RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 TRAV8-4A0A0B4J246 113 aa2.33□□□□□ -2.04
SS18-214ENST00000580003 HACD1B0YJ81 288 aa2.33□□□□□ -2.04
SS18-214ENST00000580003 C9JQL5 133 aa2.33□□□□□ -2.04
SS18-214ENST00000580003 WRBO00258 174 aa2.33□□□□□ -2.04
SS18-214ENST00000580003 P01737 135 aa2.33□□□□□ -2.04
SS18-214ENST00000580003 IGHV3-53P01767 116 aa2.33□□□□□ -2.04
SS18-214ENST00000580003 SLC6A1P30531 599 aa2.33□□□□□ -2.04
SS18-214ENST00000580003 TAS2R39P59534 338 aa2.33□□□□□ -2.04
SS18-214ENST00000580003 RAB11AP62491 216 aa2.33□□□□□ -2.04
SS18-214ENST00000580003 IL18Q14116 193 aa2.33□□□□□ -2.04
SS18-214ENST00000580003 FBXL19-AS1Q494R0 122 aa2.33□□□□□ -2.04
SS18-214ENST00000580003 FAM122BQ7Z309 247 aa2.33□□□□□ -2.04
SS18-214ENST00000580003 OFCC1Q8IZS5 231 aa2.33□□□□□ -2.04
SS18-214ENST00000580003 ZCCHC24Q8N2G6 241 aaKnown RBP2.33□□□□□ -2.04
SS18-214ENST00000580003 EXO5Q9H790 373 aa2.33□□□□□ -2.04
SS18-214ENST00000580003 PXMP2Q9NR77 195 aa2.33□□□□□ -2.04
SS18-214ENST00000580003 MRPL22Q9NWU5 206 aaKnown RBP2.33□□□□□ -2.04
SS18-214ENST00000580003 VAX2Q9UIW0 290 aa2.33□□□□□ -2.04
SS18-214ENST00000580003 DDX19BQ9UMR2 479 aa2.33□□□□□ -2.04
SS18-214ENST00000580003 C2orf16Q68DN1 1984 aa2.32□□□□□ -2.04
SS18-214ENST00000580003 ZBTB5O15062 677 aa2.32□□□□□ -2.04
SS18-214ENST00000580003 PSCAO43653 123 aa2.32□□□□□ -2.04
SS18-214ENST00000580003 DNAJB6O75190 326 aa2.32□□□□□ -2.04
SS18-214ENST00000580003 CTSGP08311 255 aa2.32□□□□□ -2.04
SS18-214ENST00000580003 SNRPAP09012 282 aaKnown RBP2.32□□□□□ -2.04
SS18-214ENST00000580003 ZNF708P17019 499 aa2.32□□□□□ -2.04
SS18-214ENST00000580003 GNRHRP30968 328 aa2.32□□□□□ -2.04
SS18-214ENST00000580003 CYB561A3Q8NBI2 242 aa2.32□□□□□ -2.04
SS18-214ENST00000580003 PPP1R36Q96LQ0 422 aa2.32□□□□□ -2.04
SS18-214ENST00000580003 ZNF649Q9BS31 505 aa2.32□□□□□ -2.04
SS18-214ENST00000580003 TMEM38BQ9NVV0 291 aa2.32□□□□□ -2.04
SS18-214ENST00000580003 RAB23Q9ULC3 237 aa2.32□□□□□ -2.04
SS18-214ENST00000580003 ICOSQ9Y6W8 199 aa2.32□□□□□ -2.04
SS18-214ENST00000580003 GGTLC3B5MD39 225 aa2.31□□□□□ -2.04
SS18-214ENST00000580003 ZNF73O43830 326 aaPredicted RBP2.31□□□□□ -2.04
SS18-214ENST00000580003 TEAD1P28347 426 aa2.31□□□□□ -2.04
SS18-214ENST00000580003 CLDN18P56856 261 aa2.31□□□□□ -2.04
SS18-214ENST00000580003 C2orf54Q08AI8 447 aa2.31□□□□□ -2.04
SS18-214ENST00000580003 ANGPTL8Q6UXH0 198 aa2.31□□□□□ -2.04
SS18-214ENST00000580003 COMTD1Q86VU5 262 aa2.31□□□□□ -2.04
SS18-214ENST00000580003 OR5H2Q8NGV7 314 aa2.31□□□□□ -2.04
SS18-214ENST00000580003 NAA50Q9GZZ1 169 aaKnown RBP2.31□□□□□ -2.04
SS18-214ENST00000580003 OR51B5Q9H339 312 aa2.31□□□□□ -2.04
SS18-214ENST00000580003 MYBPHLA2RUH7 354 aa2.3□□□□□ -2.04
SS18-214ENST00000580003 H3BN98 237 aa2.3□□□□□ -2.04
SS18-214ENST00000580003 RGS5O15539 181 aa2.3□□□□□ -2.04
SS18-214ENST00000580003 CTAG2O75638 210 aa2.3□□□□□ -2.04
SS18-214ENST00000580003 CDS2O95674 445 aa2.3□□□□□ -2.04
SS18-214ENST00000580003 CD82P27701 267 aa2.3□□□□□ -2.04
SS18-214ENST00000580003 CLDN6P56747 220 aa2.3□□□□□ -2.04
SS18-214ENST00000580003 LAMTOR4Q0VGL1 99 aa2.3□□□□□ -2.04
SS18-214ENST00000580003 ENDOGQ14249 297 aaKnown RBP2.3□□□□□ -2.04
SS18-214ENST00000580003 TTC19Q6DKK2 380 aaPredicted RBP2.3□□□□□ -2.04
SS18-214ENST00000580003 RPRMLQ8N4K4 120 aa2.3□□□□□ -2.04
SS18-214ENST00000580003 OR5P3Q8WZ94 311 aa2.3□□□□□ -2.04
SS18-214ENST00000580003 THTPAQ9BU02 230 aa2.3□□□□□ -2.04
SS18-214ENST00000580003 HIGD2AQ9BW72 106 aa2.3□□□□□ -2.04
SS18-214ENST00000580003 MRPL20Q9BYC9 149 aaKnown RBP2.3□□□□□ -2.04
SS18-214ENST00000580003 VWA8A3KMH1 1905 aa2.29□□□□□ -2.04
SS18-214ENST00000580003 PLEKHG2Q9H7P9 1386 aa2.29□□□□□ -2.04
SS18-214ENST00000580003 GMNCA6NCL1 334 aa2.29□□□□□ -2.04
SS18-214ENST00000580003 OR8G3PP0DMU2 310 aa2.29□□□□□ -2.04
SS18-214ENST00000580003 LGALS7P47929 136 aa2.29□□□□□ -2.04
SS18-214ENST00000580003 ATP6V0D1P61421 351 aa2.29□□□□□ -2.04
SS18-214ENST00000580003 PAFAH1B2P68402 229 aa2.29□□□□□ -2.04
SS18-214ENST00000580003 IRF8Q02556 426 aa2.29□□□□□ -2.04
SS18-214ENST00000580003 TPRG1LQ5T0D9 272 aa2.29□□□□□ -2.04
SS18-214ENST00000580003 FAM231DQ6ZW35 169 aa2.29□□□□□ -2.04
SS18-214ENST00000580003 TRAM1L1Q8N609 369 aa2.29□□□□□ -2.04
SS18-214ENST00000580003 ISOC2Q96AB3 205 aa2.29□□□□□ -2.04
SS18-214ENST00000580003 SLC25A44Q96H78 314 aaPredicted RBP2.29□□□□□ -2.04
SS18-214ENST00000580003 TRAV25A0A0B4J276 109 aa2.28□□□□□ -2.04
SS18-214ENST00000580003 SLC22A20A6NK97 555 aa2.28□□□□□ -2.04
SS18-214ENST00000580003 J3QT63 122 aa2.28□□□□□ -2.04
SS18-214ENST00000580003 OVOL1O14753 267 aa2.28□□□□□ -2.04
SS18-214ENST00000580003 SIVA1O15304 175 aa2.28□□□□□ -2.04
SS18-214ENST00000580003 NDUFS5O43920 106 aa2.28□□□□□ -2.04
SS18-214ENST00000580003 PTTG1O95997 202 aa2.28□□□□□ -2.04
SS18-214ENST00000580003 PTHLHP12272 177 aa2.28□□□□□ -2.04
SS18-214ENST00000580003 CFHR2P36980 270 aa2.28□□□□□ -2.04
SS18-214ENST00000580003 MAGEA1P43355 309 aa2.28□□□□□ -2.04
SS18-214ENST00000580003 RPS5P46782 204 aaKnown RBP2.28□□□□□ -2.04
SS18-214ENST00000580003 ELOCQ15369 112 aa2.28□□□□□ -2.04
SS18-214ENST00000580003 KCTD16Q68DU8 428 aa2.28□□□□□ -2.04
SS18-214ENST00000580003 FXYD5Q96DB9 178 aa2.28□□□□□ -2.04
SS18-214ENST00000580003 GOLGA8TH3BQL2 631 aa2.27□□□□□ -2.05
SS18-214ENST00000580003 CASQ2O14958 399 aaPredicted RBP2.27□□□□□ -2.05
SS18-214ENST00000580003 RPL10AP62906 217 aaKnown RBP2.27□□□□□ -2.05
SS18-214ENST00000580003 Q6ZQT7 251 aa2.27□□□□□ -2.05
SS18-214ENST00000580003 COMMD1Q8N668 190 aa2.27□□□□□ -2.05
SS18-214ENST00000580003 TMEM234Q8WY98 164 aa2.27□□□□□ -2.05
SS18-214ENST00000580003 VPS37BQ9H9H4 285 aa2.27□□□□□ -2.05
SS18-214ENST00000580003 AHSPQ9NZD4 102 aa2.27□□□□□ -2.05
SS18-214ENST00000580003 RABL2BQ9UNT1 228 aa2.27□□□□□ -2.05
SS18-214ENST00000580003 ZNF780BQ9Y6R6 833 aa2.27□□□□□ -2.05
SS18-214ENST00000580003 MUC6Q6W4X9 2439 aa2.27□□□□□ -2.05
SS18-214ENST00000580003 TRDMT1O14717 391 aaKnown RBP2.26□□□□□ -2.05
SS18-214ENST00000580003 SLC31A1O15431 190 aa2.26□□□□□ -2.05
SS18-214ENST00000580003 IFI30P13284 250 aa2.26□□□□□ -2.05
SS18-214ENST00000580003 PMVKQ15126 192 aa2.26□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms