RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 VSIG8P0DPA2 414 aa9.36□□□□□ -0.91
RTN3-204ENST00000354497 TNFSF4P23510 183 aa9.36□□□□□ -0.91
RTN3-204ENST00000354497 GADD45AP24522 165 aa9.36□□□□□ -0.91
RTN3-204ENST00000354497 STOMP27105 288 aa9.36□□□□□ -0.91
RTN3-204ENST00000354497 HTR2AP28223 471 aa9.36□□□□□ -0.91
RTN3-204ENST00000354497 CRABP1P29762 137 aa9.36□□□□□ -0.91
RTN3-204ENST00000354497 RPS19P39019 145 aaKnown RBP9.36□□□□□ -0.91
RTN3-204ENST00000354497 WNT5AP41221 380 aa9.36□□□□□ -0.91
RTN3-204ENST00000354497 RORCP51449 518 aa9.36□□□□□ -0.91
RTN3-204ENST00000354497 ZNF84P51523 738 aa9.36□□□□□ -0.91
RTN3-204ENST00000354497 PCBP3P57721 371 aaKnown RBP9.36□□□□□ -0.91
RTN3-204ENST00000354497 UFM1P61960 85 aa9.36□□□□□ -0.91
RTN3-204ENST00000354497 SMCO1Q147U7 214 aa9.36□□□□□ -0.91
RTN3-204ENST00000354497 AGKQ53H12 422 aa9.36□□□□□ -0.91
RTN3-204ENST00000354497 OR2B11Q5JQS5 317 aa9.36□□□□□ -0.91
RTN3-204ENST00000354497 Q6YL49 198 aa9.36□□□□□ -0.91
RTN3-204ENST00000354497 ZNF620Q6ZNG0 422 aa9.36□□□□□ -0.91
RTN3-204ENST00000354497 SLC35D2Q76EJ3 337 aa9.36□□□□□ -0.91
RTN3-204ENST00000354497 PXKQ7Z7A4 578 aa9.36□□□□□ -0.91
RTN3-204ENST00000354497 LRRC28Q86X40 367 aaPredicted RBP9.36□□□□□ -0.91
RTN3-204ENST00000354497 C1orf174Q8IYL3 243 aa9.36□□□□□ -0.91
RTN3-204ENST00000354497 PRR18Q8N4B5 295 aa9.36□□□□□ -0.91
RTN3-204ENST00000354497 LINC01006Q8NI28 216 aa9.36□□□□□ -0.91
RTN3-204ENST00000354497 ABHD4Q8TB40 342 aa9.36□□□□□ -0.91
RTN3-204ENST00000354497 KLF14Q8TD94 323 aaPredicted RBP9.36□□□□□ -0.91
RTN3-204ENST00000354497 ORAI1Q96D31 301 aa9.36□□□□□ -0.91
RTN3-204ENST00000354497 MARS2Q96GW9 593 aaKnown RBP9.36□□□□□ -0.91
RTN3-204ENST00000354497 TEX37Q96LM6 180 aa9.36□□□□□ -0.91
RTN3-204ENST00000354497 SSX3Q99909 188 aa9.36□□□□□ -0.91
RTN3-204ENST00000354497 DPCDQ9BVM2 203 aaPredicted RBP9.36□□□□□ -0.91
RTN3-204ENST00000354497 GORASP2Q9H8Y8 452 aa9.36□□□□□ -0.91
RTN3-204ENST00000354497 NOX4Q9NPH5 578 aa9.36□□□□□ -0.91
RTN3-204ENST00000354497 VSX1Q9NZR4 365 aaPredicted RBP9.36□□□□□ -0.91
RTN3-204ENST00000354497 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.36□□□□□ -0.91
RTN3-204ENST00000354497 CDH10Q9Y6N8 788 aa9.36□□□□□ -0.91
RTN3-204ENST00000354497 MEIKINA0A087WXM9 373 aa9.35□□□□□ -0.91
RTN3-204ENST00000354497 RFPL4AA6NLU0 287 aa9.35□□□□□ -0.91
RTN3-204ENST00000354497 RFPL4AL1F8VTS6 287 aa9.35□□□□□ -0.91
RTN3-204ENST00000354497 INMT-MINDY4F8WBC2 141 aa9.35□□□□□ -0.91
RTN3-204ENST00000354497 BLOC1S5-TXNDC5H3BN57 136 aa9.35□□□□□ -0.91
RTN3-204ENST00000354497 RFXANKO14593 260 aa9.35□□□□□ -0.91
RTN3-204ENST00000354497 RNF13O43567 381 aa9.35□□□□□ -0.91
RTN3-204ENST00000354497 ZNF205O95201 554 aa9.35□□□□□ -0.91
RTN3-204ENST00000354497 CD55P08174 381 aa9.35□□□□□ -0.91
RTN3-204ENST00000354497 PPIAL4GP0DN37 164 aa9.35□□□□□ -0.91
RTN3-204ENST00000354497 LBPP18428 481 aa9.35□□□□□ -0.91
RTN3-204ENST00000354497 MAPK3P27361 379 aaPredicted RBP9.35□□□□□ -0.91
RTN3-204ENST00000354497 MDH2P40926 338 aaKnown RBP9.35□□□□□ -0.91
RTN3-204ENST00000354497 MAP2K4P45985 399 aa9.35□□□□□ -0.91
RTN3-204ENST00000354497 GSK3BP49841 420 aa9.35□□□□□ -0.91
RTN3-204ENST00000354497 CLRN1P58418 232 aa9.35□□□□□ -0.91
RTN3-204ENST00000354497 RAB5BP61020 215 aa9.35□□□□□ -0.91
RTN3-204ENST00000354497 OXLD1Q5BKU9 147 aa9.35□□□□□ -0.91
RTN3-204ENST00000354497 ULK3Q6PHR2 472 aa9.35□□□□□ -0.91
RTN3-204ENST00000354497 UNQ6126/PRO20091Q6UXV3 157 aa9.35□□□□□ -0.91
RTN3-204ENST00000354497 TMEM17Q86X19 198 aa9.35□□□□□ -0.91
RTN3-204ENST00000354497 MUC20Q8N307 709 aaPredicted RBP9.35□□□□□ -0.91
RTN3-204ENST00000354497 PLPP7Q8NBV4 271 aa9.35□□□□□ -0.91
RTN3-204ENST00000354497 SLC24A4Q8NFF2 622 aa9.35□□□□□ -0.91
RTN3-204ENST00000354497 OR2Z1Q8NG97 314 aa9.35□□□□□ -0.91
RTN3-204ENST00000354497 OR5J2Q8NH18 312 aa9.35□□□□□ -0.91
RTN3-204ENST00000354497 RAB40AQ8WXH6 277 aa9.35□□□□□ -0.91
RTN3-204ENST00000354497 RSPO3Q9BXY4 272 aaPredicted RBP9.35□□□□□ -0.91
RTN3-204ENST00000354497 MED28Q9H204 178 aa9.35□□□□□ -0.91
RTN3-204ENST00000354497 TMPRSS5Q9H3S3 457 aa9.35□□□□□ -0.91
RTN3-204ENST00000354497 CGGBP1Q9UFW8 167 aaPredicted RBP9.35□□□□□ -0.91
RTN3-204ENST00000354497 C5orf58C9J3I9 102 aa9.34□□□□□ -0.91
RTN3-204ENST00000354497 PRKYO43930 277 aa9.34□□□□□ -0.91
RTN3-204ENST00000354497 GPR137BO60478 399 aa9.34□□□□□ -0.91
RTN3-204ENST00000354497 ANXA8P13928 327 aa9.34□□□□□ -0.91
RTN3-204ENST00000354497 TNFRSF1AP19438 455 aa9.34□□□□□ -0.91
RTN3-204ENST00000354497 RAB3BP20337 219 aa9.34□□□□□ -0.91
RTN3-204ENST00000354497 KIR3DL2P43630 455 aa9.34□□□□□ -0.91
RTN3-204ENST00000354497 RBP2P50120 134 aa9.34□□□□□ -0.91
RTN3-204ENST00000354497 PROK1P58294 105 aa9.34□□□□□ -0.91
RTN3-204ENST00000354497 FGF12P61328 243 aa9.34□□□□□ -0.91
RTN3-204ENST00000354497 PPP1CBP62140 327 aa9.34□□□□□ -0.91
RTN3-204ENST00000354497 GAGE1Q13065 139 aa9.34□□□□□ -0.91
RTN3-204ENST00000354497 ZIK1Q3SY52 487 aaPredicted RBP9.34□□□□□ -0.91
RTN3-204ENST00000354497 KLHL22Q53GT1 634 aa9.34□□□□□ -0.91
RTN3-204ENST00000354497 MBNL2Q5VZF2 373 aaKnown RBP9.34□□□□□ -0.91
RTN3-204ENST00000354497 NHLRC1Q6VVB1 395 aa9.34□□□□□ -0.91
RTN3-204ENST00000354497 KLBQ86Z14 1044 aa9.34□□□□□ -0.91
RTN3-204ENST00000354497 TMEM86BQ8N661 226 aa9.34□□□□□ -0.91
RTN3-204ENST00000354497 ZNF283Q8N7M2 679 aa9.34□□□□□ -0.91
RTN3-204ENST00000354497 AKR7LQ8NHP1 331 aa9.34□□□□□ -0.91
RTN3-204ENST00000354497 ITLN1Q8WWA0 313 aa9.34□□□□□ -0.91
RTN3-204ENST00000354497 MRPS24Q96EL2 167 aaKnown RBP9.34□□□□□ -0.91
RTN3-204ENST00000354497 FAM71F1Q96KD3 344 aaPredicted RBP9.34□□□□□ -0.91
RTN3-204ENST00000354497 PFDN5Q99471 154 aa9.34□□□□□ -0.91
RTN3-204ENST00000354497 NUDT16L1Q9BRJ7 211 aaKnown RBP9.34□□□□□ -0.91
RTN3-204ENST00000354497 PCGF1Q9BSM1 259 aa9.34□□□□□ -0.91
RTN3-204ENST00000354497 SLC25A32Q9H2D1 315 aa9.34□□□□□ -0.91
RTN3-204ENST00000354497 TMEM27Q9HBJ8 222 aa9.34□□□□□ -0.91
RTN3-204ENST00000354497 PPP1R3CQ9UQK1 317 aa9.34□□□□□ -0.91
RTN3-204ENST00000354497 TANC2Q9HCD6 1990 aa9.33□□□□□ -0.92
RTN3-204ENST00000354497 WNK1Q9H4A3 2382 aa9.33□□□□□ -0.92
RTN3-204ENST00000354497 MARCH11A6NNE9 402 aa9.33□□□□□ -0.92
RTN3-204ENST00000354497 H0YL77 283 aa9.33□□□□□ -0.92
RTN3-204ENST00000354497 CIDEAO60543 219 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms