RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 KIR3DX1Q9H7L2 352 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 TRIM45Q9H8W5 580 aaPredicted RBP3.24□□□□□ -1.89
VPS29-202ENST00000447578 ANKRA2Q9H9E1 313 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 CACYBPQ9HB71 228 aaKnown RBP3.24□□□□□ -1.89
VPS29-202ENST00000447578 BCL2L10Q9HD36 194 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 EXOSC4Q9NPD3 245 aaKnown RBP3.24□□□□□ -1.89
VPS29-202ENST00000447578 TAS2R7Q9NYW3 318 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 CCDC59Q9P031 241 aaKnown RBP3.24□□□□□ -1.89
VPS29-202ENST00000447578 CLEC2DQ9UHP7 191 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 PHF11Q9UIL8 331 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 IKZF2Q9UKS7 526 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 RPL36Q9Y3U8 105 aaKnown RBP3.24□□□□□ -1.89
VPS29-202ENST00000447578 HEBP2Q9Y5Z4 205 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 KCNE3Q9Y6H6 103 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 ZNF780BQ9Y6R6 833 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 HELZP42694 1942 aaKnown RBP3.24□□□□□ -1.89
VPS29-202ENST00000447578 PTPRSQ13332 1948 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 MUC22E2RYF6 1773 aaPredicted RBP3.23□□□□□ -1.89
VPS29-202ENST00000447578 IRGMA1A4Y4 181 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 ISPDA4D126 451 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 EPOPA6NHQ4 379 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 CPSF4LA6NMK7 179 aaKnown RBP3.23□□□□□ -1.89
VPS29-202ENST00000447578 LOC110117498-PIK3R3F6TDL0 507 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 SULT2B1O00204 365 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 WWP2O00308 870 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 CXCL13O43927 109 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 SCRG1O75711 98 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 KLF8O95600 359 aaPredicted RBP3.23□□□□□ -1.89
VPS29-202ENST00000447578 RAB36O95755 333 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 TSPAN19P0C672 248 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 CT45A10P0DMU9 189 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 MYL12AP19105 171 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 MAGP20916 626 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 GSTM3P21266 225 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 CPN2P22792 545 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 PSMA1P25786 263 aaKnown RBP3.23□□□□□ -1.89
VPS29-202ENST00000447578 GTF2E2P29084 291 aaKnown RBP3.23□□□□□ -1.89
VPS29-202ENST00000447578 FGF9P31371 208 aaPredicted RBP3.23□□□□□ -1.89
VPS29-202ENST00000447578 IFNA8P32881 189 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 CD80P33681 288 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 MPIP34949 423 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 ACTR1BP42025 376 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 DAP3P51398 398 aaKnown RBP3.23□□□□□ -1.89
VPS29-202ENST00000447578 RORCP51449 518 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 RGS8P57771 180 aaPredicted RBP3.23□□□□□ -1.89
VPS29-202ENST00000447578 RPS15AP62244 130 aaKnown RBP3.23□□□□□ -1.89
VPS29-202ENST00000447578 CDK5Q00535 292 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 ZNF45Q02386 682 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 MLLT11Q13015 90 aaPredicted RBP3.23□□□□□ -1.89
VPS29-202ENST00000447578 C1DQ13901 141 aaKnown RBP3.23□□□□□ -1.89
VPS29-202ENST00000447578 TRAM2Q15035 370 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 NCF4Q15080 339 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 SHHQ15465 462 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 ZNF181Q2M3W8 571 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 NHLRC3Q5JS37 347 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 CLEC12AQ5QGZ9 265 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 LEMD1Q68G75 181 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 C1orf94Q6P1W5 598 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 FAM199XQ6PEV8 388 aaPredicted RBP3.23□□□□□ -1.89
VPS29-202ENST00000447578 LUZP2Q86TE4 346 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 CYP4Z2PQ8N1L4 340 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 LRRC25Q8N386 305 aaPredicted RBP3.23□□□□□ -1.89
VPS29-202ENST00000447578 LINC00471Q8N535 108 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 MORN4Q8NDC4 146 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 SDR9C7Q8NEX9 313 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 OR52I1Q8NGK6 324 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 OR52P1PQ8NH57 321 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 OR10G6Q8NH81 332 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 CCL4L1Q8NHW4 92 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 PIGXQ8TBF5 258 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 NT5CQ8TCD5 201 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 SLC7A13Q8TCU3 470 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 DOK4Q8TEW6 326 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 OR1E3Q8WZA6 343 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 CDS1Q92903 461 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 FGF14Q92915 247 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 TOMM40LQ969M1 308 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 ZNF681Q96N22 645 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 TRNT1Q96Q11 434 aaKnown RBP3.23□□□□□ -1.89
VPS29-202ENST00000447578 MCHR1Q99705 422 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 GABRG3Q99928 467 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 MND1Q9BWT6 205 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 POLR2J2Q9GZM3 115 aaKnown RBP3.23□□□□□ -1.89
VPS29-202ENST00000447578 NXF2Q9GZY0 626 aaKnown RBP3.23□□□□□ -1.89
VPS29-202ENST00000447578 RACGAP1Q9H0H5 632 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 SRMSQ9H3Y6 488 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 RPS10P5Q9NQ39 176 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 NUDT15Q9NV35 164 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 LYARQ9NX58 379 aaKnown RBP3.23□□□□□ -1.89
VPS29-202ENST00000447578 GIN1Q9NXP7 522 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 CALML5Q9NZT1 146 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 CES1P1Q9UKY3 287 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 SSR3Q9UNL2 185 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 CFL2Q9Y281 166 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 PEX16Q9Y5Y5 336 aa3.23□□□□□ -1.89
VPS29-202ENST00000447578 A0A087WUU8 490 aa3.22□□□□□ -1.89
VPS29-202ENST00000447578 PNMA8CA0A1B0GUJ8 204 aa3.22□□□□□ -1.89
VPS29-202ENST00000447578 SMCO3A2RU48 225 aa3.22□□□□□ -1.89
VPS29-202ENST00000447578 OR6C74A6NCV1 312 aa3.22□□□□□ -1.89
VPS29-202ENST00000447578 ZNF860A6NHJ4 632 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms