RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 ZNF121P58317 390 aaPredicted RBP12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 OR2Z1Q8NG97 314 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 RAB1BQ9H0U4 201 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 ADAM20O43506 726 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 RAB32Q13637 225 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 CADM3Q8N126 398 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 SYS1Q8N2H4 156 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 IGHA1P01876 353 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 IGHA2P01877 340 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 CSN3P07498 182 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 TIAL1Q01085 375 aaKnown RBP eCLIP12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 OR5C1Q8NGR4 320 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 TM4SF18Q96CE8 201 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 PIK3IP1Q96FE7 263 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 NAA50Q9GZZ1 169 aaKnown RBP12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 LPAR5Q9H1C0 372 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 PRSS8Q16651 343 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 TMEM207Q6UWW9 146 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 SLC39A5Q6ZMH5 540 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 UBTD2Q8WUN7 234 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 MRGPRX4Q96LA9 322 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 SPAG8Q99932 426 aaPredicted RBP12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 SLC17A5Q9NRA2 495 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 UBE2L3P68036 154 aaKnown RBP12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 INSM1Q01101 510 aaPredicted RBP12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 ZC3H3Q8IXZ2 948 aaKnown RBP12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 ZNF502Q8TBZ5 544 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 TIMP4Q99727 224 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 TMEM70Q9BUB7 260 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 C1RLQ9NZP8 487 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 AUP1Q9Y679 476 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 CD3DP04234 171 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 HLA-GP17693 338 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 GNG3P63215 75 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 STXBP6Q8NFX7 210 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 KIR3DX1Q9H7L2 352 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 SLAMF8Q9P0V8 285 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 MPDU1O75352 247 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 SLC2A10O95528 541 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 DUSP2Q05923 314 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 HERPUD1Q15011 391 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 NKAIN1Q4KMZ8 207 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 Q6ZPB1 254 aaPredicted RBP12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 KMT5CQ86Y97 462 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 SPACA9Q96E40 222 aaPredicted RBP12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 ELOVL1Q9BW60 279 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 VCX2Q9H322 139 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 C21orf62-AS1Q17RA5 79 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 MORN4Q8NDC4 146 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 NIPSNAP1Q9BPW8 284 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 KLF16Q9BXK1 252 aaPredicted RBP12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 CXorf36Q9H7Y0 433 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 PPIHO43447 177 aaKnown RBP12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 RNF224P0DH78 156 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 EVX1P49640 407 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 ELFN2Q5R3F8 820 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 PIANPQ8IYJ0 282 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 FAM169BQ8N8A8 192 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 OR2A5Q96R48 311 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 ATOH8Q96SQ7 321 aa12.55□□□□□ -0.4
CCDC88A-201ENST00000263630 A0A096LPE4 126 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 A0A1W2PPZ6 126 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 ST6GAL1P15907 406 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 IL13RA2Q14627 380 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 SPSB1Q96BD6 273 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 WDR13Q9H1Z4 485 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 HS3ST3A1Q9Y663 406 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 FUT3P21217 361 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 SNRPEP62304 92 aaKnown RBP12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 COL1A1P02452 1464 aaPredicted RBP12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 SPANXN1Q5VSR9 72 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 ZNF841Q6ZN19 808 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 OR10G4Q8NGN3 311 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 OR10G9Q8NGN4 311 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 OR10G7Q8NGN6 311 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 CDCA4Q9BXL8 241 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 DEFB127Q9H1M4 99 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 TMEM140Q9NV12 185 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 LIM2P55344 173 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 DUSP8Q13202 625 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 GAB4Q2WGN9 574 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 RTP2Q5QGT7 225 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 Q6ZNX1 250 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 PPIL1Q9Y3C6 166 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 H0YIG0 161 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 RACK1P63244 317 aaKnown RBP12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 TMEM64Q6YI46 380 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 INSM2Q96T92 566 aaPredicted RBP12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 CRISPLD2Q9H0B8 497 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 TSPAN12O95859 305 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 CTSCP53634 463 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 COX20Q5RI15 118 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 SLC25A30Q5SVS4 291 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 STAC2Q6ZMT1 411 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 FAM26EQ8N5C1 309 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 WDTC1Q8N5D0 677 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 PHOSPHO2Q8TCD6 241 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 CTRCQ99895 268 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 RASL11BQ9BPW5 248 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 CNTD2Q9H8S5 307 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms