RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 PAX5Q02548 391 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 EMX1Q04741 257 aaPredicted RBP2.76□□□□□ -1.97
CD44-217ENST00000525348 MXD1Q05195 221 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 SRSF6Q13247 344 aaKnown RBP2.76□□□□□ -1.97
CD44-217ENST00000525348 PTGES3Q15185 160 aaKnown RBP2.76□□□□□ -1.97
CD44-217ENST00000525348 SURF2Q15527 256 aaPredicted RBP2.76□□□□□ -1.97
CD44-217ENST00000525348 VAMP3Q15836 100 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 EXOC3L2Q2M3D2 409 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 ZNF181Q2M3W8 571 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 ZNF699Q32M78 642 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 PLPPR5Q32ZL2 321 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 ADPRMQ3LIE5 342 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 CCSMST1Q4G0I0 132 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 ZNF789Q5FWF6 425 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 TMEM42Q69YG0 159 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 FAM45BPQ6NSW5 357 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 CASP12Q6UXS9 341 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 LANCL3Q6ZV70 420 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 HSD17B13Q7Z5P4 300 aaPredicted RBP2.76□□□□□ -1.97
CD44-217ENST00000525348 LINC01551Q86U37 167 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 NAA40Q86UY6 237 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 SKA3Q8IX90 412 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 BAP18Q8IXM2 172 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 RIMKLAQ8IXN7 391 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 ATPAF2Q8N5M1 289 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 CSNK1A1LQ8N752 337 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 ZSCAN4Q8NAM6 433 aaPredicted RBP2.76□□□□□ -1.97
CD44-217ENST00000525348 NECAP1Q8NC96 275 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 OR4F15Q8NGB8 312 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 OR10G3Q8NGC4 313 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 OR2AP1Q8NGE2 309 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 OR5L2Q8NGL0 311 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 OR8U1Q8NH10 309 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 UBTD2Q8WUN7 234 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 ASB17Q8WXJ9 295 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 ST8SIA1Q92185 356 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 RGP1Q92546 391 aaPredicted RBP2.76□□□□□ -1.97
CD44-217ENST00000525348 RPL3LQ92901 407 aaKnown RBP2.76□□□□□ -1.97
CD44-217ENST00000525348 MYLPFQ96A32 169 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 WDR34Q96EX3 536 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 SFRP2Q96HF1 295 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 ITCHQ96J02 903 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 SMIM8Q96KF7 97 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 CAPNS2Q96L46 248 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 SENP8Q96LD8 212 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 PHB2Q99623 299 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 RBBP8Q99708 897 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 VPS25Q9BRG1 176 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 MAP1LC3CQ9BXW4 147 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 TBL1XR1Q9BZK7 514 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 CHST5Q9GZS9 411 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 BOLA2Q9H3K6 86 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 Q9H521 79 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 PTGES2Q9H7Z7 377 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 AKIRIN1Q9H9L7 192 aaPredicted RBP2.76□□□□□ -1.97
CD44-217ENST00000525348 Q9HAA7 133 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 EFCAB1Q9HAE3 211 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 CACYBPQ9HB71 228 aaKnown RBP2.76□□□□□ -1.97
CD44-217ENST00000525348 ADGRL4Q9HBW9 690 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 POLE4Q9NR33 117 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 PXMP2Q9NR77 195 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 SEC14L3Q9UDX4 400 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 GNG8Q9UK08 70 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 VPREB3Q9UKI3 123 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 RNF11Q9Y3C5 154 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 ATG4BQ9Y4P1 393 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 CSDC2Q9Y534 153 aaKnown RBP2.76□□□□□ -1.97
CD44-217ENST00000525348 AP4S1Q9Y587 144 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 BTAF1O14981 1849 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 SIPA1L1O43166 1804 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 KCPQ6ZWJ8 1503 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 TULP4Q9NRJ4 1543 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 PKD1L3Q7Z443 1732 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 PLXND1Q9Y4D7 1925 aa2.76□□□□□ -1.97
CD44-217ENST00000525348 TANC1Q9C0D5 1861 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 RGPD5Q99666 1765 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 IGHV3OR16-12A0A075B7B8 117 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 A0A1B0GUS0 222 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 A0A1W2PPE3 182 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 DFFAO00273 331 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 RFXANKO14593 260 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 MRASO14807 208 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 RS1O15537 224 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 XRCC2O43543 280 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 CDC40O60508 579 aaKnown RBP eCLIP2.75□□□□□ -1.97
CD44-217ENST00000525348 TM7SF2O76062 418 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 FADS2O95864 444 aaKnown RBP2.75□□□□□ -1.97
CD44-217ENST00000525348 IGSF6O95976 241 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 IGHV3-9P01782 118 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 IGHG4P01861 327 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 FTH1P02794 183 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 SERPIND1P05546 499 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 P0C879 139 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 TDGF1P13385 188 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 HSD17B1P14061 328 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 AKR1C4P17516 323 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 GPX2P18283 190 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 MAGEA12P43365 314 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 GCLMP48507 274 aa2.75□□□□□ -1.97
CD44-217ENST00000525348 RORCP51449 518 aa2.75□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms