RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 SMPD2O60906 423 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 MTRF1O75570 445 aaKnown RBP3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 PLAUP00749 431 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 IGKV3-15P01624 115 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 IGLV1-44P01699 117 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 CD2P06729 351 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 HCKP08631 526 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 UBCP0CG48 685 aaKnown RBP3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 RNF224P0DH78 156 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 ZNF35P13682 527 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 CD53P19397 219 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 SRMP19623 302 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 MYL9P24844 172 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 PTAFRP25105 342 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 GCH1P30793 250 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 OTX1P32242 354 aaPredicted RBP3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 SDC2P34741 201 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 MPV17P39210 176 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 TMBIM6P55061 237 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 RPS11P62280 158 aaKnown RBP eCLIP3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 FAM3AP98173 230 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 BSPH1Q075Z2 132 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 RIPPLY1Q0D2K3 151 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 SNTB2Q13425 540 aaKnown RBP3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 GK2Q14410 553 aaPredicted RBP3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 SPCS2Q15005 226 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 CNPY1Q3B7I2 92 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 KRTAP27-1Q3LI81 207 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 ZNF718Q3SXZ3 478 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 AWAT1Q58HT5 328 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 CEP78Q5JTW2 689 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 ADAM5Q6NVV9 412 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 PAMR1Q6UXH9 720 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 UNQ9370/PRO34162Q6UXP9 181 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 UNQ6126/PRO20091Q6UXV3 157 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 ZNF782Q6ZMW2 699 aaPredicted RBP3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 MEX3BQ6ZN04 569 aaKnown RBP3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 GDPGP1Q6ZNW5 385 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 SLC16A12Q6ZSM3 486 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 RFPL4BQ6ZWI9 263 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 PRSS45Q7RTY3 260 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 LRP11Q86VZ4 500 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 EGFL6Q8IUX8 553 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 SERPINA12Q8IW75 414 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 ZNF101Q8IZC7 436 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 BHLHE23Q8NDY6 225 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 DNAAF1Q8NEP3 725 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 OR52H1Q8NGJ2 320 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 SYNPRQ8TBG9 265 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 TRMT10AQ8TBZ6 339 aaKnown RBP3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 RAB2BQ8WUD1 216 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 DPF1Q92782 380 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 NEUROG1Q92886 237 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 ADAT3Q96EY9 351 aaPredicted RBP3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 KCTD7Q96MP8 289 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 NKX3-1Q99801 234 aaPredicted RBP3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 FAM192AQ9GZU8 254 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 SLITRK2Q9H156 845 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 OR10A4Q9H209 315 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 DCSTAMPQ9H295 470 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 PPIL3Q9H2H8 161 aaKnown RBP3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 ESRP2Q9H6T0 727 aaKnown RBP3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 PPP1R3EQ9H7J1 279 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 MOB1AQ9H8S9 216 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 PLEKHA1Q9HB21 404 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 ZNF275Q9NSD4 429 aaPredicted RBP3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 LIN7CQ9NUP9 197 aaKnown RBP3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 CRNNQ9UBG3 495 aaPredicted RBP3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 SPENQ96T58 3664 aaKnown RBP3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 CFAP47Q6ZTR5 3102 aa3.48□□□□□ -1.85
TMEM39A-204ENST00000468545 RP1L1Q8IWN7 2480 aaPredicted RBP3.47□□□□□ -1.85
TMEM39A-204ENST00000468545 NCOA6Q14686 2063 aaPredicted RBP3.47□□□□□ -1.85
TMEM39A-204ENST00000468545 SPTA1P02549 2419 aa3.47□□□□□ -1.85
TMEM39A-204ENST00000468545 TRAV8-7A0A075B6U6 113 aa3.47□□□□□ -1.85
TMEM39A-204ENST00000468545 TRBV5-7A0A0A0MS05 114 aa3.47□□□□□ -1.85
TMEM39A-204ENST00000468545 TRBV5-5A0A0J9YX44 114 aa3.47□□□□□ -1.85
TMEM39A-204ENST00000468545 A0A0U1RQV5 110 aa3.47□□□□□ -1.85
TMEM39A-204ENST00000468545 hCG_38984A0A1B0GV85 526 aa3.47□□□□□ -1.85
TMEM39A-204ENST00000468545 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP3.47□□□□□ -1.85
TMEM39A-204ENST00000468545 A0A1W2PPW3 197 aa3.47□□□□□ -1.85
TMEM39A-204ENST00000468545 HMX3A6NHT5 357 aa3.47□□□□□ -1.85
TMEM39A-204ENST00000468545 ANXA2P2A6NMY6 339 aa3.47□□□□□ -1.85
TMEM39A-204ENST00000468545 ANKRD30BLA7E2S9 258 aa3.47□□□□□ -1.85
TMEM39A-204ENST00000468545 CD300LBA8K4G0 201 aa3.47□□□□□ -1.85
TMEM39A-204ENST00000468545 H0YL77 283 aa3.47□□□□□ -1.85
TMEM39A-204ENST00000468545 PRYO14603 147 aa3.47□□□□□ -1.85
TMEM39A-204ENST00000468545 PDCD5O14737 125 aa3.47□□□□□ -1.85
TMEM39A-204ENST00000468545 MAGEB3O15480 346 aa3.47□□□□□ -1.85
TMEM39A-204ENST00000468545 SPRY3O43610 288 aa3.47□□□□□ -1.85
TMEM39A-204ENST00000468545 GATBO75879 557 aaKnown RBP3.47□□□□□ -1.85
TMEM39A-204ENST00000468545 DHRS3O75911 302 aa3.47□□□□□ -1.85
TMEM39A-204ENST00000468545 ARL6IP5O75915 188 aa3.47□□□□□ -1.85
TMEM39A-204ENST00000468545 GABARAPO95166 117 aa3.47□□□□□ -1.85
TMEM39A-204ENST00000468545 NRASP01111 189 aa3.47□□□□□ -1.85
TMEM39A-204ENST00000468545 ISG15P05161 165 aa3.47□□□□□ -1.85
TMEM39A-204ENST00000468545 SLC2A2P11168 524 aaPredicted RBP3.47□□□□□ -1.85
TMEM39A-204ENST00000468545 PLA2G2AP14555 144 aa3.47□□□□□ -1.85
TMEM39A-204ENST00000468545 ZNF12P17014 697 aa3.47□□□□□ -1.85
TMEM39A-204ENST00000468545 ZNF182P17025 639 aaPredicted RBP3.47□□□□□ -1.85
TMEM39A-204ENST00000468545 ATF1P18846 271 aa3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms