RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 JUNBP17275 347 aaPredicted RBP12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 CEBPBP17676 345 aa12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 SPPL3Q8TCT6 385 aa12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 IL36GQ9NZH8 169 aa12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 MDH2P40926 338 aaKnown RBP12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 PAQR6Q6TCH4 344 aa12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 UBALD2Q8IYN6 164 aa12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 ADAMTS17Q8TE56 1095 aa12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 NUDT16L1Q9BRJ7 211 aaKnown RBP12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 ACER3Q9NUN7 267 aa12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 LNP1A1A4G5 178 aa12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 CLEC2LP0C7M8 214 aa12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 CST5P28325 142 aaPredicted RBP12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 PCP4P48539 62 aa12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 RRN3P1Q2M238 152 aa12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 SPATA45Q537H7 98 aa12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 DERL3Q96Q80 235 aa12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 ADAM20O43506 726 aa12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 ZNF26P17031 533 aaPredicted RBP12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 PSMB5P28074 263 aa12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 BRS3P32247 399 aa12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 RAB9AP51151 201 aa12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 HERPUD1Q15011 391 aa12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 ANKRD55Q3KP44 614 aa12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 RHBDD2Q6NTF9 364 aa12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 WFDC8Q8IUA0 241 aa12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 NUDCD2Q8WVJ2 157 aa12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 AUP1Q9Y679 476 aa12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 FAM221AA4D161 298 aa12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 LEMD1Q68G75 181 aa12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 SIGIRRQ6IA17 410 aa12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 PARM1Q6UWI2 310 aa12.04□□□□□ -0.48
CCDC88A-204ENST00000413716 FAM157BP0CG42 384 aa12.03□□□□□ -0.48
CCDC88A-204ENST00000413716 ORM2P19652 201 aa12.03□□□□□ -0.48
CCDC88A-204ENST00000413716 SHBQ15464 509 aa12.03□□□□□ -0.48
CCDC88A-204ENST00000413716 OR2W3Q7Z3T1 314 aa12.03□□□□□ -0.48
CCDC88A-204ENST00000413716 DPH3Q96FX2 82 aa12.03□□□□□ -0.48
CCDC88A-204ENST00000413716 POMT2Q9UKY4 750 aa12.03□□□□□ -0.48
CCDC88A-204ENST00000413716 LOC389332A0A1B0GUA5 103 aa12.03□□□□□ -0.48
CCDC88A-204ENST00000413716 SOX15O60248 233 aa12.03□□□□□ -0.48
CCDC88A-204ENST00000413716 IGHA1P01876 353 aa12.03□□□□□ -0.48
CCDC88A-204ENST00000413716 IGHA2P01877 340 aa12.03□□□□□ -0.48
CCDC88A-204ENST00000413716 TIMP4Q99727 224 aa12.03□□□□□ -0.48
CCDC88A-204ENST00000413716 ZNF407Q9C0G0 2248 aa12.03□□□□□ -0.48
CCDC88A-204ENST00000413716 FBXL6Q8N531 539 aa12.03□□□□□ -0.48
CCDC88A-204ENST00000413716 RPEQ96AT9 228 aa12.03□□□□□ -0.48
CCDC88A-204ENST00000413716 AQP10Q96PS8 301 aa12.03□□□□□ -0.48
CCDC88A-204ENST00000413716 CDX2Q99626 313 aaPredicted RBP12.03□□□□□ -0.48
CCDC88A-204ENST00000413716 NEURL2Q9BR09 285 aa12.03□□□□□ -0.48
CCDC88A-204ENST00000413716 VCX2Q9H322 139 aa12.03□□□□□ -0.48
CCDC88A-204ENST00000413716 OR4C45A6NMZ5 311 aa12.03□□□□□ -0.48
CCDC88A-204ENST00000413716 LANCL1O43813 399 aa12.03□□□□□ -0.48
CCDC88A-204ENST00000413716 LILRA2Q8N149 483 aa12.03□□□□□ -0.48
CCDC88A-204ENST00000413716 TMEM229BQ8NBD8 167 aa12.03□□□□□ -0.48
CCDC88A-204ENST00000413716 PTX4Q96A99 478 aa12.03□□□□□ -0.48
CCDC88A-204ENST00000413716 TAAR3PQ9P1P4 343 aa12.03□□□□□ -0.48
CCDC88A-204ENST00000413716 RICTORQ6R327 1708 aa12.03□□□□□ -0.48
CCDC88A-204ENST00000413716 SLCO2B1O94956 709 aa12.03□□□□□ -0.48
CCDC88A-204ENST00000413716 PRRX1P54821 245 aa12.03□□□□□ -0.48
CCDC88A-204ENST00000413716 CRYAAP02489 173 aa12.03□□□□□ -0.48
CCDC88A-204ENST00000413716 FUT6P51993 359 aa12.03□□□□□ -0.48
CCDC88A-204ENST00000413716 CCL14Q16627 93 aa12.03□□□□□ -0.48
CCDC88A-204ENST00000413716 NUFIP2Q7Z417 695 aaKnown RBP12.03□□□□□ -0.48
CCDC88A-204ENST00000413716 BCDIN3DQ7Z5W3 292 aaKnown RBP12.03□□□□□ -0.48
CCDC88A-204ENST00000413716 TMEM101Q96IK0 257 aa12.03□□□□□ -0.48
CCDC88A-204ENST00000413716 SLAMF8Q9P0V8 285 aa12.03□□□□□ -0.48
CCDC88A-204ENST00000413716 PXDNQ92626 1479 aa12.03□□□□□ -0.48
CCDC88A-204ENST00000413716 RBFOX2O43251 390 aaKnown RBP eCLIP12.03□□□□□ -0.482e-7■■■■■ 40.6
CCDC88A-204ENST00000413716 NPBWR2P48146 333 aa12.03□□□□□ -0.48
CCDC88A-204ENST00000413716 FPR2P25090 351 aa12.03□□□□□ -0.48
CCDC88A-204ENST00000413716 ZNF346Q9UL40 294 aaKnown RBP12.03□□□□□ -0.48
CCDC88A-204ENST00000413716 PPP1R17O96001 155 aa12.02□□□□□ -0.48
CCDC88A-204ENST00000413716 KLF3P57682 345 aaPredicted RBP12.02□□□□□ -0.48
CCDC88A-204ENST00000413716 RNF165Q6ZSG1 346 aa12.02□□□□□ -0.48
CCDC88A-204ENST00000413716 ROBO4Q8WZ75 1007 aa12.02□□□□□ -0.48
CCDC88A-204ENST00000413716 FOXJ3Q9UPW0 622 aa12.02□□□□□ -0.48
CCDC88A-204ENST00000413716 SMCHD1A6NHR9 2005 aa12.02□□□□□ -0.48
CCDC88A-204ENST00000413716 MBPP02686 304 aaPredicted RBP12.02□□□□□ -0.48
CCDC88A-204ENST00000413716 FLYWCH2Q96CP2 140 aaKnown RBP12.02□□□□□ -0.48
CCDC88A-204ENST00000413716 CDCA3Q99618 268 aaPredicted RBP12.02□□□□□ -0.48
CCDC88A-204ENST00000413716 PBOV1Q9GZY1 135 aa12.02□□□□□ -0.48
CCDC88A-204ENST00000413716 ANKRD10Q9NXR5 420 aa12.02□□□□□ -0.48
CCDC88A-204ENST00000413716 FBXL17Q9UF56 701 aa12.02□□□□□ -0.48
CCDC88A-204ENST00000413716 POLEQ07864 2286 aa12.02□□□□□ -0.48
CCDC88A-204ENST00000413716 CEACAM6P40199 344 aa12.02□□□□□ -0.48
CCDC88A-204ENST00000413716 DEFB108BQ8NET1 73 aa12.02□□□□□ -0.48
CCDC88A-204ENST00000413716 SIRT7Q9NRC8 400 aa12.02□□□□□ -0.48
CCDC88A-204ENST00000413716 LGALS3P17931 250 aaKnown RBP12.02□□□□□ -0.49
CCDC88A-204ENST00000413716 PRDX1Q06830 199 aaKnown RBP12.02□□□□□ -0.49
CCDC88A-204ENST00000413716 LRRTM3Q86VH5 581 aa12.02□□□□□ -0.49
CCDC88A-204ENST00000413716 OR10G4Q8NGN3 311 aa12.02□□□□□ -0.49
CCDC88A-204ENST00000413716 OR10G9Q8NGN4 311 aa12.02□□□□□ -0.49
CCDC88A-204ENST00000413716 OR10G7Q8NGN6 311 aa12.02□□□□□ -0.49
CCDC88A-204ENST00000413716 HLA-GP17693 338 aa12.02□□□□□ -0.49
CCDC88A-204ENST00000413716 THBS4P35443 961 aa12.02□□□□□ -0.49
CCDC88A-204ENST00000413716 NIPSNAP1Q9BPW8 284 aa12.02□□□□□ -0.49
CCDC88A-204ENST00000413716 TECRQ9NZ01 308 aaKnown RBP12.02□□□□□ -0.49
CCDC88A-204ENST00000413716 WRAP73Q9P2S5 460 aaPredicted RBP12.02□□□□□ -0.49
CCDC88A-204ENST00000413716 TUBGCP6Q96RT7 1819 aa12.02□□□□□ -0.49
CCDC88A-204ENST00000413716 MASP2O00187 686 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms