RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 CAB39Q9Y376 341 aaPredicted RBP5.34□□□□□ -1.55
USP40-202ENST00000409945 CELSR1Q9NYQ6 3014 aa5.34□□□□□ -1.55
USP40-202ENST00000409945 IGHV2OR16-5A0A0B4J2B6 119 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 H7C417 338 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 TNFRSF11BO00300 401 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 ZNF254O75437 659 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 RENP00797 406 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 SEMG1P04279 462 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 OR4A8P0C604 315 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 TSPAN19P0C672 248 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 DAOP14920 347 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 CRABP1P29762 137 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 ETV1P50549 477 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 CTAG1AP78358 180 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 SCRN3Q0VDG4 424 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 PHYHD1Q5SRE7 291 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 SMARCD3Q6STE5 483 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 DPY19L2P2Q6ZN68 376 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 GPR141Q7Z602 305 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 LRRC18Q8N456 261 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 SLC30A7Q8NEW0 376 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 OR13C2Q8NGS9 318 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 FANK1Q8TC84 345 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 GNPDA2Q8TDQ7 276 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 SSMEM1Q8WWF3 244 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 C11orf40Q8WZ69 217 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 NSMAFQ92636 917 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 LYZL4Q96KX0 146 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 C7orf34Q96L11 122 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 MRPL13Q9BYD1 178 aaKnown RBP5.33□□□□□ -1.56
USP40-202ENST00000409945 REEP1Q9H902 201 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 RAB9BQ9NP90 201 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 MAN2C1Q9NTJ4 1040 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 FAM118AQ9NWS6 357 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 TAS2R3Q9NYW6 316 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 RSL24D1Q9UHA3 163 aaKnown RBP5.33□□□□□ -1.56
USP40-202ENST00000409945 POLR1DQ9Y2S0 133 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 KCNK7Q9Y2U2 307 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 PRRC2AP48634 2157 aaKnown RBP5.33□□□□□ -1.56
USP40-202ENST00000409945 A0A1W2PPW3 197 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 E9PI62 339 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 NDUFS8O00217 210 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 IMPA2O14732 288 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 FFAR1O14842 300 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 IDH3BO43837 385 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 XPNPEP2O43895 674 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 KHDRBS3O75525 346 aaKnown RBP5.33□□□□□ -1.56
USP40-202ENST00000409945 DIRAS1O95057 198 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 IGHV2-70P01814 119 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 CST2P09228 141 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 SLC25A16P16260 332 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 GSTM3P21266 225 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 MSR1P21757 451 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 CCNOP22674 350 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 IGFBP5P24593 272 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 GLRXP35754 106 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 EVX1P49640 407 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 PPOXP50336 477 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 GDI2P50395 445 aaKnown RBP5.33□□□□□ -1.56
USP40-202ENST00000409945 EFNA4P52798 201 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 GABARAPL2P60520 117 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 ERVK-25P63136 954 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 KRR1Q13601 381 aaKnown RBP5.33□□□□□ -1.56
USP40-202ENST00000409945 HIST3H3Q16695 136 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 ZNF773Q6PK81 442 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 SKA3Q8IX90 412 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 MUC20Q8N307 709 aaPredicted RBP5.33□□□□□ -1.56
USP40-202ENST00000409945 LINC00469Q8N7U9 141 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 SLC24A4Q8NFF2 622 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 ZNF420Q8TAQ5 688 aaPredicted RBP5.33□□□□□ -1.56
USP40-202ENST00000409945 SH3GL3Q99963 347 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 RERGLQ9H628 205 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 ZNF556Q9HAH1 456 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 ELOVL3Q9HB03 270 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 NOX3Q9HBY0 568 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 B3GNT2Q9NY97 397 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 SLCO1C1Q9NYB5 712 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 PCDHGB1Q9Y5G3 927 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 TIMM10BQ9Y5J6 103 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 HSPE1-MOB4S4R3N1 261 aa5.33□□□□□ -1.56
USP40-202ENST00000409945 CADP27708 2225 aa5.32□□□□□ -1.56
USP40-202ENST00000409945 MED13LQ71F56 2210 aa5.32□□□□□ -1.56
USP40-202ENST00000409945 HIVEP1P15822 2718 aa5.32□□□□□ -1.56
USP40-202ENST00000409945 RAI1Q7Z5J4 1906 aaPredicted RBP5.32□□□□□ -1.56
USP40-202ENST00000409945 TRBV4-1A0A0J9YWV2 114 aa5.32□□□□□ -1.56
USP40-202ENST00000409945 LOC100130705A0A1B0GUX0 176 aa5.32□□□□□ -1.56
USP40-202ENST00000409945 PRSS37A4D1T9 235 aa5.32□□□□□ -1.56
USP40-202ENST00000409945 M0R233 179 aa5.32□□□□□ -1.56
USP40-202ENST00000409945 DVL1O14640 695 aa5.32□□□□□ -1.56
USP40-202ENST00000409945 CCNB2O95067 398 aa5.32□□□□□ -1.56
USP40-202ENST00000409945 SLC2A10O95528 541 aa5.32□□□□□ -1.56
USP40-202ENST00000409945 CLIC3O95833 236 aa5.32□□□□□ -1.56
USP40-202ENST00000409945 ZNF14P17017 642 aaPredicted RBP5.32□□□□□ -1.56
USP40-202ENST00000409945 TUBG1P23258 451 aa5.32□□□□□ -1.56
USP40-202ENST00000409945 ZNF133P52736 654 aaPredicted RBP5.32□□□□□ -1.56
USP40-202ENST00000409945 TSPAN31Q12999 210 aa5.32□□□□□ -1.56
USP40-202ENST00000409945 CARTPTQ16568 116 aa5.32□□□□□ -1.56
USP40-202ENST00000409945 FAM27BQ5VT28 67 aa5.32□□□□□ -1.56
USP40-202ENST00000409945 ZNF691Q5VV52 312 aa5.32□□□□□ -1.56
USP40-202ENST00000409945 METTL11BQ5VVY1 283 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms