RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 OR12D2P58182 307 aa12.47□□□□□ -0.41
TRIM28-205ENST00000595028 ACTA2P62736 377 aa12.47□□□□□ -0.41
TRIM28-205ENST00000595028 ACTG1P63261 375 aa12.47□□□□□ -0.41
TRIM28-205ENST00000595028 ACTG2P63267 376 aa12.47□□□□□ -0.41
TRIM28-205ENST00000595028 DGUOKQ16854 277 aa12.47□□□□□ -0.41
TRIM28-205ENST00000595028 SMIM21Q3B7S5 101 aa12.47□□□□□ -0.41
TRIM28-205ENST00000595028 BRD3OSQ6XYD6 125 aa12.47□□□□□ -0.41
TRIM28-205ENST00000595028 KCTD20Q7Z5Y7 419 aa12.47□□□□□ -0.41
TRIM28-205ENST00000595028 OR2G2Q8NGZ5 317 aa12.47□□□□□ -0.41
TRIM28-205ENST00000595028 MED30Q96HR3 178 aa12.47□□□□□ -0.41
TRIM28-205ENST00000595028 Q96MT0 163 aa12.47□□□□□ -0.41
TRIM28-205ENST00000595028 ADI1Q9BV57 179 aa12.47□□□□□ -0.41
TRIM28-205ENST00000595028 ZMAT3Q9HA38 289 aaKnown RBP12.47□□□□□ -0.41
TRIM28-205ENST00000595028 SLC25A10Q9UBX3 287 aaPredicted RBP12.47□□□□□ -0.41
TRIM28-205ENST00000595028 POLDIP2Q9Y2S7 368 aa12.47□□□□□ -0.41
TRIM28-205ENST00000595028 SOX21Q9Y651 276 aaPredicted RBP12.47□□□□□ -0.41
TRIM28-205ENST00000595028 KPTNQ9Y664 436 aa12.47□□□□□ -0.41
TRIM28-205ENST00000595028 GATBO75879 557 aaKnown RBP12.46□□□□□ -0.41
TRIM28-205ENST00000595028 IGHA1P01876 353 aa12.46□□□□□ -0.41
TRIM28-205ENST00000595028 ACAA1P09110 424 aaPredicted RBP12.46□□□□□ -0.41
TRIM28-205ENST00000595028 PSG2P11465 335 aa12.46□□□□□ -0.41
TRIM28-205ENST00000595028 BPIFB3P59826 476 aa12.46□□□□□ -0.41
TRIM28-205ENST00000595028 NANOS3P60323 173 aaKnown RBP12.46□□□□□ -0.41
TRIM28-205ENST00000595028 ARF6P62330 175 aa12.46□□□□□ -0.41
TRIM28-205ENST00000595028 PDLIM3Q53GG5 364 aaPredicted RBP12.46□□□□□ -0.41
TRIM28-205ENST00000595028 RUSC1-AS1Q66K80 236 aa12.46□□□□□ -0.41
TRIM28-205ENST00000595028 FDX2Q6P4F2 183 aa12.46□□□□□ -0.41
TRIM28-205ENST00000595028 ACP7Q6ZNF0 438 aa12.46□□□□□ -0.41
TRIM28-205ENST00000595028 KIR3DL3Q8N743 410 aa12.46□□□□□ -0.41
TRIM28-205ENST00000595028 LY6G5BQ8NDX9 201 aa12.46□□□□□ -0.41
TRIM28-205ENST00000595028 C8orf46Q8TAG6 207 aa12.46□□□□□ -0.41
TRIM28-205ENST00000595028 APH1BQ8WW43 257 aa12.46□□□□□ -0.41
TRIM28-205ENST00000595028 C10orf35Q96D05 121 aa12.46□□□□□ -0.41
TRIM28-205ENST00000595028 PELI1Q96FA3 418 aa12.46□□□□□ -0.41
TRIM28-205ENST00000595028 C4orf36Q96KX1 117 aa12.46□□□□□ -0.41
TRIM28-205ENST00000595028 DMRTB1Q96MA1 342 aa12.46□□□□□ -0.41
TRIM28-205ENST00000595028 C1orf147Q96MC9 270 aaPredicted RBP12.46□□□□□ -0.41
TRIM28-205ENST00000595028 ZNF488Q96MN9 340 aa12.46□□□□□ -0.41
TRIM28-205ENST00000595028 NRIP2Q9BQI9 281 aa12.46□□□□□ -0.41
TRIM28-205ENST00000595028 DCTN5Q9BTE1 182 aa12.46□□□□□ -0.41
TRIM28-205ENST00000595028 CNTD2Q9H8S5 307 aa12.46□□□□□ -0.41
TRIM28-205ENST00000595028 RASL12Q9NYN1 266 aa12.46□□□□□ -0.41
TRIM28-205ENST00000595028 MDFIC2A0A1B0GVS7 189 aa12.45□□□□□ -0.42
TRIM28-205ENST00000595028 NOS1APO75052 506 aaPredicted RBP12.45□□□□□ -0.42
TRIM28-205ENST00000595028 HTR1AP08908 422 aa12.45□□□□□ -0.42
TRIM28-205ENST00000595028 PRTN3P24158 256 aa12.45□□□□□ -0.42
TRIM28-205ENST00000595028 GABRA2P47869 451 aa12.45□□□□□ -0.42
TRIM28-205ENST00000595028 CAV3P56539 151 aa12.45□□□□□ -0.42
TRIM28-205ENST00000595028 RAB40BQ12829 278 aa12.45□□□□□ -0.42
TRIM28-205ENST00000595028 BAMBIQ13145 260 aa12.45□□□□□ -0.42
TRIM28-205ENST00000595028 PDCD1Q15116 288 aa12.45□□□□□ -0.42
TRIM28-205ENST00000595028 UBE2V2Q15819 145 aa12.45□□□□□ -0.42
TRIM28-205ENST00000595028 TMEM244Q5VVB8 128 aa12.45□□□□□ -0.42
TRIM28-205ENST00000595028 CALHM1Q8IU99 346 aa12.45□□□□□ -0.42
TRIM28-205ENST00000595028 RDH10Q8IZV5 341 aa12.45□□□□□ -0.42
TRIM28-205ENST00000595028 ZNF555Q8NEP9 628 aa12.45□□□□□ -0.42
TRIM28-205ENST00000595028 SGMS2Q8NHU3 365 aa12.45□□□□□ -0.42
TRIM28-205ENST00000595028 TRMT10AQ8TBZ6 339 aaKnown RBP12.45□□□□□ -0.42
TRIM28-205ENST00000595028 NPRL2Q8WTW4 380 aa12.45□□□□□ -0.42
TRIM28-205ENST00000595028 H1FXQ92522 213 aaKnown RBP12.45□□□□□ -0.42
TRIM28-205ENST00000595028 SDSLQ96GA7 329 aa12.45□□□□□ -0.42
TRIM28-205ENST00000595028 MRPL48Q96GC5 212 aaKnown RBP12.45□□□□□ -0.42
TRIM28-205ENST00000595028 MYCBPQ99417 103 aaPredicted RBP12.45□□□□□ -0.42
TRIM28-205ENST00000595028 ALG8Q9BVK2 526 aa12.45□□□□□ -0.42
TRIM28-205ENST00000595028 PKIBQ9C010 78 aa12.45□□□□□ -0.42
TRIM28-205ENST00000595028 AMBNQ9NP70 447 aa12.45□□□□□ -0.42
TRIM28-205ENST00000595028 FRRS1LQ9P0K9 344 aa12.45□□□□□ -0.42
TRIM28-205ENST00000595028 ONECUT1Q9UBC0 465 aa12.45□□□□□ -0.42
TRIM28-205ENST00000595028 SLC7A11Q9UPY5 501 aa12.45□□□□□ -0.42
TRIM28-205ENST00000595028 MYRFQ9Y2G1 1151 aa12.45□□□□□ -0.42
TRIM28-205ENST00000595028 MAB21L2Q9Y586 359 aa12.45□□□□□ -0.42
TRIM28-205ENST00000595028 CENPVL3A0A0U1RRI6 287 aa12.44□□□□□ -0.42
TRIM28-205ENST00000595028 FAM230AA0A1W2PPH8 454 aa12.44□□□□□ -0.42
TRIM28-205ENST00000595028 CLDN34H7C241 214 aa12.44□□□□□ -0.42
TRIM28-205ENST00000595028 FADS2O95864 444 aaKnown RBP12.44□□□□□ -0.42
TRIM28-205ENST00000595028 ISG15P05161 165 aa12.44□□□□□ -0.42
TRIM28-205ENST00000595028 NDUFB7P17568 137 aa12.44□□□□□ -0.42
TRIM28-205ENST00000595028 PEX2P28328 305 aa12.44□□□□□ -0.42
TRIM28-205ENST00000595028 CCR9P51686 369 aa12.44□□□□□ -0.42
TRIM28-205ENST00000595028 GABPB1Q06547 395 aaPredicted RBP12.44□□□□□ -0.42
TRIM28-205ENST00000595028 GALEQ14376 348 aa12.44□□□□□ -0.42
TRIM28-205ENST00000595028 RCN1Q15293 331 aa12.44□□□□□ -0.42
TRIM28-205ENST00000595028 CNN3Q15417 329 aaKnown RBP12.44□□□□□ -0.42
TRIM28-205ENST00000595028 VMO1Q7Z5L0 202 aa12.44□□□□□ -0.42
TRIM28-205ENST00000595028 CMTM4Q8IZR5 234 aa12.44□□□□□ -0.42
TRIM28-205ENST00000595028 SYS1Q8N2H4 156 aa12.44□□□□□ -0.42
TRIM28-205ENST00000595028 TMEM185AQ8NFB2 350 aa12.44□□□□□ -0.42
TRIM28-205ENST00000595028 GATAD2BQ8WXI9 593 aa12.44□□□□□ -0.42
TRIM28-205ENST00000595028 PP6455Q8WZ26 134 aa12.44□□□□□ -0.42
TRIM28-205ENST00000595028 ADAT3Q96EY9 351 aaPredicted RBP12.44□□□□□ -0.42
TRIM28-205ENST00000595028 DUX5Q96PT3 197 aa12.44□□□□□ -0.42
TRIM28-205ENST00000595028 HES4Q9HCC6 221 aa12.44□□□□□ -0.42
TRIM28-205ENST00000595028 C8orf4Q9NR00 106 aa12.44□□□□□ -0.42
TRIM28-205ENST00000595028 INPP5EQ9NRR6 644 aa12.44□□□□□ -0.42
TRIM28-205ENST00000595028 RPL36Q9Y3U8 105 aaKnown RBP12.44□□□□□ -0.42
TRIM28-205ENST00000595028 PRKDCP78527 4128 aaKnown RBP12.44□□□□□ -0.42
TRIM28-205ENST00000595028 IGKV1-27A0A075B6S5 117 aa12.43□□□□□ -0.42
TRIM28-205ENST00000595028 TRBV23-1A0A0A0MS06 115 aa12.43□□□□□ -0.42
TRIM28-205ENST00000595028 IGHV1-69DA0A0B4J2H0 117 aa12.43□□□□□ -0.42
TRIM28-205ENST00000595028 TMEM89A2RUT3 159 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms