RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 PRB3Q04118 309 aaPredicted RBP5.53□□□□□ -1.52
VPS53-213ENST00000572334 SCN1BQ07699 218 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 PPP1R8Q12972 351 aaKnown RBP5.53□□□□□ -1.52
VPS53-213ENST00000572334 MALLQ13021 153 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 IKZF1Q13422 519 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 CRMP1Q14194 572 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 GK3PQ14409 553 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 TAF9Q16594 264 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 MIDNQ504T8 468 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 TEX30Q5JUR7 227 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 C6orf141Q5SZD1 244 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 ATAD3CQ5T2N8 411 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 MZT2BQ6NZ67 158 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 DRAM2Q6UX65 266 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 CCBE1Q6UXH8 406 aaPredicted RBP5.53□□□□□ -1.52
VPS53-213ENST00000572334 BTN2A1Q7KYR7 527 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 ZDHHC21Q8IVQ6 265 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 LNX2Q8N448 690 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 MFSD4AQ8N468 514 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 Q8N7P7 452 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 BOLLQ8N9W6 283 aaKnown RBP5.53□□□□□ -1.52
VPS53-213ENST00000572334 OR9Q1Q8NGQ5 310 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 OR6F1Q8NGZ6 308 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 OR4F5Q8NH21 305 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 LINC01006Q8NI28 216 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 DYNC2LI1Q8TCX1 351 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 LHX4Q969G2 390 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 SPTSSAQ969W0 71 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 ZDHHC16Q969W1 377 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 SGK3Q96BR1 496 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 SLAMF6Q96DU3 332 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 FAM71F1Q96KD3 344 aaPredicted RBP5.53□□□□□ -1.52
VPS53-213ENST00000572334 HYLS1Q96M11 299 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 NSMCE2Q96MF7 247 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 TECTBQ96PL2 329 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 AMELYQ99218 206 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 KCNJ15Q99712 375 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 SLC29A1Q99808 456 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 TLNRD1Q9H1K6 362 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 BEX1Q9HBH7 125 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 KRCC1Q9NPI7 259 aaPredicted RBP5.53□□□□□ -1.52
VPS53-213ENST00000572334 ACOXLQ9NUZ1 547 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 ERVK-18Q9QC07 812 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 STUB1Q9UNE7 303 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 ING4Q9UNL4 249 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 POMT1Q9Y6A1 747 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 TRAV38-1A0A0B4J264 116 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 hCG_38984A0A1B0GV85 526 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 TCRBV5S2A0A599 114 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 LINC00862A6NCI5 91 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 GGT3PA6NGU5 568 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 ZNF593O00488 134 aaPredicted RBP5.52□□□□□ -1.53
VPS53-213ENST00000572334 NDUFA2O43678 99 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 GPR137BO60478 399 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 TFF1P04155 84 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 FABP3P05413 133 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 RAP2AP10114 183 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 SELLP14151 372 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 ZNF823P16415 610 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 SPI1P17947 270 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 ATF4P18848 351 aaPredicted RBP5.52□□□□□ -1.53
VPS53-213ENST00000572334 ATP6V1B2P21281 511 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 HTR2BP41595 481 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 TGM4P49221 684 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 SLC25A1P53007 311 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 OR8B8Q15620 311 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 CTF1Q16619 201 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 WDR38Q5JTN6 314 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 SYT6Q5T7P8 510 aaPredicted RBP5.52□□□□□ -1.53
VPS53-213ENST00000572334 CD276Q5ZPR3 534 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 WDR82Q6UXN9 313 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 Q6ZSV7 163 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 RASSF6Q6ZTQ3 369 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 SLC16A9Q7RTY1 509 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 PDZD9Q8IXQ8 264 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 FAM216BQ8N7L0 139 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 PNLDC1Q8NA58 520 aaKnown RBP5.52□□□□□ -1.53
VPS53-213ENST00000572334 ZSCAN4Q8NAM6 433 aaPredicted RBP5.52□□□□□ -1.53
VPS53-213ENST00000572334 PROKR2Q8NFJ6 384 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 OR5H6Q8NGV6 325 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 OR2T4Q8NH00 348 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 CANT1Q8WVQ1 401 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 SSMEM1Q8WWF3 244 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 GATAD2BQ8WXI9 593 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 DYRK2Q92630 601 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 TNFRSF14Q92956 283 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 MYDGFQ969H8 173 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 LGALS12Q96DT0 336 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 TMEM80Q96HE8 168 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 AJUBAQ96IF1 538 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 CITED4Q96RK1 184 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 CCL13Q99616 98 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 CCDC90BQ9GZT6 254 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 RANBP3Q9H6Z4 567 aaPredicted RBP5.52□□□□□ -1.53
VPS53-213ENST00000572334 SCPEP1Q9HB40 452 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 ENOPH1Q9UHY7 261 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 RPUSD1Q9UJJ7 312 aaKnown RBP5.52□□□□□ -1.53
VPS53-213ENST00000572334 OAZ3Q9UMX2 235 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 RNF114Q9Y508 228 aa5.52□□□□□ -1.53
VPS53-213ENST00000572334 A0A075B6Q4 140 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms