□□□ 0.01
CLN3-239ENST00000628023 SULT1B1O43704 296 aa15.12■□□□□ 0.01
CLN3-239ENST00000628023 SYNGR1O43759 233 aa15.12■□□□□ 0.01
CLN3-239ENST00000628023 MRPS14O60783 128 aaKnown RBP15.12■□□□□ 0.01
CLN3-239ENST00000628023 CYB5AP00167 134 aa15.12■□□□□ 0.01
CLN3-239ENST00000628023 GYPAP02724 150 aa15.12■□□□□ 0.01
CLN3-239ENST00000628023 MSMBP08118 114 aa15.12■□□□□ 0.01
CLN3-239ENST00000628023 MUC1P15941 1255 aaPredicted RBP15.12■□□□□ 0.01
CLN3-239ENST00000628023 SRD5A1P18405 259 aa15.12■□□□□ 0.01
CLN3-239ENST00000628023 RAB3AP20336 220 aa15.12■□□□□ 0.01
CLN3-239ENST00000628023 POU3F4P49335 361 aa15.12■□□□□ 0.01
CLN3-239ENST00000628023 Q499Y3 187 aa15.12■□□□□ 0.01
CLN3-239ENST00000628023 ESCO2Q56NI9 601 aa15.12■□□□□ 0.01
CLN3-239ENST00000628023 TEX36Q5VZQ5 186 aa15.12■□□□□ 0.01
CLN3-239ENST00000628023 ZNF367Q7RTV3 350 aa15.12■□□□□ 0.01
CLN3-239ENST00000628023 OR8B3Q8NGG8 313 aa15.12■□□□□ 0.01
CLN3-239ENST00000628023 OR8B2Q96RD0 313 aa15.12■□□□□ 0.01
CLN3-239ENST00000628023 TMED9Q9BVK6 235 aa15.12■□□□□ 0.01
CLN3-239ENST00000628023 PKIBQ9C010 78 aa15.12■□□□□ 0.01
CLN3-239ENST00000628023 CKLFQ9UBR5 152 aa15.12■□□□□ 0.01
CLN3-239ENST00000628023 TRBV5-5A0A0J9YX44 114 aa15.11■□□□□ 0.01
CLN3-239ENST00000628023 ADAM20O43506 726 aa15.11■□□□□ 0.01
CLN3-239ENST00000628023 CD1AP06126 327 aa15.11■□□□□ 0.01
CLN3-239ENST00000628023 LIPKQ5VXJ0 399 aa15.11■□□□□ 0.01
CLN3-239ENST00000628023 GLCCI1Q86VQ1 547 aa15.11■□□□□ 0.01
CLN3-239ENST00000628023 FAM90A1Q86YD7 464 aa15.11■□□□□ 0.01
CLN3-239ENST00000628023 CALHM1Q8IU99 346 aa15.11■□□□□ 0.01
CLN3-239ENST00000628023 BATF2Q8N1L9 274 aa15.11■□□□□ 0.01
CLN3-239ENST00000628023 POC1AQ8NBT0 407 aa15.11■□□□□ 0.01
CLN3-239ENST00000628023 THRSPQ92748 146 aa15.11■□□□□ 0.01
CLN3-239ENST00000628023 RFT1Q96AA3 541 aa15.11■□□□□ 0.01
CLN3-239ENST00000628023 TMIGD2Q96BF3 282 aa15.11■□□□□ 0.01
CLN3-239ENST00000628023 NEIL1Q96FI4 390 aaPredicted RBP15.11■□□□□ 0.01
CLN3-239ENST00000628023 CPNE2Q96FN4 548 aaPredicted RBP15.11■□□□□ 0.01
CLN3-239ENST00000628023 SPACA5Q96QH8 159 aa15.11■□□□□ 0.01
CLN3-239ENST00000628023 OR14A2Q96R54 314 aa15.11■□□□□ 0.01
CLN3-239ENST00000628023 WDR13Q9H1Z4 485 aa15.11■□□□□ 0.01
CLN3-239ENST00000628023 SNTG1Q9NSN8 517 aa15.11■□□□□ 0.01
CLN3-239ENST00000628023 MALRD1Q5VYJ5 2156 aa15.1■□□□□ 0.01
CLN3-239ENST00000628023 IGKV1-27A0A075B6S5 117 aa15.1■□□□□ 0.01
CLN3-239ENST00000628023 NKX6-3A6NJ46 265 aa15.1■□□□□ 0.01
CLN3-239ENST00000628023 ZNF879B4DU55 563 aa15.1■□□□□ 0.01
CLN3-239ENST00000628023 F5H0A9 414 aaPredicted RBP15.1■□□□□ 0.01
CLN3-239ENST00000628023 NDUFA2O43678 99 aa15.1■□□□□ 0.01
CLN3-239ENST00000628023 FOXH1O75593 365 aa15.1■□□□□ 0.01
CLN3-239ENST00000628023 INMTO95050 263 aa15.1■□□□□ 0.01
CLN3-239ENST00000628023 NXPH2O95156 264 aa15.1■□□□□ 0.01
CLN3-239ENST00000628023 PGA5P0DJD9 388 aa15.1■□□□□ 0.01
CLN3-239ENST00000628023 MAPK3P27361 379 aaPredicted RBP15.1■□□□□ 0.01
CLN3-239ENST00000628023 PITPNBP48739 271 aa15.1■□□□□ 0.01
CLN3-239ENST00000628023 SEC61A1P61619 476 aaKnown RBP15.1■□□□□ 0.01
CLN3-239ENST00000628023 GNB2P62879 340 aa15.1■□□□□ 0.01
CLN3-239ENST00000628023 LCN2P80188 198 aa15.1■□□□□ 0.01
CLN3-239ENST00000628023 IL24Q13007 206 aa15.1■□□□□ 0.01
CLN3-239ENST00000628023 MLLT11Q13015 90 aaPredicted RBP15.1■□□□□ 0.01
CLN3-239ENST00000628023 SMIM21Q3B7S5 101 aa15.1■□□□□ 0.01
CLN3-239ENST00000628023 SLC25A26Q70HW3 274 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms