RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 MALRD1Q5VYJ5 2156 aa8.01□□□□□ -1.13
TRIM28-208ENST00000597172 H0YL77 283 aa8.01□□□□□ -1.13
TRIM28-208ENST00000597172 SLC22A1O15245 554 aa8.01□□□□□ -1.13
TRIM28-208ENST00000597172 SULT1B1O43704 296 aa8.01□□□□□ -1.13
TRIM28-208ENST00000597172 NCR1O76036 304 aa8.01□□□□□ -1.13
TRIM28-208ENST00000597172 PAX1P15863 534 aa8.01□□□□□ -1.13
TRIM28-208ENST00000597172 ATF1P18846 271 aa8.01□□□□□ -1.13
TRIM28-208ENST00000597172 CA6P23280 308 aa8.01□□□□□ -1.13
TRIM28-208ENST00000597172 APOBEC3AP31941 199 aaPredicted RBP8.01□□□□□ -1.13
TRIM28-208ENST00000597172 SERPINF1P36955 418 aa8.01□□□□□ -1.13
TRIM28-208ENST00000597172 SERPINB10P48595 397 aa8.01□□□□□ -1.13
TRIM28-208ENST00000597172 EVX1P49640 407 aa8.01□□□□□ -1.13
TRIM28-208ENST00000597172 ATP5J2P56134 94 aa8.01□□□□□ -1.13
TRIM28-208ENST00000597172 CAV3P56539 151 aa8.01□□□□□ -1.13
TRIM28-208ENST00000597172 KLF3P57682 345 aaPredicted RBP8.01□□□□□ -1.13
TRIM28-208ENST00000597172 OR10A3P58181 314 aa8.01□□□□□ -1.13
TRIM28-208ENST00000597172 MXD1Q05195 221 aa8.01□□□□□ -1.13
TRIM28-208ENST00000597172 PRDX4Q13162 271 aa8.01□□□□□ -1.13
TRIM28-208ENST00000597172 CEACAM21Q3KPI0 293 aa8.01□□□□□ -1.13
TRIM28-208ENST00000597172 C20orf204Q6ZNR8 217 aa8.01□□□□□ -1.13
TRIM28-208ENST00000597172 USP43Q70EL4 1123 aa8.01□□□□□ -1.13
TRIM28-208ENST00000597172 MOB3CQ70IA8 216 aa8.01□□□□□ -1.13
TRIM28-208ENST00000597172 DNAAF1Q8NEP3 725 aa8.01□□□□□ -1.13
TRIM28-208ENST00000597172 OR52N4Q8NGI2 321 aa8.01□□□□□ -1.13
TRIM28-208ENST00000597172 OR13C9Q8NGT0 318 aa8.01□□□□□ -1.13
TRIM28-208ENST00000597172 HPSE2Q8WWQ2 592 aa8.01□□□□□ -1.13
TRIM28-208ENST00000597172 OR5P3Q8WZ94 311 aa8.01□□□□□ -1.13
TRIM28-208ENST00000597172 DVL3Q92997 716 aaPredicted RBP8.01□□□□□ -1.13
TRIM28-208ENST00000597172 DHRS9Q9BPW9 319 aa8.01□□□□□ -1.13
TRIM28-208ENST00000597172 DCSTAMPQ9H295 470 aa8.01□□□□□ -1.13
TRIM28-208ENST00000597172 PLK3Q9H4B4 646 aa8.01□□□□□ -1.13
TRIM28-208ENST00000597172 PLEKHA1Q9HB21 404 aa8.01□□□□□ -1.13
TRIM28-208ENST00000597172 MSL2Q9HCI7 577 aa8.01□□□□□ -1.13
TRIM28-208ENST00000597172 TCF7L1Q9HCS4 588 aa8.01□□□□□ -1.13
TRIM28-208ENST00000597172 TMEM100Q9NV29 134 aa8.01□□□□□ -1.13
TRIM28-208ENST00000597172 IGKV1-27A0A075B6S5 117 aa8□□□□□ -1.13
TRIM28-208ENST00000597172 A0A1W2PPW3 197 aa8□□□□□ -1.13
TRIM28-208ENST00000597172 SMIM30A4D0T7 59 aa8□□□□□ -1.13
TRIM28-208ENST00000597172 ANKRD30BLA7E2S9 258 aa8□□□□□ -1.13
TRIM28-208ENST00000597172 VSTM5A8MXK1 200 aa8□□□□□ -1.13
TRIM28-208ENST00000597172 MLNRO43193 412 aa8□□□□□ -1.13
TRIM28-208ENST00000597172 TIMM8AO60220 97 aaPredicted RBP8□□□□□ -1.13
TRIM28-208ENST00000597172 IL1AP01583 271 aa8□□□□□ -1.13
TRIM28-208ENST00000597172 CD8AP01732 235 aa8□□□□□ -1.13
TRIM28-208ENST00000597172 ALDOBP05062 364 aa8□□□□□ -1.13
TRIM28-208ENST00000597172 RAB3AP20336 220 aa8□□□□□ -1.13
TRIM28-208ENST00000597172 MYL9P24844 172 aa8□□□□□ -1.13
TRIM28-208ENST00000597172 BDKRB2P30411 391 aa8□□□□□ -1.13
TRIM28-208ENST00000597172 EFNB3Q15768 340 aa8□□□□□ -1.13
TRIM28-208ENST00000597172 SWI5Q1ZZU3 235 aa8□□□□□ -1.13
TRIM28-208ENST00000597172 CLEC12BQ2HXU8 276 aa8□□□□□ -1.13
TRIM28-208ENST00000597172 MIDNQ504T8 468 aa8□□□□□ -1.13
TRIM28-208ENST00000597172 TPRA1Q86W33 373 aa8□□□□□ -1.13
TRIM28-208ENST00000597172 ZDHHC23Q8IYP9 409 aa8□□□□□ -1.13
TRIM28-208ENST00000597172 DYNC2LI1Q8TCX1 351 aa8□□□□□ -1.13
TRIM28-208ENST00000597172 NPRL2Q8WTW4 380 aa8□□□□□ -1.13
TRIM28-208ENST00000597172 ITPKCQ96DU7 683 aa8□□□□□ -1.13
TRIM28-208ENST00000597172 SPACA5Q96QH8 159 aa8□□□□□ -1.13
TRIM28-208ENST00000597172 NKX3-1Q99801 234 aaPredicted RBP8□□□□□ -1.13
TRIM28-208ENST00000597172 PAPOLGQ9BWT3 736 aaKnown RBP8□□□□□ -1.13
TRIM28-208ENST00000597172 KRTAP17-1Q9BYP8 105 aa8□□□□□ -1.13
TRIM28-208ENST00000597172 BARHL1Q9BZE3 327 aa8□□□□□ -1.13
TRIM28-208ENST00000597172 SHARPINQ9H0F6 387 aa8□□□□□ -1.13
TRIM28-208ENST00000597172 TPK1Q9H3S4 243 aa8□□□□□ -1.13
TRIM28-208ENST00000597172 TMEM138Q9NPI0 162 aa8□□□□□ -1.13
TRIM28-208ENST00000597172 ZNF701Q9NV72 531 aaPredicted RBP8□□□□□ -1.13
TRIM28-208ENST00000597172 TMEM160Q9NX00 188 aa8□□□□□ -1.13
TRIM28-208ENST00000597172 CKLFQ9UBR5 152 aa8□□□□□ -1.13
TRIM28-208ENST00000597172 MPC1Q9Y5U8 109 aa8□□□□□ -1.13
TRIM28-208ENST00000597172 LOC100289279A0A1B0GTE1 492 aa7.99□□□□□ -1.13
TRIM28-208ENST00000597172 MEGF11A6BM72 1044 aa7.99□□□□□ -1.13
TRIM28-208ENST00000597172 ZSCAN5BA6NJL1 495 aa7.99□□□□□ -1.13
TRIM28-208ENST00000597172 HS3ST1O14792 307 aa7.99□□□□□ -1.13
TRIM28-208ENST00000597172 NOL3O60936 208 aaKnown RBP7.99□□□□□ -1.13
TRIM28-208ENST00000597172 DANCRP0C864 163 aa7.99□□□□□ -1.13
TRIM28-208ENST00000597172 NAT2P11245 290 aa7.99□□□□□ -1.13
TRIM28-208ENST00000597172 ZNF182P17025 639 aaPredicted RBP7.99□□□□□ -1.13
TRIM28-208ENST00000597172 SRD5A1P18405 259 aa7.99□□□□□ -1.13
TRIM28-208ENST00000597172 RAB3BP20337 219 aa7.99□□□□□ -1.13
TRIM28-208ENST00000597172 AZGP1P25311 298 aaKnown RBP7.99□□□□□ -1.13
TRIM28-208ENST00000597172 ALDH3B1P43353 468 aa7.99□□□□□ -1.13
TRIM28-208ENST00000597172 FUT6P51993 359 aa7.99□□□□□ -1.13
TRIM28-208ENST00000597172 SELENOVP59797 346 aa7.99□□□□□ -1.13
TRIM28-208ENST00000597172 PPP3R1P63098 170 aa7.99□□□□□ -1.13
TRIM28-208ENST00000597172 CNPY1Q3B7I2 92 aa7.99□□□□□ -1.13
TRIM28-208ENST00000597172 SPRNQ5BIV9 151 aa7.99□□□□□ -1.13
TRIM28-208ENST00000597172 FAM76BQ5HYJ3 339 aa7.99□□□□□ -1.13
TRIM28-208ENST00000597172 PLCXD3Q63HM9 321 aa7.99□□□□□ -1.13
TRIM28-208ENST00000597172 FAM166AQ6J272 317 aa7.99□□□□□ -1.13
TRIM28-208ENST00000597172 ZCCHC24Q8N2G6 241 aaKnown RBP7.99□□□□□ -1.13
TRIM28-208ENST00000597172 OR5A2Q8NGI9 324 aa7.99□□□□□ -1.13
TRIM28-208ENST00000597172 OR13G1Q8NGZ3 307 aa7.99□□□□□ -1.13
TRIM28-208ENST00000597172 TRMT10AQ8TBZ6 339 aaKnown RBP7.99□□□□□ -1.13
TRIM28-208ENST00000597172 SLC25A28Q96A46 364 aa7.99□□□□□ -1.13
TRIM28-208ENST00000597172 SLC25A46Q96AG3 418 aa7.99□□□□□ -1.13
TRIM28-208ENST00000597172 SLITRK2Q9H156 845 aa7.99□□□□□ -1.13
TRIM28-208ENST00000597172 CGGBP1Q9UFW8 167 aaPredicted RBP7.99□□□□□ -1.13
TRIM28-208ENST00000597172 PMF1-BGLAPU3KQ54 211 aa7.99□□□□□ -1.13
TRIM28-208ENST00000597172 V9GY05 133 aa7.99□□□□□ -1.13
TRIM28-208ENST00000597172 FAM230AA0A1W2PPH8 454 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms