RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 CDKL2Q92772 493 aa2.3□□□□□ -2.04
VPS29-205ENST00000548539 CIDECQ96AQ7 238 aaPredicted RBP2.3□□□□□ -2.04
VPS29-205ENST00000548539 GLT1D1Q96MS3 346 aa2.3□□□□□ -2.04
VPS29-205ENST00000548539 IP6K3Q96PC2 410 aa2.3□□□□□ -2.04
VPS29-205ENST00000548539 RHOXF2Q9BQY4 288 aa2.3□□□□□ -2.04
VPS29-205ENST00000548539 TMED9Q9BVK6 235 aa2.3□□□□□ -2.04
VPS29-205ENST00000548539 TBL1XR1Q9BZK7 514 aa2.3□□□□□ -2.04
VPS29-205ENST00000548539 ULBP2Q9BZM5 246 aa2.3□□□□□ -2.04
VPS29-205ENST00000548539 SLC38A1Q9H2H9 487 aa2.3□□□□□ -2.04
VPS29-205ENST00000548539 SDHAF2Q9NX18 166 aa2.3□□□□□ -2.04
VPS29-205ENST00000548539 RAB22AQ9UL26 194 aa2.3□□□□□ -2.04
VPS29-205ENST00000548539 TUBGCP6Q96RT7 1819 aa2.3□□□□□ -2.04
VPS29-205ENST00000548539 NUP214P35658 2090 aaPredicted RBP2.3□□□□□ -2.04
VPS29-205ENST00000548539 CABIN1Q9Y6J0 2220 aa2.3□□□□□ -2.04
VPS29-205ENST00000548539 JCADQ9P266 1359 aa2.29□□□□□ -2.04
VPS29-205ENST00000548539 MGAT4DA6NG13 374 aa2.29□□□□□ -2.04
VPS29-205ENST00000548539 CNMDO75829 334 aa2.29□□□□□ -2.04
VPS29-205ENST00000548539 VAPBO95292 243 aa2.29□□□□□ -2.04
VPS29-205ENST00000548539 MAS1P04201 325 aa2.29□□□□□ -2.04
VPS29-205ENST00000548539 NELFEP18615 380 aaKnown RBP2.29□□□□□ -2.04
VPS29-205ENST00000548539 TNXAQ16473 311 aa2.29□□□□□ -2.04
VPS29-205ENST00000548539 CDNFQ49AH0 187 aa2.29□□□□□ -2.04
VPS29-205ENST00000548539 MED27Q6P2C8 311 aa2.29□□□□□ -2.04
VPS29-205ENST00000548539 PRSS54Q6PEW0 395 aa2.29□□□□□ -2.04
VPS29-205ENST00000548539 IGFL1Q6UW32 110 aa2.29□□□□□ -2.04
VPS29-205ENST00000548539 MIR7-3HGQ8N6C7 128 aa2.29□□□□□ -2.04
VPS29-205ENST00000548539 MRPL48Q96GC5 212 aaKnown RBP2.29□□□□□ -2.04
VPS29-205ENST00000548539 SYT4Q9H2B2 425 aa2.29□□□□□ -2.04
VPS29-205ENST00000548539 DHX35Q9H5Z1 703 aaKnown RBP2.29□□□□□ -2.04
VPS29-205ENST00000548539 LINC00574Q9H8X3 128 aa2.29□□□□□ -2.04
VPS29-205ENST00000548539 SND1-IT1Q9HBX3 110 aa2.29□□□□□ -2.04
VPS29-205ENST00000548539 RWDD2AQ9UIY3 292 aa2.29□□□□□ -2.04
VPS29-205ENST00000548539 DOCK9Q9BZ29 2069 aa2.29□□□□□ -2.04
VPS29-205ENST00000548539 A8MWL6 223 aa2.28□□□□□ -2.04
VPS29-205ENST00000548539 HLA-GP17693 338 aa2.28□□□□□ -2.04
VPS29-205ENST00000548539 BGNP21810 368 aa2.28□□□□□ -2.04
VPS29-205ENST00000548539 P2RY2P41231 377 aa2.28□□□□□ -2.04
VPS29-205ENST00000548539 RANBP1P43487 201 aa2.28□□□□□ -2.04
VPS29-205ENST00000548539 OR12D2P58182 307 aa2.28□□□□□ -2.04
VPS29-205ENST00000548539 RPL10AP62906 217 aaKnown RBP2.28□□□□□ -2.04
VPS29-205ENST00000548539 BTN1A1Q13410 526 aa2.28□□□□□ -2.04
VPS29-205ENST00000548539 MAPRE2Q15555 327 aa2.28□□□□□ -2.04
VPS29-205ENST00000548539 FAHD1Q6P587 224 aa2.28□□□□□ -2.04
VPS29-205ENST00000548539 CLEC19AQ6UXS0 136 aa2.28□□□□□ -2.04
VPS29-205ENST00000548539 PRNTQ86SH4 94 aa2.28□□□□□ -2.04
VPS29-205ENST00000548539 RBM45Q8IUH3 476 aaKnown RBP2.28□□□□□ -2.04
VPS29-205ENST00000548539 ITPRIPQ8IWB1 547 aa2.28□□□□□ -2.04
VPS29-205ENST00000548539 CCNYL1Q8N7R7 359 aa2.28□□□□□ -2.04
VPS29-205ENST00000548539 OR4K2Q8NGD2 314 aa2.28□□□□□ -2.04
VPS29-205ENST00000548539 MSANTD3Q96H12 275 aa2.28□□□□□ -2.04
VPS29-205ENST00000548539 SMIM8Q96KF7 97 aa2.28□□□□□ -2.04
VPS29-205ENST00000548539 METTL26Q96S19 204 aa2.28□□□□□ -2.04
VPS29-205ENST00000548539 COPS4Q9BT78 406 aa2.28□□□□□ -2.04
VPS29-205ENST00000548539 MRPL20Q9BYC9 149 aaKnown RBP2.28□□□□□ -2.04
VPS29-205ENST00000548539 FRMD8P1Q9BZ68 369 aaPredicted RBP2.28□□□□□ -2.04
VPS29-205ENST00000548539 ACOT13Q9NPJ3 140 aa2.28□□□□□ -2.04
VPS29-205ENST00000548539 TFR2Q9UP52 801 aa2.28□□□□□ -2.04
VPS29-205ENST00000548539 SLC7A11Q9UPY5 501 aa2.28□□□□□ -2.04
VPS29-205ENST00000548539 AP3M1Q9Y2T2 418 aa2.28□□□□□ -2.04
VPS29-205ENST00000548539 DOCK8Q8NF50 2099 aa2.28□□□□□ -2.04
VPS29-205ENST00000548539 BRCA1P38398 1863 aaKnown RBP2.28□□□□□ -2.04
VPS29-205ENST00000548539 ELP1O95163 1332 aa2.27□□□□□ -2.05
VPS29-205ENST00000548539 LOC100506127A0A0U1RQW1 187 aa2.27□□□□□ -2.05
VPS29-205ENST00000548539 A0A1B0GW15 77 aa2.27□□□□□ -2.05
VPS29-205ENST00000548539 SLC5A10A0PJK1 596 aa2.27□□□□□ -2.05
VPS29-205ENST00000548539 TMEM72A0PK05 275 aa2.27□□□□□ -2.05
VPS29-205ENST00000548539 ZNF98A6NK75 572 aa2.27□□□□□ -2.05
VPS29-205ENST00000548539 E7EWF7 191 aa2.27□□□□□ -2.05
VPS29-205ENST00000548539 PRAMEF26H0Y7S4 382 aa2.27□□□□□ -2.05
VPS29-205ENST00000548539 GATCO43716 136 aaKnown RBP2.27□□□□□ -2.05
VPS29-205ENST00000548539 OR7C2O60412 319 aa2.27□□□□□ -2.05
VPS29-205ENST00000548539 LHBP01229 141 aa2.27□□□□□ -2.05
VPS29-205ENST00000548539 IVLP07476 585 aa2.27□□□□□ -2.05
VPS29-205ENST00000548539 SEC11BP0C7V7 166 aa2.27□□□□□ -2.05
VPS29-205ENST00000548539 LCN1P31025 176 aa2.27□□□□□ -2.05
VPS29-205ENST00000548539 GPR4P46093 362 aa2.27□□□□□ -2.05
VPS29-205ENST00000548539 GDI2P50395 445 aaKnown RBP2.27□□□□□ -2.05
VPS29-205ENST00000548539 RBX1P62877 108 aa2.27□□□□□ -2.05
VPS29-205ENST00000548539 C2orf80Q0P641 193 aa2.27□□□□□ -2.05
VPS29-205ENST00000548539 STX4Q12846 297 aa2.27□□□□□ -2.05
VPS29-205ENST00000548539 SP6Q3SY56 376 aa2.27□□□□□ -2.05
VPS29-205ENST00000548539 Q3ZCU0 254 aa2.27□□□□□ -2.05
VPS29-205ENST00000548539 KRTAP13-2Q52LG2 175 aa2.27□□□□□ -2.05
VPS29-205ENST00000548539 FBXO48Q5FWF7 155 aa2.27□□□□□ -2.05
VPS29-205ENST00000548539 SYT6Q5T7P8 510 aaPredicted RBP2.27□□□□□ -2.05
VPS29-205ENST00000548539 NELFCDQ8IXH7 590 aa2.27□□□□□ -2.05
VPS29-205ENST00000548539 OR6K2Q8NGY2 324 aa2.27□□□□□ -2.05
VPS29-205ENST00000548539 LGALS14Q8TCE9 139 aa2.27□□□□□ -2.05
VPS29-205ENST00000548539 C22orf15Q8WYQ4 148 aa2.27□□□□□ -2.05
VPS29-205ENST00000548539 YIPF6Q96EC8 236 aa2.27□□□□□ -2.05
VPS29-205ENST00000548539 DERL3Q96Q80 235 aa2.27□□□□□ -2.05
VPS29-205ENST00000548539 PDCD1LG2Q9BQ51 273 aa2.27□□□□□ -2.05
VPS29-205ENST00000548539 MS4A8Q9BY19 250 aa2.27□□□□□ -2.05
VPS29-205ENST00000548539 RAB1BQ9H0U4 201 aa2.27□□□□□ -2.05
VPS29-205ENST00000548539 ZNF302Q9NR11 478 aa2.27□□□□□ -2.05
VPS29-205ENST00000548539 VAPAQ9P0L0 249 aa2.27□□□□□ -2.05
VPS29-205ENST00000548539 MARCOQ9UEW3 520 aaPredicted RBP2.27□□□□□ -2.05
VPS29-205ENST00000548539 CLEC2DQ9UHP7 191 aa2.27□□□□□ -2.05
VPS29-205ENST00000548539 PRO0628Q9UI54 55 aa2.27□□□□□ -2.05
VPS29-205ENST00000548539 ANXA10Q9UJ72 324 aa2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms