RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 TMED9Q9BVK6 235 aa2.06□□□□□ -2.08
SMCHD1-209ENST00000583441 CHID1Q9BWS9 393 aa2.06□□□□□ -2.08
SMCHD1-209ENST00000583441 HAUS4Q9H6D7 363 aa2.06□□□□□ -2.08
SMCHD1-209ENST00000583441 CRCT1Q9UGL9 99 aa2.06□□□□□ -2.08
SMCHD1-209ENST00000583441 RAB22AQ9UL26 194 aa2.06□□□□□ -2.08
SMCHD1-209ENST00000583441 ACOT9Q9Y305 439 aa2.06□□□□□ -2.08
SMCHD1-209ENST00000583441 ORC6Q9Y5N6 252 aa2.06□□□□□ -2.08
SMCHD1-209ENST00000583441 CEACAM18A8MTB9 384 aa2.05□□□□□ -2.08
SMCHD1-209ENST00000583441 C9JQL5 133 aa2.05□□□□□ -2.08
SMCHD1-209ENST00000583441 LGALS9O00182 355 aa2.05□□□□□ -2.08
SMCHD1-209ENST00000583441 NDUFS5O43920 106 aa2.05□□□□□ -2.08
SMCHD1-209ENST00000583441 TPM1P09493 284 aa2.05□□□□□ -2.08
SMCHD1-209ENST00000583441 CELP19835 753 aa2.05□□□□□ -2.08
SMCHD1-209ENST00000583441 PAX6P26367 422 aa2.05□□□□□ -2.08
SMCHD1-209ENST00000583441 GALR1P47211 349 aa2.05□□□□□ -2.08
SMCHD1-209ENST00000583441 DNASE1L1P49184 302 aa2.05□□□□□ -2.08
SMCHD1-209ENST00000583441 SLC18A1P54219 525 aa2.05□□□□□ -2.08
SMCHD1-209ENST00000583441 OR12D2P58182 307 aa2.05□□□□□ -2.08
SMCHD1-209ENST00000583441 DSTNP60981 165 aa2.05□□□□□ -2.08
SMCHD1-209ENST00000583441 IFFO1Q0D2I5 559 aa2.05□□□□□ -2.08
SMCHD1-209ENST00000583441 NDUFAF6Q330K2 333 aa2.05□□□□□ -2.08
SMCHD1-209ENST00000583441 PRR9Q5T870 116 aa2.05□□□□□ -2.08
SMCHD1-209ENST00000583441 FAM104BQ5XKR9 115 aa2.05□□□□□ -2.08
SMCHD1-209ENST00000583441 TRMT10CQ7L0Y3 403 aaKnown RBP2.05□□□□□ -2.08
SMCHD1-209ENST00000583441 SETD3Q86TU7 594 aaPredicted RBP2.05□□□□□ -2.08
SMCHD1-209ENST00000583441 BBS7Q8IWZ6 715 aa2.05□□□□□ -2.08
SMCHD1-209ENST00000583441 PDCL2Q8N4E4 241 aa2.05□□□□□ -2.08
SMCHD1-209ENST00000583441 OR2M7Q8NG81 312 aa2.05□□□□□ -2.08
SMCHD1-209ENST00000583441 NDNFQ8TB73 568 aa2.05□□□□□ -2.08
SMCHD1-209ENST00000583441 WDR34Q96EX3 536 aa2.05□□□□□ -2.08
SMCHD1-209ENST00000583441 RILPQ96NA2 401 aa2.05□□□□□ -2.08
SMCHD1-209ENST00000583441 ZFP3Q96NJ6 502 aa2.05□□□□□ -2.08
SMCHD1-209ENST00000583441 PDCD1LG2Q9BQ51 273 aa2.05□□□□□ -2.08
SMCHD1-209ENST00000583441 RHOXF2Q9BQY4 288 aa2.05□□□□□ -2.08
SMCHD1-209ENST00000583441 ZNF649Q9BS31 505 aa2.05□□□□□ -2.08
SMCHD1-209ENST00000583441 TSGA10Q9BZW7 698 aa2.05□□□□□ -2.08
SMCHD1-209ENST00000583441 PRORYQ9H606 182 aa2.05□□□□□ -2.08
SMCHD1-209ENST00000583441 HMGXB4Q9UGU5 601 aa2.05□□□□□ -2.08
SMCHD1-209ENST00000583441 PRO0628Q9UI54 55 aa2.05□□□□□ -2.08
SMCHD1-209ENST00000583441 YEATS2Q9ULM3 1422 aa2.05□□□□□ -2.08
SMCHD1-209ENST00000583441 CABIN1Q9Y6J0 2220 aa2.05□□□□□ -2.08
SMCHD1-209ENST00000583441 PSMD11O00231 422 aa2.04□□□□□ -2.08
SMCHD1-209ENST00000583441 APOA1P02647 267 aa2.04□□□□□ -2.08
SMCHD1-209ENST00000583441 CD9P21926 228 aa2.04□□□□□ -2.08
SMCHD1-209ENST00000583441 P2RY2P41231 377 aa2.04□□□□□ -2.08
SMCHD1-209ENST00000583441 CMC4P56277 68 aaPredicted RBP2.04□□□□□ -2.08
SMCHD1-209ENST00000583441 RPL10AP62906 217 aaKnown RBP2.04□□□□□ -2.08
SMCHD1-209ENST00000583441 ATP5G2Q06055 141 aa2.04□□□□□ -2.08
SMCHD1-209ENST00000583441 PMVKQ15126 192 aa2.04□□□□□ -2.08
SMCHD1-209ENST00000583441 ATP6AP1LQ52LC2 224 aa2.04□□□□□ -2.08
SMCHD1-209ENST00000583441 C6orf183Q5T699 404 aa2.04□□□□□ -2.08
SMCHD1-209ENST00000583441 AADACL4Q5VUY2 407 aa2.04□□□□□ -2.08
SMCHD1-209ENST00000583441 ZFAND6Q6FIF0 208 aa2.04□□□□□ -2.08
SMCHD1-209ENST00000583441 UGT2A3Q6UWM9 527 aa2.04□□□□□ -2.08
SMCHD1-209ENST00000583441 CLEC19AQ6UXS0 136 aa2.04□□□□□ -2.08
SMCHD1-209ENST00000583441 C16orf47Q6ZP98 133 aaPredicted RBP2.04□□□□□ -2.08
SMCHD1-209ENST00000583441 ZCCHC24Q8N2G6 241 aaKnown RBP2.04□□□□□ -2.08
SMCHD1-209ENST00000583441 OR51Q1Q8NH59 317 aa2.04□□□□□ -2.08
SMCHD1-209ENST00000583441 LRRC20Q8TCA0 184 aa2.04□□□□□ -2.08
SMCHD1-209ENST00000583441 CDKL2Q92772 493 aa2.04□□□□□ -2.08
SMCHD1-209ENST00000583441 HGDQ93099 445 aa2.04□□□□□ -2.08
SMCHD1-209ENST00000583441 CTRCQ99895 268 aa2.04□□□□□ -2.08
SMCHD1-209ENST00000583441 C20orf144Q9BQM9 153 aa2.04□□□□□ -2.08
SMCHD1-209ENST00000583441 SIKE1Q9BRV8 207 aa2.04□□□□□ -2.08
SMCHD1-209ENST00000583441 MRPL20Q9BYC9 149 aaKnown RBP2.04□□□□□ -2.08
SMCHD1-209ENST00000583441 SLC38A1Q9H2H9 487 aa2.04□□□□□ -2.08
SMCHD1-209ENST00000583441 NLE1Q9NVX2 485 aaPredicted RBP2.04□□□□□ -2.08
SMCHD1-209ENST00000583441 SDHAF2Q9NX18 166 aa2.04□□□□□ -2.08
SMCHD1-209ENST00000583441 WIF1Q9Y5W5 379 aa2.04□□□□□ -2.08
SMCHD1-209ENST00000583441 COL1A2P08123 1366 aa2.03□□□□□ -2.08
SMCHD1-209ENST00000583441 LOC102724200A0A096LPH7 203 aaPredicted RBP2.03□□□□□ -2.08
SMCHD1-209ENST00000583441 UPK1AO00322 258 aa2.03□□□□□ -2.08
SMCHD1-209ENST00000583441 UPK2O00526 184 aa2.03□□□□□ -2.08
SMCHD1-209ENST00000583441 MFNGO00587 321 aa2.03□□□□□ -2.08
SMCHD1-209ENST00000583441 RNF113AO15541 343 aaKnown RBP2.03□□□□□ -2.08
SMCHD1-209ENST00000583441 IGHV1-46P01743 117 aa2.03□□□□□ -2.08
SMCHD1-209ENST00000583441 ETV1P50549 477 aa2.03□□□□□ -2.08
SMCHD1-209ENST00000583441 NUDT2P50583 147 aa2.03□□□□□ -2.08
SMCHD1-209ENST00000583441 ELF3P78545 371 aaPredicted RBP2.03□□□□□ -2.08
SMCHD1-209ENST00000583441 FLI1Q01543 452 aaPredicted RBP2.03□□□□□ -2.08
SMCHD1-209ENST00000583441 DYNC1I2Q13409 638 aaKnown RBP2.03□□□□□ -2.08
SMCHD1-209ENST00000583441 MRPL2Q5T653 305 aaKnown RBP2.03□□□□□ -2.08
SMCHD1-209ENST00000583441 EPGNQ6UW88 154 aa2.03□□□□□ -2.08
SMCHD1-209ENST00000583441 FAM231DQ6ZW35 169 aa2.03□□□□□ -2.08
SMCHD1-209ENST00000583441 PDPNQ86YL7 162 aa2.03□□□□□ -2.08
SMCHD1-209ENST00000583441 NELFCDQ8IXH7 590 aa2.03□□□□□ -2.08
SMCHD1-209ENST00000583441 STK40Q8N2I9 435 aa2.03□□□□□ -2.08
SMCHD1-209ENST00000583441 LGALS14Q8TCE9 139 aa2.03□□□□□ -2.08
SMCHD1-209ENST00000583441 YIPF5Q969M3 257 aa2.03□□□□□ -2.08
SMCHD1-209ENST00000583441 YIPF6Q96EC8 236 aa2.03□□□□□ -2.08
SMCHD1-209ENST00000583441 C19orf60Q96EN9 201 aa2.03□□□□□ -2.08
SMCHD1-209ENST00000583441 UTP23Q9BRU9 249 aaKnown RBP2.03□□□□□ -2.08
SMCHD1-209ENST00000583441 KRTAP4-1Q9BYQ7 146 aa2.03□□□□□ -2.08
SMCHD1-209ENST00000583441 SHCBP1LQ9BZQ2 653 aa2.03□□□□□ -2.08
SMCHD1-209ENST00000583441 PORCNQ9H237 461 aa2.03□□□□□ -2.08
SMCHD1-209ENST00000583441 STMN3Q9NZ72 180 aa2.03□□□□□ -2.08
SMCHD1-209ENST00000583441 STX18Q9P2W9 335 aaKnown RBP2.03□□□□□ -2.08
SMCHD1-209ENST00000583441 RWDD2AQ9UIY3 292 aa2.03□□□□□ -2.08
SMCHD1-209ENST00000583441 STK38LQ9Y2H1 464 aa2.03□□□□□ -2.08
SMCHD1-209ENST00000583441 PCM1Q15154 2024 aa2.02□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms