RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 NINJ1Q92982 152 aa10.33□□□□□ -0.76
SDC1-206ENST00000482879 YIPF5Q969M3 257 aa10.33□□□□□ -0.76
SDC1-206ENST00000482879 ISOC1Q96CN7 298 aa10.33□□□□□ -0.76
SDC1-206ENST00000482879 PERPQ96FX8 193 aa10.33□□□□□ -0.76
SDC1-206ENST00000482879 UQCC2Q9BRT2 126 aa10.33□□□□□ -0.76
SDC1-206ENST00000482879 GSX2Q9BZM3 304 aa10.33□□□□□ -0.76
SDC1-206ENST00000482879 PKIBQ9C010 78 aa10.33□□□□□ -0.76
SDC1-206ENST00000482879 CNTD2Q9H8S5 307 aa10.33□□□□□ -0.76
SDC1-206ENST00000482879 BARX1Q9HBU1 254 aaPredicted RBP10.33□□□□□ -0.76
SDC1-206ENST00000482879 DLL4Q9NR61 685 aa10.33□□□□□ -0.76
SDC1-206ENST00000482879 NDUFA13Q9P0J0 144 aa10.33□□□□□ -0.76
SDC1-206ENST00000482879 CACNG2Q9Y698 323 aa10.33□□□□□ -0.76
SDC1-206ENST00000482879 SMIM31A0A1B0GVY4 71 aa10.32□□□□□ -0.76
SDC1-206ENST00000482879 LRRC30A6NM36 301 aa10.32□□□□□ -0.76
SDC1-206ENST00000482879 IFNL4K9M1U5 179 aa10.32□□□□□ -0.76
SDC1-206ENST00000482879 ANGPTL7O43827 346 aa10.32□□□□□ -0.76
SDC1-206ENST00000482879 SSX4O60224 188 aa10.32□□□□□ -0.76
SDC1-206ENST00000482879 CYB5R3P00387 301 aaPredicted RBP10.32□□□□□ -0.76
SDC1-206ENST00000482879 CD37P11049 281 aa10.32□□□□□ -0.76
SDC1-206ENST00000482879 MPZP25189 248 aa10.32□□□□□ -0.76
SDC1-206ENST00000482879 RBMXP38159 391 aaKnown RBP10.32□□□□□ -0.76
SDC1-206ENST00000482879 RPS19P39019 145 aaKnown RBP10.32□□□□□ -0.76
SDC1-206ENST00000482879 PTGFRP43088 359 aa10.32□□□□□ -0.76
SDC1-206ENST00000482879 OR3A4PP47883 348 aa10.32□□□□□ -0.76
SDC1-206ENST00000482879 CAV3P56539 151 aa10.32□□□□□ -0.76
SDC1-206ENST00000482879 ZP1P60852 638 aa10.32□□□□□ -0.76
SDC1-206ENST00000482879 MRPS11P82912 194 aaKnown RBP10.32□□□□□ -0.76
SDC1-206ENST00000482879 IL24Q13007 206 aa10.32□□□□□ -0.76
SDC1-206ENST00000482879 CARTPTQ16568 116 aa10.32□□□□□ -0.76
SDC1-206ENST00000482879 DEFB113Q30KQ7 82 aa10.32□□□□□ -0.76
SDC1-206ENST00000482879 C1orf100Q5SVJ3 147 aa10.32□□□□□ -0.76
SDC1-206ENST00000482879 USP43Q70EL4 1123 aa10.32□□□□□ -0.76
SDC1-206ENST00000482879 C1QL2Q7Z5L3 287 aa10.32□□□□□ -0.76
SDC1-206ENST00000482879 CDH24Q86UP0 819 aa10.32□□□□□ -0.76
SDC1-206ENST00000482879 LYPD6Q86Y78 171 aa10.32□□□□□ -0.76
SDC1-206ENST00000482879 BOLLQ8N9W6 283 aaKnown RBP10.32□□□□□ -0.76
SDC1-206ENST00000482879 ZSCAN4Q8NAM6 433 aaPredicted RBP10.32□□□□□ -0.76
SDC1-206ENST00000482879 OR51F2Q8NH61 342 aa10.32□□□□□ -0.76
SDC1-206ENST00000482879 Q8TCH9 128 aa10.32□□□□□ -0.76
SDC1-206ENST00000482879 LRRC29Q8WV35 223 aa10.32□□□□□ -0.76
SDC1-206ENST00000482879 HPS1Q92902 700 aa10.32□□□□□ -0.76
SDC1-206ENST00000482879 SLAMF9Q96A28 289 aa10.32□□□□□ -0.76
SDC1-206ENST00000482879 MBD6Q96DN6 1003 aa10.32□□□□□ -0.76
SDC1-206ENST00000482879 FAM192AQ9GZU8 254 aa10.32□□□□□ -0.76
SDC1-206ENST00000482879 RBM38Q9H0Z9 239 aaKnown RBP10.32□□□□□ -0.76
SDC1-206ENST00000482879 PLGRKTQ9HBL7 147 aa10.32□□□□□ -0.76
SDC1-206ENST00000482879 TMEM106BQ9NUM4 274 aa10.32□□□□□ -0.76
SDC1-206ENST00000482879 DCAF16Q9NXF7 216 aa10.32□□□□□ -0.76
SDC1-206ENST00000482879 RNF7Q9UBF6 113 aa10.32□□□□□ -0.76
SDC1-206ENST00000482879 ING4Q9UNL4 249 aa10.32□□□□□ -0.76
SDC1-206ENST00000482879 MRPS28Q9Y2Q9 187 aaKnown RBP10.32□□□□□ -0.76
SDC1-206ENST00000482879 POLDIP2Q9Y2S7 368 aa10.32□□□□□ -0.76
SDC1-206ENST00000482879 A0A0G2JK05 382 aa10.31□□□□□ -0.76
SDC1-206ENST00000482879 NOTOA8MTQ0 251 aa10.31□□□□□ -0.76
SDC1-206ENST00000482879 H3BMQ9 156 aa10.31□□□□□ -0.76
SDC1-206ENST00000482879 TRAPPC2LH3BP13 241 aa10.31□□□□□ -0.76
SDC1-206ENST00000482879 SLC17A2O00624 439 aa10.31□□□□□ -0.76
SDC1-206ENST00000482879 SLC22A1O15245 554 aa10.31□□□□□ -0.76
SDC1-206ENST00000482879 AKR7A2O43488 359 aa10.31□□□□□ -0.76
SDC1-206ENST00000482879 IL1AP01583 271 aa10.31□□□□□ -0.76
SDC1-206ENST00000482879 HTR2CP28335 458 aa10.31□□□□□ -0.76
SDC1-206ENST00000482879 CFHR2P36980 270 aa10.31□□□□□ -0.76
SDC1-206ENST00000482879 GMFBP60983 142 aa10.31□□□□□ -0.76
SDC1-206ENST00000482879 RIN1Q13671 783 aa10.31□□□□□ -0.76
SDC1-206ENST00000482879 RAB11BQ15907 218 aa10.31□□□□□ -0.76
SDC1-206ENST00000482879 ZNF181Q2M3W8 571 aa10.31□□□□□ -0.76
SDC1-206ENST00000482879 HES5Q5TA89 166 aa10.31□□□□□ -0.76
SDC1-206ENST00000482879 AWAT2Q6E213 333 aa10.31□□□□□ -0.76
SDC1-206ENST00000482879 NR2C2APQ86WQ0 139 aa10.31□□□□□ -0.76
SDC1-206ENST00000482879 SAXO1Q8IYX7 474 aa10.31□□□□□ -0.76
SDC1-206ENST00000482879 C1orf87Q8N0U7 546 aa10.31□□□□□ -0.76
SDC1-206ENST00000482879 OR4D6Q8NGJ1 314 aa10.31□□□□□ -0.76
SDC1-206ENST00000482879 OR10Z1Q8NGY1 313 aa10.31□□□□□ -0.76
SDC1-206ENST00000482879 NDNFQ8TB73 568 aa10.31□□□□□ -0.76
SDC1-206ENST00000482879 C12orf43Q96C57 262 aaKnown RBP10.31□□□□□ -0.76
SDC1-206ENST00000482879 ZNF488Q96MN9 340 aa10.31□□□□□ -0.76
SDC1-206ENST00000482879 S100A13Q99584 98 aa10.31□□□□□ -0.76
SDC1-206ENST00000482879 DCSTAMPQ9H295 470 aa10.31□□□□□ -0.76
SDC1-206ENST00000482879 ELL3Q9HB65 397 aaPredicted RBP10.31□□□□□ -0.76
SDC1-206ENST00000482879 MTCH1Q9NZJ7 389 aa10.31□□□□□ -0.76
SDC1-206ENST00000482879 RSL24D1Q9UHA3 163 aaKnown RBP10.31□□□□□ -0.76
SDC1-206ENST00000482879 DOCK11Q5JSL3 2073 aa10.3□□□□□ -0.76
SDC1-206ENST00000482879 NOTCH2Q04721 2471 aa10.3□□□□□ -0.76
SDC1-206ENST00000482879 IGKV1-12A0A0C4DH73 117 aa10.3□□□□□ -0.76
SDC1-206ENST00000482879 IFITM5A6NNB3 132 aa10.3□□□□□ -0.76
SDC1-206ENST00000482879 C3orf80F5H4A9 247 aa10.3□□□□□ -0.76
SDC1-206ENST00000482879 TMEM178BH3BS89 294 aa10.3□□□□□ -0.76
SDC1-206ENST00000482879 RP2O75695 350 aa10.3□□□□□ -0.76
SDC1-206ENST00000482879 LHBP01229 141 aa10.3□□□□□ -0.76
SDC1-206ENST00000482879 IGKV1D-12P01611 117 aa10.3□□□□□ -0.76
SDC1-206ENST00000482879 ACAA1P09110 424 aaPredicted RBP10.3□□□□□ -0.76
SDC1-206ENST00000482879 PGA5P0DJD9 388 aa10.3□□□□□ -0.76
SDC1-206ENST00000482879 BCL3P20749 454 aa10.3□□□□□ -0.76
SDC1-206ENST00000482879 PDLIM4P50479 330 aa10.3□□□□□ -0.76
SDC1-206ENST00000482879 SPCS2Q15005 226 aa10.3□□□□□ -0.76
SDC1-206ENST00000482879 P2RY14Q15391 338 aa10.3□□□□□ -0.76
SDC1-206ENST00000482879 RSU1Q15404 277 aa10.3□□□□□ -0.76
SDC1-206ENST00000482879 FAM201AQ5SY85 155 aa10.3□□□□□ -0.76
SDC1-206ENST00000482879 SFXN4Q6P4A7 337 aa10.3□□□□□ -0.76
SDC1-206ENST00000482879 GLIPR1L1Q6UWM5 242 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms