RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 IGKV1-27A0A075B6S5 117 aa11.71□□□□□ -0.53
USP28-209ENST00000540925 TRAV40A0A0B4J280 105 aa11.71□□□□□ -0.53
USP28-209ENST00000540925 ANKRD61A6NGH8 418 aa11.71□□□□□ -0.53
USP28-209ENST00000540925 GLRA1P23415 457 aa11.71□□□□□ -0.53
USP28-209ENST00000540925 HAAOP46952 286 aa11.71□□□□□ -0.53
USP28-209ENST00000540925 CAV3P56539 151 aa11.71□□□□□ -0.53
USP28-209ENST00000540925 BPIFB3P59826 476 aa11.71□□□□□ -0.53
USP28-209ENST00000540925 GMFBP60983 142 aa11.71□□□□□ -0.53
USP28-209ENST00000540925 IL13RA1P78552 427 aa11.71□□□□□ -0.53
USP28-209ENST00000540925 RAB40BQ12829 278 aa11.71□□□□□ -0.53
USP28-209ENST00000540925 GALEQ14376 348 aa11.71□□□□□ -0.53
USP28-209ENST00000540925 LPCAT4Q643R3 524 aa11.71□□□□□ -0.53
USP28-209ENST00000540925 ACP7Q6ZNF0 438 aa11.71□□□□□ -0.53
USP28-209ENST00000540925 SYS1Q8N2H4 156 aa11.71□□□□□ -0.53
USP28-209ENST00000540925 PACRGLQ8N7B6 248 aa11.71□□□□□ -0.53
USP28-209ENST00000540925 ST8SIA4Q92187 359 aa11.71□□□□□ -0.53
USP28-209ENST00000540925 DCTN5Q9BTE1 182 aa11.71□□□□□ -0.53
USP28-209ENST00000540925 JAM3Q9BX67 310 aa11.71□□□□□ -0.53
USP28-209ENST00000540925 PKIBQ9C010 78 aa11.71□□□□□ -0.53
USP28-209ENST00000540925 AMBNQ9NP70 447 aa11.71□□□□□ -0.53
USP28-209ENST00000540925 INPP5EQ9NRR6 644 aa11.71□□□□□ -0.53
USP28-209ENST00000540925 DNAJB11Q9UBS4 358 aa11.71□□□□□ -0.53
USP28-209ENST00000540925 MAB21L2Q9Y586 359 aa11.71□□□□□ -0.53
USP28-209ENST00000540925 IGHV3OR16-10A0A075B7F0 116 aa11.7□□□□□ -0.54
USP28-209ENST00000540925 CENPVL3A0A0U1RRI6 287 aa11.7□□□□□ -0.54
USP28-209ENST00000540925 OR4C45A6NMZ5 311 aa11.7□□□□□ -0.54
USP28-209ENST00000540925 NDUFB3O43676 98 aa11.7□□□□□ -0.54
USP28-209ENST00000540925 COMPP49747 757 aaPredicted RBP11.7□□□□□ -0.54
USP28-209ENST00000540925 ACTA2P62736 377 aa11.7□□□□□ -0.54
USP28-209ENST00000540925 UBA52P62987 128 aaKnown RBP11.7□□□□□ -0.54
USP28-209ENST00000540925 ACTG2P63267 376 aa11.7□□□□□ -0.54
USP28-209ENST00000540925 ADARB1P78563 741 aaKnown RBP11.7□□□□□ -0.54
USP28-209ENST00000540925 IL24Q13007 206 aa11.7□□□□□ -0.54
USP28-209ENST00000540925 SMN1Q16637 294 aaKnown RBP11.7□□□□□ -0.54
USP28-209ENST00000540925 ZNF691Q5VV52 312 aa11.7□□□□□ -0.54
USP28-209ENST00000540925 TMEM244Q5VVB8 128 aa11.7□□□□□ -0.54
USP28-209ENST00000540925 LHFPL3Q86UP9 236 aa11.7□□□□□ -0.54
USP28-209ENST00000540925 OR52I1Q8NGK6 324 aa11.7□□□□□ -0.54
USP28-209ENST00000540925 TMIGD2Q96BF3 282 aa11.7□□□□□ -0.54
USP28-209ENST00000540925 ADAT3Q96EY9 351 aaPredicted RBP11.7□□□□□ -0.54
USP28-209ENST00000540925 MED30Q96HR3 178 aa11.7□□□□□ -0.54
USP28-209ENST00000540925 C4orf36Q96KX1 117 aa11.7□□□□□ -0.54
USP28-209ENST00000540925 ZNF488Q96MN9 340 aa11.7□□□□□ -0.54
USP28-209ENST00000540925 CNTD2Q9H8S5 307 aa11.7□□□□□ -0.54
USP28-209ENST00000540925 C8orf4Q9NR00 106 aa11.7□□□□□ -0.54
USP28-209ENST00000540925 ERVK13-1Q9NX77 482 aa11.7□□□□□ -0.54
USP28-209ENST00000540925 KPTNQ9Y664 436 aa11.7□□□□□ -0.54
USP28-209ENST00000540925 IGKV1-9A0A0C4DH69 117 aa11.69□□□□□ -0.54
USP28-209ENST00000540925 NKX6-3A6NJ46 265 aa11.69□□□□□ -0.54
USP28-209ENST00000540925 H3BSH0 61 aa11.69□□□□□ -0.54
USP28-209ENST00000540925 CLDN34H7C241 214 aa11.69□□□□□ -0.54
USP28-209ENST00000540925 TRIM77I1YAP6 450 aa11.69□□□□□ -0.54
USP28-209ENST00000540925 CASQ2O14958 399 aaPredicted RBP11.69□□□□□ -0.54
USP28-209ENST00000540925 TOX4O94842 621 aa11.69□□□□□ -0.54
USP28-209ENST00000540925 FADS2O95864 444 aaKnown RBP11.69□□□□□ -0.54
USP28-209ENST00000540925 LIMS3P0CW19 117 aa11.69□□□□□ -0.54
USP28-209ENST00000540925 LIMS4P0CW20 117 aa11.69□□□□□ -0.54
USP28-209ENST00000540925 PEX2P28328 305 aa11.69□□□□□ -0.54
USP28-209ENST00000540925 ARF6P62330 175 aa11.69□□□□□ -0.54
USP28-209ENST00000540925 IKZF1Q13422 519 aa11.69□□□□□ -0.54
USP28-209ENST00000540925 RCN1Q15293 331 aa11.69□□□□□ -0.54
USP28-209ENST00000540925 LRRC10Q5BKY1 277 aa11.69□□□□□ -0.54
USP28-209ENST00000540925 OGFRL1Q5TC84 451 aaPredicted RBP11.69□□□□□ -0.54
USP28-209ENST00000540925 BRD3OSQ6XYD6 125 aa11.69□□□□□ -0.54
USP28-209ENST00000540925 UTS2BQ765I0 119 aa11.69□□□□□ -0.54
USP28-209ENST00000540925 ANGPTL5Q86XS5 388 aa11.69□□□□□ -0.54
USP28-209ENST00000540925 CD177Q8N6Q3 437 aa11.69□□□□□ -0.54
USP28-209ENST00000540925 KIR3DL3Q8N743 410 aa11.69□□□□□ -0.54
USP28-209ENST00000540925 Q8N7P7 452 aa11.69□□□□□ -0.54
USP28-209ENST00000540925 OR10AC1Q8NH08 325 aa11.69□□□□□ -0.54
USP28-209ENST00000540925 PP6455Q8WZ26 134 aa11.69□□□□□ -0.54
USP28-209ENST00000540925 PCGF1Q9BSM1 259 aa11.69□□□□□ -0.54
USP28-209ENST00000540925 ALG8Q9BVK2 526 aa11.69□□□□□ -0.54
USP28-209ENST00000540925 MS4A7Q9GZW8 240 aaPredicted RBP11.69□□□□□ -0.54
USP28-209ENST00000540925 ISG20L2Q9H9L3 353 aaKnown RBP11.69□□□□□ -0.54
USP28-209ENST00000540925 PLEKHA1Q9HB21 404 aa11.69□□□□□ -0.54
USP28-209ENST00000540925 FGF20Q9NP95 211 aaPredicted RBP11.69□□□□□ -0.54
USP28-209ENST00000540925 SLC25A10Q9UBX3 287 aaPredicted RBP11.69□□□□□ -0.54
USP28-209ENST00000540925 POLDIP2Q9Y2S7 368 aa11.69□□□□□ -0.54
USP28-209ENST00000540925 RPL36Q9Y3U8 105 aaKnown RBP11.69□□□□□ -0.54
USP28-209ENST00000540925 TMEM89A2RUT3 159 aa11.68□□□□□ -0.54
USP28-209ENST00000540925 DNAJC9-AS1A6NH13 148 aa11.68□□□□□ -0.54
USP28-209ENST00000540925 J3QLW9 94 aa11.68□□□□□ -0.54
USP28-209ENST00000540925 GATBO75879 557 aaKnown RBP11.68□□□□□ -0.54
USP28-209ENST00000540925 CLIC3O95833 236 aa11.68□□□□□ -0.54
USP28-209ENST00000540925 HTR1AP08908 422 aa11.68□□□□□ -0.54
USP28-209ENST00000540925 ZNF19P17023 458 aa11.68□□□□□ -0.54
USP28-209ENST00000540925 PRTN3P24158 256 aa11.68□□□□□ -0.54
USP28-209ENST00000540925 FUT6P51993 359 aa11.68□□□□□ -0.54
USP28-209ENST00000540925 ALKBH1Q13686 389 aaKnown RBP11.68□□□□□ -0.54
USP28-209ENST00000540925 PDCD1Q15116 288 aa11.68□□□□□ -0.54
USP28-209ENST00000540925 LRRC36Q1X8D7 754 aa11.68□□□□□ -0.54
USP28-209ENST00000540925 SMIM21Q3B7S5 101 aa11.68□□□□□ -0.54
USP28-209ENST00000540925 METTL11BQ5VVY1 283 aa11.68□□□□□ -0.54
USP28-209ENST00000540925 CRIP3Q6Q6R5 217 aa11.68□□□□□ -0.54
USP28-209ENST00000540925 METAP1DQ6UB28 335 aaPredicted RBP11.68□□□□□ -0.54
USP28-209ENST00000540925 C1orf122Q6ZSJ8 110 aa11.68□□□□□ -0.54
USP28-209ENST00000540925 ZNRF1Q8ND25 227 aa11.68□□□□□ -0.54
USP28-209ENST00000540925 DNAAF1Q8NEP3 725 aa11.68□□□□□ -0.54
USP28-209ENST00000540925 OR51A4Q8NGJ6 313 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms