RNA–Protein interactions for RNA: ENST00000414700.7

SHMT2-202, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 2,006 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-202ENST00000414700 ZNF83P51522 516 aa13.39□□□□□ -0.27
SHMT2-202ENST00000414700 RNASE12Q5GAN4 147 aaKnown RBP13.39□□□□□ -0.27
SHMT2-202ENST00000414700 BAIAP2L2Q6UXY1 529 aa13.39□□□□□ -0.27
SHMT2-202ENST00000414700 ZNF704Q6ZNC4 412 aaPredicted RBP13.39□□□□□ -0.27
SHMT2-202ENST00000414700 COLCA1Q6ZS62 124 aa13.39□□□□□ -0.27
SHMT2-202ENST00000414700 COMMD2Q86X83 199 aa13.39□□□□□ -0.27
SHMT2-202ENST00000414700 ASB5Q8WWX0 329 aa13.39□□□□□ -0.27
SHMT2-202ENST00000414700 SGK3Q96BR1 496 aa13.39□□□□□ -0.27
SHMT2-202ENST00000414700 MUCL1Q96DR8 90 aa13.39□□□□□ -0.27
SHMT2-202ENST00000414700 FAM71F1Q96KD3 344 aaPredicted RBP13.39□□□□□ -0.27
SHMT2-202ENST00000414700 CHIAQ9BZP6 476 aa13.39□□□□□ -0.27
SHMT2-202ENST00000414700 NPDC1Q9NQX5 325 aaPredicted RBP13.39□□□□□ -0.27
SHMT2-202ENST00000414700 MGAT4CQ9UBM8 478 aa13.39□□□□□ -0.27
SHMT2-202ENST00000414700 MRPS7Q9Y2R9 242 aaKnown RBP13.39□□□□□ -0.27
SHMT2-202ENST00000414700 LRBAP50851 2863 aa13.39□□□□□ -0.27
SHMT2-202ENST00000414700 DOPEY1Q5JWR5 2465 aa13.39□□□□□ -0.27
SHMT2-202ENST00000414700 TRBV5-5A0A0J9YX44 114 aa13.39□□□□□ -0.27
SHMT2-202ENST00000414700 MCRIP1C9JLW8 97 aa13.39□□□□□ -0.27
SHMT2-202ENST00000414700 PLATP00750 562 aa13.39□□□□□ -0.27
SHMT2-202ENST00000414700 IGLV3-1P01715 115 aa13.39□□□□□ -0.27
SHMT2-202ENST00000414700 THBDP07204 575 aa13.39□□□□□ -0.27
SHMT2-202ENST00000414700 NFYAP23511 347 aaPredicted RBP13.39□□□□□ -0.27
SHMT2-202ENST00000414700 RAP2BP61225 183 aa13.39□□□□□ -0.27
SHMT2-202ENST00000414700 SNTB2Q13425 540 aaKnown RBP13.39□□□□□ -0.27
SHMT2-202ENST00000414700 HLXQ14774 488 aaPredicted RBP13.39□□□□□ -0.27
SHMT2-202ENST00000414700 TRAM1Q15629 374 aa13.39□□□□□ -0.27
SHMT2-202ENST00000414700 TBC1D28Q2M2D7 210 aa13.39□□□□□ -0.27
SHMT2-202ENST00000414700 Q499Y3 187 aa13.39□□□□□ -0.27
SHMT2-202ENST00000414700 GLYATL3Q5SZD4 288 aa13.39□□□□□ -0.27
SHMT2-202ENST00000414700 ASPHD2Q6ICH7 369 aa13.39□□□□□ -0.27
SHMT2-202ENST00000414700 ATRAIDQ6UW56 229 aa13.39□□□□□ -0.27
SHMT2-202ENST00000414700 C17orf107Q6ZR85 190 aa13.39□□□□□ -0.27
SHMT2-202ENST00000414700 Q6ZTK2 550 aa13.39□□□□□ -0.27
SHMT2-202ENST00000414700 GPR148Q8TDV2 347 aa13.39□□□□□ -0.27
SHMT2-202ENST00000414700 TSEN15Q8WW01 171 aaKnown RBP13.39□□□□□ -0.27
SHMT2-202ENST00000414700 TMEM106AQ96A25 262 aa13.39□□□□□ -0.27
SHMT2-202ENST00000414700 POFUT1Q9H488 388 aa13.39□□□□□ -0.27
SHMT2-202ENST00000414700 BEX1Q9HBH7 125 aa13.39□□□□□ -0.27
SHMT2-202ENST00000414700 NOX4Q9NPH5 578 aa13.39□□□□□ -0.27
SHMT2-202ENST00000414700 PIPOXQ9P0Z9 390 aa13.39□□□□□ -0.27
SHMT2-202ENST00000414700 HHLA2Q9UM44 414 aa13.39□□□□□ -0.27
SHMT2-202ENST00000414700 A0A0G2JK05 382 aa13.38□□□□□ -0.27
SHMT2-202ENST00000414700 POM121CA8CG34 1229 aa13.38□□□□□ -0.27
SHMT2-202ENST00000414700 SYT7O43581 403 aa13.38□□□□□ -0.27
SHMT2-202ENST00000414700 ZNF92Q03936 586 aa13.38□□□□□ -0.27
SHMT2-202ENST00000414700 FBXL19-AS1Q494R0 122 aa13.38□□□□□ -0.27
SHMT2-202ENST00000414700 TMEM244Q5VVB8 128 aa13.38□□□□□ -0.27
SHMT2-202ENST00000414700 ALKAL2Q6UX46 152 aa13.38□□□□□ -0.27
SHMT2-202ENST00000414700 UNQ9370/PRO34162Q6UXP9 181 aa13.38□□□□□ -0.27
SHMT2-202ENST00000414700 ITLN2Q8WWU7 325 aaPredicted RBP13.38□□□□□ -0.27
SHMT2-202ENST00000414700 MRPS24Q96EL2 167 aaKnown RBP13.38□□□□□ -0.27
SHMT2-202ENST00000414700 WFIKKN1Q96NZ8 548 aa13.38□□□□□ -0.27
SHMT2-202ENST00000414700 DERL3Q96Q80 235 aa13.38□□□□□ -0.27
SHMT2-202ENST00000414700 C12orf57Q99622 126 aa13.38□□□□□ -0.27
SHMT2-202ENST00000414700 STARD10Q9Y365 291 aa13.38□□□□□ -0.27
SHMT2-202ENST00000414700 DCHS2Q6V1P9 2916 aa13.38□□□□□ -0.27
SHMT2-202ENST00000414700 ABCA4P78363 2273 aa13.37□□□□□ -0.27
SHMT2-202ENST00000414700 A0A0U1RQV5 110 aa13.37□□□□□ -0.27
SHMT2-202ENST00000414700 M0R1B8 84 aa13.37□□□□□ -0.27
SHMT2-202ENST00000414700 PPP3CBP16298 524 aa13.37□□□□□ -0.27
SHMT2-202ENST00000414700 ACHEP22303 614 aa13.37□□□□□ -0.27
SHMT2-202ENST00000414700 S100A11P31949 105 aa13.37□□□□□ -0.27
SHMT2-202ENST00000414700 OR10A3P58181 314 aa13.37□□□□□ -0.27
SHMT2-202ENST00000414700 TFF3Q07654 80 aa13.37□□□□□ -0.27
SHMT2-202ENST00000414700 PDZD9Q8IXQ8 264 aa13.37□□□□□ -0.27
SHMT2-202ENST00000414700 OR10A2Q9H208 303 aa13.37□□□□□ -0.27
SHMT2-202ENST00000414700 KCNK7Q9Y2U2 307 aa13.37□□□□□ -0.27
SHMT2-202ENST00000414700 LRRK2Q5S007 2527 aa13.37□□□□□ -0.27
SHMT2-202ENST00000414700 ANXA2P2A6NMY6 339 aa13.37□□□□□ -0.27
SHMT2-202ENST00000414700 PRSS44E7EML9 344 aa13.37□□□□□ -0.27
SHMT2-202ENST00000414700 SERPINA3P01011 423 aa13.37□□□□□ -0.27
SHMT2-202ENST00000414700 APOC3P02656 99 aa13.37□□□□□ -0.27
SHMT2-202ENST00000414700 UCHL1P09936 223 aa13.37□□□□□ -0.27
SHMT2-202ENST00000414700 ZNF35P13682 527 aa13.37□□□□□ -0.27
SHMT2-202ENST00000414700 ERVS71-1P61550 626 aa13.37□□□□□ -0.27
SHMT2-202ENST00000414700 GK2Q14410 553 aaPredicted RBP13.37□□□□□ -0.27
SHMT2-202ENST00000414700 DMRTC1Q5HYR2 192 aa13.37□□□□□ -0.27
SHMT2-202ENST00000414700 SPATA46Q5T0L3 261 aa13.37□□□□□ -0.27
SHMT2-202ENST00000414700 MTFR2Q6P444 385 aa13.37□□□□□ -0.27
SHMT2-202ENST00000414700 OR13C3Q8NGS6 347 aa13.37□□□□□ -0.27
SHMT2-202ENST00000414700 OR1S1Q8NH92 325 aa13.37□□□□□ -0.27
SHMT2-202ENST00000414700 RNASE6Q93091 150 aaKnown RBP13.37□□□□□ -0.27
SHMT2-202ENST00000414700 REEP6Q96HR9 211 aa13.37□□□□□ -0.27
SHMT2-202ENST00000414700 KCNJ16Q9NPI9 418 aa13.37□□□□□ -0.27
SHMT2-202ENST00000414700 NKIRAS2Q9NYR9 191 aa13.37□□□□□ -0.27
SHMT2-202ENST00000414700 GPR160Q9UJ42 338 aa13.37□□□□□ -0.27
SHMT2-202ENST00000414700 DHDHQ9UQ10 334 aa13.37□□□□□ -0.27
SHMT2-202ENST00000414700 HRNRQ86YZ3 2850 aaPredicted RBP13.37□□□□□ -0.27
SHMT2-202ENST00000414700 TRAV8-7A0A075B6U6 113 aa13.36□□□□□ -0.27
SHMT2-202ENST00000414700 CTDSPLO15194 276 aa13.36□□□□□ -0.27
SHMT2-202ENST00000414700 CCL1P22362 96 aa13.36□□□□□ -0.27
SHMT2-202ENST00000414700 ACKR3P25106 362 aa13.36□□□□□ -0.27
SHMT2-202ENST00000414700 SPOCK1Q08629 439 aa13.36□□□□□ -0.27
SHMT2-202ENST00000414700 WFDC8Q8IUA0 241 aa13.36□□□□□ -0.27
SHMT2-202ENST00000414700 OR1J2Q8NGS2 313 aa13.36□□□□□ -0.27
SHMT2-202ENST00000414700 APOBEC3DQ96AK3 386 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-202ENST00000414700 ADAT3Q96EY9 351 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-202ENST00000414700 ZCCHC4Q9H5U6 513 aa13.36□□□□□ -0.27
SHMT2-202ENST00000414700 CDH20Q9HBT6 801 aa13.36□□□□□ -0.27
SHMT2-202ENST00000414700 NDRG3Q9UGV2 375 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms