RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 PALMDQ9NP74 551 aa3.17□□□□□ -1.9
RTN4-208ENST00000404909 RALYQ9UKM9 306 aaKnown RBP3.17□□□□□ -1.9
RTN4-208ENST00000404909 ELF5Q9UKW6 265 aaPredicted RBP3.17□□□□□ -1.9
RTN4-208ENST00000404909 UTP20O75691 2785 aaKnown RBP3.17□□□□□ -1.9
RTN4-208ENST00000404909 IGKV1-12A0A0C4DH73 117 aa3.17□□□□□ -1.9
RTN4-208ENST00000404909 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP3.17□□□□□ -1.9
RTN4-208ENST00000404909 MEIOCA2RUB1 952 aa3.17□□□□□ -1.9
RTN4-208ENST00000404909 A6NLC8 198 aa3.17□□□□□ -1.9
RTN4-208ENST00000404909 TMEM14DPA8MWL7 114 aa3.17□□□□□ -1.9
RTN4-208ENST00000404909 CDIPTO14735 213 aa3.17□□□□□ -1.9
RTN4-208ENST00000404909 LDLRAD4O15165 306 aa3.17□□□□□ -1.9
RTN4-208ENST00000404909 LANCL1O43813 399 aa3.17□□□□□ -1.9
RTN4-208ENST00000404909 CYB5AP00167 134 aa3.17□□□□□ -1.9
RTN4-208ENST00000404909 IGKV1D-12P01611 117 aa3.17□□□□□ -1.9
RTN4-208ENST00000404909 HLA-DQB1P01920 261 aa3.17□□□□□ -1.9
RTN4-208ENST00000404909 SFTPBP07988 381 aa3.17□□□□□ -1.9
RTN4-208ENST00000404909 UBBP0CG47 229 aa3.17□□□□□ -1.9
RTN4-208ENST00000404909 NAT2P11245 290 aa3.17□□□□□ -1.9
RTN4-208ENST00000404909 GTF2F2P13984 249 aa3.17□□□□□ -1.9
RTN4-208ENST00000404909 GNB3P16520 340 aa3.17□□□□□ -1.9
RTN4-208ENST00000404909 RBMXP38159 391 aaKnown RBP3.17□□□□□ -1.9
RTN4-208ENST00000404909 NPBWR2P48146 333 aa3.17□□□□□ -1.9
RTN4-208ENST00000404909 PTH2RP49190 550 aa3.17□□□□□ -1.9
RTN4-208ENST00000404909 SRP9P49458 86 aaKnown RBP3.17□□□□□ -1.9
RTN4-208ENST00000404909 RPS23P62266 143 aaKnown RBP3.17□□□□□ -1.9
RTN4-208ENST00000404909 GNG3P63215 75 aa3.17□□□□□ -1.9
RTN4-208ENST00000404909 NKX6-1P78426 367 aaPredicted RBP3.17□□□□□ -1.9
RTN4-208ENST00000404909 QRFPP83859 136 aa3.17□□□□□ -1.9
RTN4-208ENST00000404909 SCN1BQ07699 218 aa3.17□□□□□ -1.9
RTN4-208ENST00000404909 TAF9Q16594 264 aa3.17□□□□□ -1.9
RTN4-208ENST00000404909 NKPD1Q17RQ9 610 aa3.17□□□□□ -1.9
RTN4-208ENST00000404909 C3orf36Q3SXR2 165 aa3.17□□□□□ -1.9
RTN4-208ENST00000404909 NKAPLQ5M9Q1 402 aa3.17□□□□□ -1.9
RTN4-208ENST00000404909 MBNL2Q5VZF2 373 aaKnown RBP3.17□□□□□ -1.9
RTN4-208ENST00000404909 OR2Z1Q8NG97 314 aa3.17□□□□□ -1.9
RTN4-208ENST00000404909 GTF3AQ92664 365 aaKnown RBP3.17□□□□□ -1.9
RTN4-208ENST00000404909 ZNF488Q96MN9 340 aa3.17□□□□□ -1.9
RTN4-208ENST00000404909 URM1Q9BTM9 101 aaKnown RBP3.17□□□□□ -1.9
RTN4-208ENST00000404909 RTL8AQ9BWD3 113 aa3.17□□□□□ -1.9
RTN4-208ENST00000404909 UFSP2Q9NUQ7 469 aa3.17□□□□□ -1.9
RTN4-208ENST00000404909 NKIRAS2Q9NYR9 191 aa3.17□□□□□ -1.9
RTN4-208ENST00000404909 USF3Q68DE3 2245 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 DCHS2Q6V1P9 2916 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP3.16□□□□□ -1.9
RTN4-208ENST00000404909 TMEM235A6NFC5 223 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 OR5B21A6NL26 309 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 SOCS1O15524 211 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 MLNRO43193 412 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 SPRY3O43610 288 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 SYNGR1O43759 233 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 RHBDL1O75783 438 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 CLDN14O95500 239 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 RAB6AP20340 208 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 BCL3P20749 454 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 TUBG1P23258 451 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 ALDH3B1P43353 468 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 NR4A2P43354 598 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 DEFA1P59665 94 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 DEFA3P59666 94 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 GUCA2AQ02747 115 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 PIGYQ3MUY2 71 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 FBXL19-AS1Q494R0 122 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 BAIAP2L2Q6UXY1 529 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 Q6ZR03 302 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 DCDC5Q6ZRR9 648 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 OR2W3Q7Z3T1 314 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 RTN4RL2Q86UN3 420 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 ZNF573Q86YE8 665 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 C1orf174Q8IYL3 243 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 FBXL14Q8N1E6 418 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 ZNF843Q8N446 348 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 OR13G1Q8NGZ3 307 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 OR52I2Q8NH67 350 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 FCAMRQ8WWV6 532 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 NEUROG1Q92886 237 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 MRPL37Q9BZE1 423 aaKnown RBP3.16□□□□□ -1.9
RTN4-208ENST00000404909 LPAR5Q9H1C0 372 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 OCEL1Q9H607 264 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 TUBG2Q9NRH3 451 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 RBFOX1Q9NWB1 397 aaKnown RBP3.16□□□□□ -1.9
RTN4-208ENST00000404909 TAAR3PQ9P1P4 343 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 GHRLQ9UBU3 117 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 KLK11Q9UBX7 282 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 TACC2O95359 2948 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 hCG_2014768A0A024R1R8 64 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 A0A0A6YYD4 124 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 hCG_1807616A0A1W2PRN6 198 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 F8VVB4 439 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 F8VWA3 439 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 TRAPPC2LH3BP13 241 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 RAB27BO00194 218 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 GEMIN2O14893 280 aaKnown RBP3.16□□□□□ -1.9
RTN4-208ENST00000404909 AKR7A2O43488 359 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 ZNF780AO75290 641 aaPredicted RBP3.16□□□□□ -1.9
RTN4-208ENST00000404909 CD3EP07766 207 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 OR4A8P0C604 315 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 ZNF250P15622 560 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 KITLGP21583 273 aa3.16□□□□□ -1.9
RTN4-208ENST00000404909 PTBP1P26599 531 aaKnown RBP eCLIP3.16□□□□□ -1.91e-7■■■■□ 26.1
RTN4-208ENST00000404909 DUSP1P28562 367 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms