RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 SPRNQ5BIV9 151 aa12.15□□□□□ -0.46
UPF1-211ENST00000600868 GLT8D1Q68CQ7 371 aa12.15□□□□□ -0.46
UPF1-211ENST00000600868 SPACA5Q96QH8 159 aa12.15□□□□□ -0.46
UPF1-211ENST00000600868 GFI1Q99684 422 aa12.15□□□□□ -0.46
UPF1-211ENST00000600868 UQCC2Q9BRT2 126 aa12.15□□□□□ -0.46
UPF1-211ENST00000600868 PKIBQ9C010 78 aa12.15□□□□□ -0.46
UPF1-211ENST00000600868 METTL17Q9H7H0 456 aaPredicted RBP12.15□□□□□ -0.46
UPF1-211ENST00000600868 SAP30LQ9HAJ7 183 aa12.15□□□□□ -0.46
UPF1-211ENST00000600868 ZNF701Q9NV72 531 aaPredicted RBP12.15□□□□□ -0.46
UPF1-211ENST00000600868 AK6Q9Y3D8 172 aaKnown RBP12.15□□□□□ -0.46
UPF1-211ENST00000600868 TPD52L2O43399 206 aaKnown RBP12.14□□□□□ -0.47
UPF1-211ENST00000600868 CDRT1O95170 752 aa12.14□□□□□ -0.47
UPF1-211ENST00000600868 IL1AP01583 271 aa12.14□□□□□ -0.47
UPF1-211ENST00000600868 RAB3BP20337 219 aa12.14□□□□□ -0.47
UPF1-211ENST00000600868 MPZP25189 248 aa12.14□□□□□ -0.47
UPF1-211ENST00000600868 CDKN1AP38936 164 aa12.14□□□□□ -0.47
UPF1-211ENST00000600868 HAAOP46952 286 aa12.14□□□□□ -0.47
UPF1-211ENST00000600868 SERPINB10P48595 397 aa12.14□□□□□ -0.47
UPF1-211ENST00000600868 MRPS11P82912 194 aaKnown RBP12.14□□□□□ -0.47
UPF1-211ENST00000600868 MPPED2Q15777 294 aa12.14□□□□□ -0.47
UPF1-211ENST00000600868 PRAMEF6Q5VXH4 476 aa12.14□□□□□ -0.47
UPF1-211ENST00000600868 USP43Q70EL4 1123 aa12.14□□□□□ -0.47
UPF1-211ENST00000600868 RNF144BQ7Z419 303 aa12.14□□□□□ -0.47
UPF1-211ENST00000600868 C11orf53Q8IXP5 236 aa12.14□□□□□ -0.47
UPF1-211ENST00000600868 SCCPDHQ8NBX0 429 aa12.14□□□□□ -0.47
UPF1-211ENST00000600868 Q8TCH9 128 aa12.14□□□□□ -0.47
UPF1-211ENST00000600868 NRGNQ92686 78 aa12.14□□□□□ -0.47
UPF1-211ENST00000600868 FN3KRPQ9HA64 309 aa12.14□□□□□ -0.47
UPF1-211ENST00000600868 GCM1Q9NP62 436 aa12.14□□□□□ -0.47
UPF1-211ENST00000600868 BATF3Q9NR55 127 aa12.14□□□□□ -0.47
UPF1-211ENST00000600868 RSL24D1Q9UHA3 163 aaKnown RBP12.14□□□□□ -0.47
UPF1-211ENST00000600868 V9GY05 133 aa12.14□□□□□ -0.47
UPF1-211ENST00000600868 TACC2O95359 2948 aa12.13□□□□□ -0.47
UPF1-211ENST00000600868 A0A0G2JK05 382 aa12.13□□□□□ -0.47
UPF1-211ENST00000600868 CCDC160A6NGH7 325 aa12.13□□□□□ -0.47
UPF1-211ENST00000600868 A6NHS1 94 aa12.13□□□□□ -0.47
UPF1-211ENST00000600868 H3BMQ9 156 aa12.13□□□□□ -0.47
UPF1-211ENST00000600868 J3QT63 122 aa12.13□□□□□ -0.47
UPF1-211ENST00000600868 F12P00748 615 aaPredicted RBP12.13□□□□□ -0.47
UPF1-211ENST00000600868 HPXP02790 462 aa12.13□□□□□ -0.47
UPF1-211ENST00000600868 CFPP27918 469 aa12.13□□□□□ -0.47
UPF1-211ENST00000600868 CFHR2P36980 270 aa12.13□□□□□ -0.47
UPF1-211ENST00000600868 EFNA4P52798 201 aa12.13□□□□□ -0.47
UPF1-211ENST00000600868 OR10A3P58181 314 aa12.13□□□□□ -0.47
UPF1-211ENST00000600868 ZP1P60852 638 aa12.13□□□□□ -0.47
UPF1-211ENST00000600868 PDZK1IP1Q13113 114 aa12.13□□□□□ -0.47
UPF1-211ENST00000600868 RIN1Q13671 783 aa12.13□□□□□ -0.47
UPF1-211ENST00000600868 C1orf100Q5SVJ3 147 aa12.13□□□□□ -0.47
UPF1-211ENST00000600868 HAGHLQ6PII5 290 aaPredicted RBP12.13□□□□□ -0.47
UPF1-211ENST00000600868 NR2C2APQ86WQ0 139 aa12.13□□□□□ -0.47
UPF1-211ENST00000600868 ANGPTL5Q86XS5 388 aa12.13□□□□□ -0.47
UPF1-211ENST00000600868 CALHM1Q8IU99 346 aa12.13□□□□□ -0.47
UPF1-211ENST00000600868 JAGN1Q8N5M9 183 aa12.13□□□□□ -0.47
UPF1-211ENST00000600868 PNLDC1Q8NA58 520 aaKnown RBP12.13□□□□□ -0.47
UPF1-211ENST00000600868 ZSCAN4Q8NAM6 433 aaPredicted RBP12.13□□□□□ -0.47
UPF1-211ENST00000600868 AQP3Q92482 292 aa12.13□□□□□ -0.47
UPF1-211ENST00000600868 C12orf43Q96C57 262 aaKnown RBP12.13□□□□□ -0.47
UPF1-211ENST00000600868 DGCR14Q96DF8 476 aaKnown RBP12.13□□□□□ -0.47
UPF1-211ENST00000600868 GPER1Q99527 375 aa12.13□□□□□ -0.47
UPF1-211ENST00000600868 UFSP2Q9NUQ7 469 aa12.13□□□□□ -0.47
UPF1-211ENST00000600868 PPP1R3CQ9UQK1 317 aa12.13□□□□□ -0.47
UPF1-211ENST00000600868 CACNA1DQ01668 2161 aa12.13□□□□□ -0.47
UPF1-211ENST00000600868 HECTD1Q9ULT8 2610 aa12.12□□□□□ -0.47
UPF1-211ENST00000600868 IGHV3-64DA0A0J9YX35 117 aa12.12□□□□□ -0.47
UPF1-211ENST00000600868 A6NLC8 198 aa12.12□□□□□ -0.47
UPF1-211ENST00000600868 NOTOA8MTQ0 251 aa12.12□□□□□ -0.47
UPF1-211ENST00000600868 IFNL4K9M1U5 179 aa12.12□□□□□ -0.47
UPF1-211ENST00000600868 SLC17A2O00624 439 aa12.12□□□□□ -0.47
UPF1-211ENST00000600868 CDIPTO14735 213 aa12.12□□□□□ -0.47
UPF1-211ENST00000600868 ACAA1P09110 424 aaPredicted RBP12.12□□□□□ -0.47
UPF1-211ENST00000600868 CLEC2LP0C7M8 214 aa12.12□□□□□ -0.47
UPF1-211ENST00000600868 RPS19P39019 145 aaKnown RBP12.12□□□□□ -0.47
UPF1-211ENST00000600868 PMELP40967 661 aa12.12□□□□□ -0.47
UPF1-211ENST00000600868 PTGFRP43088 359 aa12.12□□□□□ -0.47
UPF1-211ENST00000600868 RANBP1P43487 201 aa12.12□□□□□ -0.47
UPF1-211ENST00000600868 MXD1Q05195 221 aa12.12□□□□□ -0.47
UPF1-211ENST00000600868 IL24Q13007 206 aa12.12□□□□□ -0.47
UPF1-211ENST00000600868 SPCS2Q15005 226 aa12.12□□□□□ -0.47
UPF1-211ENST00000600868 ZNF181Q2M3W8 571 aa12.12□□□□□ -0.47
UPF1-211ENST00000600868 FAM166AQ6J272 317 aa12.12□□□□□ -0.47
UPF1-211ENST00000600868 WDR82Q6UXN9 313 aa12.12□□□□□ -0.47
UPF1-211ENST00000600868 MOGAT3Q86VF5 341 aa12.12□□□□□ -0.47
UPF1-211ENST00000600868 CROCCP3Q8IVE0 287 aa12.12□□□□□ -0.47
UPF1-211ENST00000600868 MKXQ8IYA7 352 aa12.12□□□□□ -0.47
UPF1-211ENST00000600868 SAXO1Q8IYX7 474 aa12.12□□□□□ -0.47
UPF1-211ENST00000600868 PXT1Q8NFP0 134 aa12.12□□□□□ -0.47
UPF1-211ENST00000600868 OR6M1Q8NGM8 313 aa12.12□□□□□ -0.47
UPF1-211ENST00000600868 OR10Z1Q8NGY1 313 aa12.12□□□□□ -0.47
UPF1-211ENST00000600868 ZNF671Q8TAW3 534 aa12.12□□□□□ -0.47
UPF1-211ENST00000600868 NDNFQ8TB73 568 aa12.12□□□□□ -0.47
UPF1-211ENST00000600868 RFT1Q96AA3 541 aa12.12□□□□□ -0.47
UPF1-211ENST00000600868 FAM192AQ9GZU8 254 aa12.12□□□□□ -0.47
UPF1-211ENST00000600868 DCSTAMPQ9H295 470 aa12.12□□□□□ -0.47
UPF1-211ENST00000600868 CNTD2Q9H8S5 307 aa12.12□□□□□ -0.47
UPF1-211ENST00000600868 PLEKHA6Q9Y2H5 1048 aa12.12□□□□□ -0.47
UPF1-211ENST00000600868 POLDIP2Q9Y2S7 368 aa12.12□□□□□ -0.47
UPF1-211ENST00000600868 AKAP6Q13023 2319 aa12.12□□□□□ -0.47
UPF1-211ENST00000600868 CHD3Q12873 2000 aaKnown RBP12.11□□□□□ -0.47
UPF1-211ENST00000600868 APCP25054 2843 aa12.11□□□□□ -0.47
UPF1-211ENST00000600868 IGHV1-69-2A0A0G2JMI3 117 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms