RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 ZNF775Q96BV0 537 aaPredicted RBP12.34□□□□□ -0.43
LIG1-203ENST00000536218 PBDC1Q9BVG4 233 aa12.34□□□□□ -0.43
LIG1-203ENST00000536218 H3BQ15 152 aa12.33□□□□□ -0.44
LIG1-203ENST00000536218 RPL36A-HNRNPH2H7BZ11 118 aa12.33□□□□□ -0.44
LIG1-203ENST00000536218 K7EPK0 472 aa12.33□□□□□ -0.44
LIG1-203ENST00000536218 RPL29P47914 159 aaKnown RBP12.33□□□□□ -0.44
LIG1-203ENST00000536218 NPY4RP50391 375 aa12.33□□□□□ -0.44
LIG1-203ENST00000536218 LPAL2Q16609 132 aa12.33□□□□□ -0.44
LIG1-203ENST00000536218 FAM71E2Q8N5Q1 922 aa12.33□□□□□ -0.44
LIG1-203ENST00000536218 DEFB123Q8N688 67 aa12.33□□□□□ -0.44
LIG1-203ENST00000536218 ZNF248Q8NDW4 579 aa12.33□□□□□ -0.44
LIG1-203ENST00000536218 ALG12Q9BV10 488 aa12.33□□□□□ -0.44
LIG1-203ENST00000536218 OR11A1Q9GZK7 315 aa12.33□□□□□ -0.44
LIG1-203ENST00000536218 GRHPRQ9UBQ7 328 aa12.33□□□□□ -0.44
LIG1-203ENST00000536218 H0YL77 283 aa12.33□□□□□ -0.44
LIG1-203ENST00000536218 SLC17A2O00624 439 aa12.33□□□□□ -0.44
LIG1-203ENST00000536218 PGA3P0DJD8 388 aa12.33□□□□□ -0.44
LIG1-203ENST00000536218 RPL12P30050 165 aaKnown RBP12.33□□□□□ -0.44
LIG1-203ENST00000536218 MAS1LP35410 378 aa12.33□□□□□ -0.44
LIG1-203ENST00000536218 TDGF1P3P51864 188 aa12.33□□□□□ -0.44
LIG1-203ENST00000536218 BATFQ16520 125 aa12.33□□□□□ -0.44
LIG1-203ENST00000536218 NCR3LG1Q68D85 454 aa12.33□□□□□ -0.44
LIG1-203ENST00000536218 ZNF101Q8IZC7 436 aa12.33□□□□□ -0.44
LIG1-203ENST00000536218 RNF166Q96A37 237 aaPredicted RBP12.33□□□□□ -0.44
LIG1-203ENST00000536218 LUZP4Q9P127 313 aa12.33□□□□□ -0.44
LIG1-203ENST00000536218 RAB22AQ9UL26 194 aa12.33□□□□□ -0.44
LIG1-203ENST00000536218 CCDC187A0A096LP49 1063 aa12.32□□□□□ -0.44
LIG1-203ENST00000536218 TRBV5-5A0A0J9YX44 114 aa12.32□□□□□ -0.44
LIG1-203ENST00000536218 ATXN7O15265 892 aaPredicted RBP12.32□□□□□ -0.44
LIG1-203ENST00000536218 DOK2O60496 412 aa12.32□□□□□ -0.44
LIG1-203ENST00000536218 TSPAN2O60636 221 aa12.32□□□□□ -0.44
LIG1-203ENST00000536218 UPK3AO75631 287 aa12.32□□□□□ -0.44
LIG1-203ENST00000536218 FBXW4P57775 412 aa12.32□□□□□ -0.44
LIG1-203ENST00000536218 ZDHHC22Q8N966 263 aa12.32□□□□□ -0.44
LIG1-203ENST00000536218 HPSE2Q8WWQ2 592 aa12.32□□□□□ -0.44
LIG1-203ENST00000536218 ASCL3Q9NQ33 180 aa12.32□□□□□ -0.44
LIG1-203ENST00000536218 TAAR5O14804 337 aa12.32□□□□□ -0.44
LIG1-203ENST00000536218 SCGB1D2O95969 90 aa12.32□□□□□ -0.44
LIG1-203ENST00000536218 HKR1P10072 659 aa12.32□□□□□ -0.44
LIG1-203ENST00000536218 GP1BBP13224 206 aa12.32□□□□□ -0.44
LIG1-203ENST00000536218 PPP1CCP36873 323 aaKnown RBP12.32□□□□□ -0.44
LIG1-203ENST00000536218 TMEM33P57088 247 aa12.32□□□□□ -0.44
LIG1-203ENST00000536218 INSM1Q01101 510 aaPredicted RBP12.32□□□□□ -0.44
LIG1-203ENST00000536218 TMEM268Q5VZI3 342 aa12.32□□□□□ -0.44
LIG1-203ENST00000536218 RHBDD2Q6NTF9 364 aa12.32□□□□□ -0.44
LIG1-203ENST00000536218 TIPARPQ7Z3E1 657 aaKnown RBP12.32□□□□□ -0.44
LIG1-203ENST00000536218 MDGA2Q7Z553 956 aa12.32□□□□□ -0.44
LIG1-203ENST00000536218 FAM46BQ96A09 425 aa12.32□□□□□ -0.44
LIG1-203ENST00000536218 SLCO5A1Q9H2Y9 848 aa12.32□□□□□ -0.44
LIG1-203ENST00000536218 RARRES3Q9UL19 164 aa12.32□□□□□ -0.44
LIG1-203ENST00000536218 ARPC3O15145 178 aa12.32□□□□□ -0.44
LIG1-203ENST00000536218 JTBO76095 146 aa12.32□□□□□ -0.44
LIG1-203ENST00000536218 IL18BPO95998 194 aa12.32□□□□□ -0.44
LIG1-203ENST00000536218 PET100P0DJ07 73 aa12.32□□□□□ -0.44
LIG1-203ENST00000536218 DCAF7P61962 342 aa12.32□□□□□ -0.44
LIG1-203ENST00000536218 RPS4XP62701 263 aaKnown RBP12.32□□□□□ -0.44
LIG1-203ENST00000536218 SLC22A25Q6T423 547 aa12.32□□□□□ -0.44
LIG1-203ENST00000536218 FAM213BQ8TBF2 198 aa12.32□□□□□ -0.44
LIG1-203ENST00000536218 SAP25Q8TEE9 199 aa12.32□□□□□ -0.44
LIG1-203ENST00000536218 METTL21AQ8WXB1 218 aa12.32□□□□□ -0.44
LIG1-203ENST00000536218 PPP1R14AQ96A00 147 aa12.32□□□□□ -0.44
LIG1-203ENST00000536218 GPR87Q9BY21 358 aa12.32□□□□□ -0.44
LIG1-203ENST00000536218 IGHV5-10-1A0A0J9YXX1 117 aa12.31□□□□□ -0.44
LIG1-203ENST00000536218 OR4C45A6NMZ5 311 aa12.31□□□□□ -0.44
LIG1-203ENST00000536218 TGOLN2O43493 480 aa12.31□□□□□ -0.44
LIG1-203ENST00000536218 TCF21O43680 179 aa12.31□□□□□ -0.44
LIG1-203ENST00000536218 DLK1P80370 383 aa12.31□□□□□ -0.44
LIG1-203ENST00000536218 SQSTM1Q13501 440 aa12.31□□□□□ -0.44
LIG1-203ENST00000536218 GGTLC2Q14390 218 aa12.31□□□□□ -0.44
LIG1-203ENST00000536218 SSPNQ14714 243 aa12.31□□□□□ -0.44
LIG1-203ENST00000536218 ARSJQ5FYB0 599 aaPredicted RBP12.31□□□□□ -0.44
LIG1-203ENST00000536218 KMT5CQ86Y97 462 aa12.31□□□□□ -0.44
LIG1-203ENST00000536218 OR6N2Q8NGY6 317 aa12.31□□□□□ -0.44
LIG1-203ENST00000536218 CCDC74BQ96LY2 380 aa12.31□□□□□ -0.44
LIG1-203ENST00000536218 HIF3AQ9Y2N7 669 aa12.31□□□□□ -0.44
LIG1-203ENST00000536218 LSM5Q9Y4Y9 91 aaKnown RBP12.31□□□□□ -0.44
LIG1-203ENST00000536218 GPR179Q6PRD1 2367 aa12.31□□□□□ -0.44
LIG1-203ENST00000536218 NCOR1O75376 2440 aa12.31□□□□□ -0.44
LIG1-203ENST00000536218 ALG1L2C9J202 215 aa12.31□□□□□ -0.44
LIG1-203ENST00000536218 LDLRAD4O15165 306 aa12.31□□□□□ -0.44
LIG1-203ENST00000536218 ASAH2BP0C7U1 165 aa12.31□□□□□ -0.44
LIG1-203ENST00000536218 PGCP20142 388 aa12.31□□□□□ -0.44
LIG1-203ENST00000536218 SCAND1P57086 179 aa12.31□□□□□ -0.44
LIG1-203ENST00000536218 CLEC18BQ6UXF7 455 aa12.31□□□□□ -0.44
LIG1-203ENST00000536218 ZNF705AQ6ZN79 300 aaPredicted RBP12.31□□□□□ -0.44
LIG1-203ENST00000536218 LRRC69Q6ZNQ3 347 aa12.31□□□□□ -0.44
LIG1-203ENST00000536218 HSD17B11Q8NBQ5 300 aa12.31□□□□□ -0.44
LIG1-203ENST00000536218 FAM210BQ96KR6 192 aa12.31□□□□□ -0.44
LIG1-203ENST00000536218 DUSP23Q9BVJ7 150 aa12.31□□□□□ -0.44
LIG1-203ENST00000536218 SCRT1Q9BWW7 348 aa12.31□□□□□ -0.44
LIG1-203ENST00000536218 OCIAD1Q9NX40 245 aa12.31□□□□□ -0.44
LIG1-203ENST00000536218 SRPK3Q9UPE1 567 aa12.31□□□□□ -0.44
LIG1-203ENST00000536218 VDAC3Q9Y277 283 aa12.31□□□□□ -0.44
LIG1-203ENST00000536218 RCL1Q9Y2P8 373 aaKnown RBP12.31□□□□□ -0.44
LIG1-203ENST00000536218 LY6G6EA0A0G2JKS1 128 aa12.3□□□□□ -0.44
LIG1-203ENST00000536218 SYT7O43581 403 aa12.3□□□□□ -0.44
LIG1-203ENST00000536218 HLA-DQA2P01906 255 aa12.3□□□□□ -0.44
LIG1-203ENST00000536218 EMP2P54851 167 aa12.3□□□□□ -0.44
LIG1-203ENST00000536218 PMS2CLQ68D20 193 aa12.3□□□□□ -0.44
LIG1-203ENST00000536218 SLC35G3Q8N808 338 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms