RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 MIOXQ9UGB7 285 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 TET1Q8NFU7 2136 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 TMEM88BA6NKF7 163 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 C9JVG2 144 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 H7C1C5 153 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 SLC16A7O60669 478 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 CD82P27701 267 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 LMAN2Q12907 356 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 NCR3LG1Q68D85 454 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 TMEM178AQ8NBL3 297 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 OR52N5Q8NH56 324 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 NIPSNAP1Q9BPW8 284 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 ATG101Q9BSB4 218 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 CRB3Q9BUF7 120 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 CDCP1Q9H5V8 836 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 LILRA5A6NI73 299 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 OR7C2O60412 319 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 MRPL33O75394 65 aaKnown RBP4.73□□□□□ -1.65
SCN1A-201ENST00000303395 GDF5P43026 501 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 UCP3P55916 312 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 RPS20P60866 119 aaKnown RBP4.73□□□□□ -1.65
SCN1A-201ENST00000303395 RPL24P83731 157 aaKnown RBP4.73□□□□□ -1.65
SCN1A-201ENST00000303395 ZNF468Q5VIY5 522 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-201ENST00000303395 METRNLQ641Q3 311 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 OR10J5Q8NHC4 309 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 GPR119Q8TDV5 335 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 PCNPQ8WW12 178 aaKnown RBP4.73□□□□□ -1.65
SCN1A-201ENST00000303395 RAB8BQ92930 207 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 EXTL1Q92935 676 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 MOB3AQ96BX8 217 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 RCL1Q9Y2P8 373 aaKnown RBP4.73□□□□□ -1.65
SCN1A-201ENST00000303395 HES2Q9Y543 173 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 STRCP1A6NGW2 1772 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 SMCHD1A6NHR9 2005 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 A0A0B4J293 547 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 A0A1B0GU03 582 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 A0A1B0GWA3 101 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 PRAMEF25A6NGN4 478 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 MMP23AO75900 390 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 PPP1R3DO95685 299 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 HLA-DQA1P01909 254 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 CD22P20273 847 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 DRD1P21728 446 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 KRTDAPP60985 99 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 LSM6P62312 80 aaKnown RBP4.73□□□□□ -1.65
SCN1A-201ENST00000303395 C1orf100Q5SVJ3 147 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 LHX8Q68G74 356 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 MRPL54Q6P161 138 aaKnown RBP4.73□□□□□ -1.65
SCN1A-201ENST00000303395 H1FNTQ75WM6 255 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-201ENST00000303395 LPPQ93052 612 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 TM4SF18Q96CE8 201 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 NPAS1Q99742 590 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 TGIF2Q9GZN2 237 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 CHST8Q9H2A9 424 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 WDR81Q562E7 1941 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 SIRPB1O00241 398 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 PRRG2O14669 202 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 CFDP00746 253 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-201ENST00000303395 NRASP01111 189 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 HRASP01112 189 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 KRASP01116 189 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 CBR1P16152 277 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 HLA-DRB3P79483 266 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 ELOBQ15370 118 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 CD226Q15762 336 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 MRPL2Q5T653 305 aaKnown RBP4.72□□□□□ -1.65
SCN1A-201ENST00000303395 DCAF12Q5T6F0 453 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 FIGLAQ6QHK4 219 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 GATSQ8NAP1 163 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 OTOSQ8NHW6 89 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 PPP1R1CQ8WVI7 109 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 FAM71F1Q96KD3 344 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-201ENST00000303395 FAM210BQ96KR6 192 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 FER1L6-AS2Q96M78 137 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 HSF4Q9ULV5 492 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 GAB2Q9UQC2 676 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 KIAA1217Q5T5P2 1943 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 FABP5Q01469 135 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 ROM1Q03395 351 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 ZNF117Q03924 483 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 AESQ08117 197 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 DHRS2Q13268 280 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 CIRBPQ14011 172 aaKnown RBP4.72□□□□□ -1.65
SCN1A-201ENST00000303395 FZD2Q14332 565 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 C18orf21Q32NC0 220 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-201ENST00000303395 IGSF11Q5DX21 431 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 TMEM183AQ8IXX5 376 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 OR2G3Q8NGZ4 309 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 OR52I2Q8NH67 350 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 MS4A6EQ96DS6 147 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 CFAP20Q9Y6A4 193 aaKnown RBP4.72□□□□□ -1.65
SCN1A-201ENST00000303395 MTCH2Q9Y6C9 303 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 OR52A4PA6NMU1 304 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 ZBTB42B2RXF5 422 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 BCAT2O15382 392 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-201ENST00000303395 ORM2P19652 201 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 CEBPDP49716 269 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-201ENST00000303395 PPIAP62937 165 aaKnown RBP4.72□□□□□ -1.65
SCN1A-201ENST00000303395 NR0B2Q15466 257 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 CLLU1OSQ5K130 101 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms