RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 AMY2BP19961 511 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 DLSTP36957 453 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 LHX2P50458 406 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 SOX8P57073 446 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 OC90Q02509 493 aaPredicted RBP8.6□□□□□ -1.03
SS18-205ENST00000542420 PPP1R1AQ13522 171 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 ARFRP1Q13795 201 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 RNPS1Q15287 305 aaKnown RBP8.6□□□□□ -1.03
SS18-205ENST00000542420 CD163Q86VB7 1156 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 SAXO1Q8IYX7 474 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 EIF4E3Q8N5X7 224 aaKnown RBP8.6□□□□□ -1.03
SS18-205ENST00000542420 GVQW1Q8N7I0 195 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 Q8NFD4 153 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 OR5AP2Q8NGF4 316 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 COQ8AQ8NI60 647 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 NKX3-1Q99801 234 aaPredicted RBP8.6□□□□□ -1.03
SS18-205ENST00000542420 REPIN1Q9BWE0 567 aaKnown RBP8.6□□□□□ -1.03
SS18-205ENST00000542420 WNT5BQ9H1J7 359 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 SLC25A32Q9H2D1 315 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 MYEF2Q9P2K5 600 aaKnown RBP8.6□□□□□ -1.03
SS18-205ENST00000542420 FXYD6-FXYD2A0A087WZ82 144 aa8.59□□□□□ -1.03
SS18-205ENST00000542420 TRAV20A0A0B4J274 112 aa8.59□□□□□ -1.03
SS18-205ENST00000542420 TRAPPC6AO75865 159 aa8.59□□□□□ -1.03
SS18-205ENST00000542420 LYL1P12980 280 aa8.59□□□□□ -1.03
SS18-205ENST00000542420 BLVRBP30043 206 aaPredicted RBP8.59□□□□□ -1.03
SS18-205ENST00000542420 HTR5AP47898 357 aa8.59□□□□□ -1.03
SS18-205ENST00000542420 RBP2P50120 134 aa8.59□□□□□ -1.03
SS18-205ENST00000542420 ATP1B3P54709 279 aa8.59□□□□□ -1.03
SS18-205ENST00000542420 CLDN15P56746 228 aa8.59□□□□□ -1.03
SS18-205ENST00000542420 PSG4Q00888 419 aa8.59□□□□□ -1.03
SS18-205ENST00000542420 SRSF7Q16629 238 aaKnown RBP eCLIP8.59□□□□□ -1.03
SS18-205ENST00000542420 CEACAM16Q2WEN9 425 aa8.59□□□□□ -1.03
SS18-205ENST00000542420 SNAI3Q3KNW1 292 aa8.59□□□□□ -1.03
SS18-205ENST00000542420 SLC22A6Q4U2R8 563 aa8.59□□□□□ -1.03
SS18-205ENST00000542420 PABPC1L2AQ5JQF8 200 aa8.59□□□□□ -1.03
SS18-205ENST00000542420 DCAF10Q5QP82 559 aa8.59□□□□□ -1.03
SS18-205ENST00000542420 C17orf107Q6ZR85 190 aa8.59□□□□□ -1.03
SS18-205ENST00000542420 ACOT7LQ6ZUV0 252 aa8.59□□□□□ -1.03
SS18-205ENST00000542420 GALNTL5Q7Z4T8 443 aa8.59□□□□□ -1.03
SS18-205ENST00000542420 ARL6Q9H0F7 186 aa8.59□□□□□ -1.03
SS18-205ENST00000542420 FXYD6Q9H0Q3 95 aa8.59□□□□□ -1.03
SS18-205ENST00000542420 ACKR4Q9NPB9 350 aa8.59□□□□□ -1.03
SS18-205ENST00000542420 MCTS1Q9ULC4 181 aaKnown RBP8.59□□□□□ -1.03
SS18-205ENST00000542420 SLC7A11Q9UPY5 501 aa8.59□□□□□ -1.03
SS18-205ENST00000542420 MYO7BQ6PIF6 2116 aa8.59□□□□□ -1.03
SS18-205ENST00000542420 ZNF816-ZNF321PA0A0X1KG74 233 aa8.59□□□□□ -1.03
SS18-205ENST00000542420 CDX4O14627 284 aaPredicted RBP8.59□□□□□ -1.03
SS18-205ENST00000542420 MRPL33O75394 65 aaKnown RBP8.59□□□□□ -1.03
SS18-205ENST00000542420 SERPINA5P05154 406 aa8.59□□□□□ -1.03
SS18-205ENST00000542420 FGF2P09038 288 aa8.59□□□□□ -1.03
SS18-205ENST00000542420 OR3A2P47893 321 aa8.59□□□□□ -1.03
SS18-205ENST00000542420 CLDN18P56856 261 aa8.59□□□□□ -1.03
SS18-205ENST00000542420 SORDQ00796 357 aa8.59□□□□□ -1.03
SS18-205ENST00000542420 NKPD1Q17RQ9 610 aa8.59□□□□□ -1.03
SS18-205ENST00000542420 OR52W1Q6IF63 320 aa8.59□□□□□ -1.03
SS18-205ENST00000542420 ZNF774Q6NX45 483 aa8.59□□□□□ -1.03
SS18-205ENST00000542420 ZNF546Q86UE3 836 aa8.59□□□□□ -1.03
SS18-205ENST00000542420 BORCS8Q96FH0 119 aa8.59□□□□□ -1.03
SS18-205ENST00000542420 CXorf58Q96LI9 332 aa8.59□□□□□ -1.03
SS18-205ENST00000542420 DNTTIP1Q9H147 329 aa8.59□□□□□ -1.03
SS18-205ENST00000542420 BANF2Q9H503 90 aa8.59□□□□□ -1.03
SS18-205ENST00000542420 ARHGAP21Q5T5U3 1957 aa8.59□□□□□ -1.04
SS18-205ENST00000542420 DNAH14Q0VDD8 3507 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 PINLYPA6NC86 204 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 FAM74A7A6NL05 159 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 J3QW42 95 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 BCL2L11O43521 198 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 NME2P1O60361 137 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 RAD51DO75771 328 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 SIX6O95475 246 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 PMP2P02689 132 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 LCATP04180 440 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 GLAP06280 429 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 NME2P22392 152 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 MTCP1P56278 107 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 FAM74A3Q4VXF1 159 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 TCEAL6Q6IPX3 200 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 OR5M9Q8NGP3 310 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 THAP6Q8TBB0 222 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 ROBO4Q8WZ75 1007 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 TCEAL3Q969E4 200 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 VRK1Q99986 396 aaPredicted RBP8.58□□□□□ -1.04
SS18-205ENST00000542420 PDCD10Q9BUL8 212 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 FOXJ2Q9P0K8 574 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 SESN1Q9Y6P5 492 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 KANTRA0A1W2PQU2 76 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 RNF222A6NCQ9 220 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 POM121CA8CG34 1229 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 MPTX1A8MV57 137 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 KLRC4-KLRK1H3BQV0 150 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 LGALS8O00214 317 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 NRASP01111 189 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 CSTBP04080 98 aaKnown RBP8.58□□□□□ -1.04
SS18-205ENST00000542420 NMBP08949 121 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 DBHP09172 617 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 SELLP14151 372 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 SDHBP21912 280 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 ANOS1P23352 680 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 ARR3P36575 388 aa8.58□□□□□ -1.04
SS18-205ENST00000542420 AKR1D1P51857 326 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms