RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 DEFB113Q30KQ7 82 aa17.41■□□□□ 0.38
CLN3-212ENST00000564574 WDR82Q6UXN9 313 aa17.41■□□□□ 0.38
CLN3-212ENST00000564574 C1orf87Q8N0U7 546 aa17.41■□□□□ 0.38
CLN3-212ENST00000564574 PXT1Q8NFP0 134 aa17.41■□□□□ 0.38
CLN3-212ENST00000564574 OR6M1Q8NGM8 313 aa17.41■□□□□ 0.38
CLN3-212ENST00000564574 TNFAIP8L1Q8WVP5 186 aa17.41■□□□□ 0.38
CLN3-212ENST00000564574 RFT1Q96AA3 541 aa17.41■□□□□ 0.38
CLN3-212ENST00000564574 RNF7Q9UBF6 113 aa17.41■□□□□ 0.38
CLN3-212ENST00000564574 RSL24D1Q9UHA3 163 aaKnown RBP17.41■□□□□ 0.38
CLN3-212ENST00000564574 USF3Q68DE3 2245 aa17.41■□□□□ 0.38
CLN3-212ENST00000564574 hCG_1807616A0A1W2PRN6 198 aa17.4■□□□□ 0.38
CLN3-212ENST00000564574 DPPA5A6NC42 116 aa17.4■□□□□ 0.38
CLN3-212ENST00000564574 NOTOA8MTQ0 251 aa17.4■□□□□ 0.38
CLN3-212ENST00000564574 SLC17A2O00624 439 aa17.4■□□□□ 0.38
CLN3-212ENST00000564574 NDUFS7O75251 213 aa17.4■□□□□ 0.38
CLN3-212ENST00000564574 CFPP27918 469 aa17.4■□□□□ 0.38
CLN3-212ENST00000564574 PMELP40967 661 aa17.4■□□□□ 0.38
CLN3-212ENST00000564574 PTGFRP43088 359 aa17.4■□□□□ 0.38
CLN3-212ENST00000564574 ZNF826PQ6ZT77 177 aa17.4■□□□□ 0.38
CLN3-212ENST00000564574 SLC25A26Q70HW3 274 aa17.4■□□□□ 0.38
CLN3-212ENST00000564574 RNF144BQ7Z419 303 aa17.4■□□□□ 0.38
CLN3-212ENST00000564574 CDH24Q86UP0 819 aa17.4■□□□□ 0.38
CLN3-212ENST00000564574 CROCCP3Q8IVE0 287 aa17.4■□□□□ 0.38
CLN3-212ENST00000564574 S100A13Q99584 98 aa17.4■□□□□ 0.38
CLN3-212ENST00000564574 CNTD2Q9H8S5 307 aa17.4■□□□□ 0.38
CLN3-212ENST00000564574 RHOFQ9HBH0 211 aa17.4■□□□□ 0.38
CLN3-212ENST00000564574 BATF3Q9NR55 127 aa17.4■□□□□ 0.38
CLN3-212ENST00000564574 TMEM106BQ9NUM4 274 aa17.4■□□□□ 0.38
CLN3-212ENST00000564574 CRYBG3Q68DQ2 2970 aa17.4■□□□□ 0.38
CLN3-212ENST00000564574 H3BMQ9 156 aa17.39■□□□□ 0.37
CLN3-212ENST00000564574 SYNGR1O43759 233 aa17.39■□□□□ 0.37
CLN3-212ENST00000564574 CDC14BO60729 498 aa17.39■□□□□ 0.37
CLN3-212ENST00000564574 NOS1APO75052 506 aaPredicted RBP17.39■□□□□ 0.37
CLN3-212ENST00000564574 TMEM127O75204 238 aa17.39■□□□□ 0.37
CLN3-212ENST00000564574 CSF3P09919 207 aa17.39■□□□□ 0.37
CLN3-212ENST00000564574 PGA5P0DJD9 388 aa17.39■□□□□ 0.37
CLN3-212ENST00000564574 TMEM225BP0DP42 221 aa17.39■□□□□ 0.37
CLN3-212ENST00000564574 COL8A2P25067 703 aa17.39■□□□□ 0.37
CLN3-212ENST00000564574 HTR2CP28335 458 aa17.39■□□□□ 0.37
CLN3-212ENST00000564574 OR3A4PP47883 348 aa17.39■□□□□ 0.37
CLN3-212ENST00000564574 MXD1Q05195 221 aa17.39■□□□□ 0.37
CLN3-212ENST00000564574 FAM166AQ6J272 317 aa17.39■□□□□ 0.37
CLN3-212ENST00000564574 ASCL4Q6XD76 172 aa17.39■□□□□ 0.37
CLN3-212ENST00000564574 Q8IYB0 196 aa17.39■□□□□ 0.37
CLN3-212ENST00000564574 POC1AQ8NBT0 407 aa17.39■□□□□ 0.37
CLN3-212ENST00000564574 OR5D18Q8NGL1 313 aa17.39■□□□□ 0.37
CLN3-212ENST00000564574 LRRC29Q8WV35 223 aa17.39■□□□□ 0.37
CLN3-212ENST00000564574 CCL17Q92583 94 aa17.39■□□□□ 0.37
CLN3-212ENST00000564574 YIPF5Q969M3 257 aa17.39■□□□□ 0.37
CLN3-212ENST00000564574 C12orf43Q96C57 262 aaKnown RBP17.39■□□□□ 0.37
CLN3-212ENST00000564574 FAM192AQ9GZU8 254 aa17.39■□□□□ 0.37
CLN3-212ENST00000564574 DCSTAMPQ9H295 470 aa17.39■□□□□ 0.37
CLN3-212ENST00000564574 PLGRKTQ9HBL7 147 aa17.39■□□□□ 0.37
CLN3-212ENST00000564574 GHRLQ9UBU3 117 aa17.39■□□□□ 0.37
CLN3-212ENST00000564574 MRPS28Q9Y2Q9 187 aaKnown RBP17.39■□□□□ 0.37
CLN3-212ENST00000564574 SPG11Q96JI7 2443 aa17.38■□□□□ 0.37
CLN3-212ENST00000564574 A0A0G2JK05 382 aa17.38■□□□□ 0.37
CLN3-212ENST00000564574 IFITM5A6NNB3 132 aa17.38■□□□□ 0.37
CLN3-212ENST00000564574 SRRM5B3KS81 715 aa17.38■□□□□ 0.37
CLN3-212ENST00000564574 SPRY1O43609 319 aaPredicted RBP17.38■□□□□ 0.37
CLN3-212ENST00000564574 RP2O75695 350 aa17.38■□□□□ 0.37
CLN3-212ENST00000564574 RHBDL1O75783 438 aa17.38■□□□□ 0.37
CLN3-212ENST00000564574 KDM4BO94953 1096 aa17.38■□□□□ 0.37
CLN3-212ENST00000564574 PLATP00750 562 aa17.38■□□□□ 0.37
CLN3-212ENST00000564574 CLEC2LP0C7M8 214 aa17.38■□□□□ 0.37
CLN3-212ENST00000564574 UBBP0CG47 229 aa17.38■□□□□ 0.37
CLN3-212ENST00000564574 RPS19P39019 145 aaKnown RBP17.38■□□□□ 0.37
CLN3-212ENST00000564574 CAPZA1P52907 286 aa17.38■□□□□ 0.37
CLN3-212ENST00000564574 OR10A3P58181 314 aa17.38■□□□□ 0.37
CLN3-212ENST00000564574 OR4D6Q8NGJ1 314 aa17.38■□□□□ 0.37
CLN3-212ENST00000564574 OR51F2Q8NH61 342 aa17.38■□□□□ 0.37
CLN3-212ENST00000564574 PERPQ96FX8 193 aa17.38■□□□□ 0.37
CLN3-212ENST00000564574 CEP19Q96LK0 163 aa17.38■□□□□ 0.37
CLN3-212ENST00000564574 METTL9Q9H1A3 318 aa17.38■□□□□ 0.37
CLN3-212ENST00000564574 CHODLQ9H9P2 273 aa17.38■□□□□ 0.37
CLN3-212ENST00000564574 SMURF1Q9HCE7 757 aa17.38■□□□□ 0.37
CLN3-212ENST00000564574 PCDHB16Q9NRJ7 776 aa17.38■□□□□ 0.37
CLN3-212ENST00000564574 IL36GQ9NZH8 169 aa17.38■□□□□ 0.37
CLN3-212ENST00000564574 NPTNQ9Y639 398 aa17.38■□□□□ 0.37
CLN3-212ENST00000564574 CACNG2Q9Y698 323 aa17.38■□□□□ 0.37
CLN3-212ENST00000564574 TRAPPC2LH3BP13 241 aa17.37■□□□□ 0.37
CLN3-212ENST00000564574 TMEM178BH3BS89 294 aa17.37■□□□□ 0.37
CLN3-212ENST00000564574 AIPO00170 330 aa17.37■□□□□ 0.37
CLN3-212ENST00000564574 ZNF780AO75290 641 aaPredicted RBP17.37■□□□□ 0.37
CLN3-212ENST00000564574 LY6HO94772 140 aa17.37■□□□□ 0.37
CLN3-212ENST00000564574 LHBP01229 141 aa17.37■□□□□ 0.37
CLN3-212ENST00000564574 PDLIM4P50479 330 aa17.37■□□□□ 0.37
CLN3-212ENST00000564574 GPR176Q14439 515 aa17.37■□□□□ 0.37
CLN3-212ENST00000564574 RAB11BQ15907 218 aa17.37■□□□□ 0.37
CLN3-212ENST00000564574 AWAT2Q6E213 333 aa17.37■□□□□ 0.37
CLN3-212ENST00000564574 SFXN4Q6P4A7 337 aa17.37■□□□□ 0.37
CLN3-212ENST00000564574 NR2C2APQ86WQ0 139 aa17.37■□□□□ 0.37
CLN3-212ENST00000564574 GCSAMQ8N6F7 178 aa17.37■□□□□ 0.37
CLN3-212ENST00000564574 NDNFQ8TB73 568 aa17.37■□□□□ 0.37
CLN3-212ENST00000564574 TBC1D15Q8TC07 691 aa17.37■□□□□ 0.37
CLN3-212ENST00000564574 SLAMF9Q96A28 289 aa17.37■□□□□ 0.37
CLN3-212ENST00000564574 DGCR14Q96DF8 476 aaKnown RBP17.37■□□□□ 0.37
CLN3-212ENST00000564574 RASL12Q9NYN1 266 aa17.37■□□□□ 0.37
CLN3-212ENST00000564574 TREM2Q9NZC2 230 aa17.37■□□□□ 0.37
CLN3-212ENST00000564574 MTCH1Q9NZJ7 389 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms