RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 PLXDC1Q8IUK5 500 aa13.46□□□□□ -0.25
UPF1-204ENST00000596842 ASB13Q8WXK3 278 aa13.46□□□□□ -0.25
UPF1-204ENST00000596842 NECAB3Q96P71 396 aaPredicted RBP13.46□□□□□ -0.25
UPF1-204ENST00000596842 PLEKHJ1Q9NW61 149 aa13.46□□□□□ -0.25
UPF1-204ENST00000596842 PRRC2CQ9Y520 2896 aaKnown RBP13.46□□□□□ -0.25
UPF1-204ENST00000596842 LILRA5A6NI73 299 aa13.46□□□□□ -0.25
UPF1-204ENST00000596842 MBTPS2O43462 519 aa13.46□□□□□ -0.25
UPF1-204ENST00000596842 EFNA2O43921 213 aa13.46□□□□□ -0.25
UPF1-204ENST00000596842 LPAR6P43657 344 aa13.46□□□□□ -0.25
UPF1-204ENST00000596842 PHF19Q5T6S3 580 aa13.46□□□□□ -0.25
UPF1-204ENST00000596842 MFSD8Q8NHS3 518 aa13.46□□□□□ -0.25
UPF1-204ENST00000596842 DYRK2Q92630 601 aa13.46□□□□□ -0.25
UPF1-204ENST00000596842 IGHV1OR21-1A0A087WYE8 117 aa13.46□□□□□ -0.26
UPF1-204ENST00000596842 FAM230AA0A1W2PPH8 454 aa13.46□□□□□ -0.26
UPF1-204ENST00000596842 A0A1W2PQD3 144 aa13.46□□□□□ -0.26
UPF1-204ENST00000596842 ZNHIT1O43257 154 aa13.46□□□□□ -0.26
UPF1-204ENST00000596842 SFT2D2O95562 160 aa13.46□□□□□ -0.26
UPF1-204ENST00000596842 DBHP09172 617 aa13.46□□□□□ -0.26
UPF1-204ENST00000596842 EIF2S3P41091 472 aaKnown RBP13.46□□□□□ -0.26
UPF1-204ENST00000596842 AFF3P51826 1226 aaKnown RBP13.46□□□□□ -0.26
UPF1-204ENST00000596842 RIPPLY1Q0D2K3 151 aa13.46□□□□□ -0.26
UPF1-204ENST00000596842 Q6ZRG5 221 aa13.46□□□□□ -0.26
UPF1-204ENST00000596842 DTWD2Q8NBA8 298 aa13.46□□□□□ -0.26
UPF1-204ENST00000596842 SLC38A9Q8NBW4 561 aa13.46□□□□□ -0.26
UPF1-204ENST00000596842 ZNF2Q9BSG1 426 aaPredicted RBP13.46□□□□□ -0.26
UPF1-204ENST00000596842 SMCO4Q9NRQ5 59 aa13.46□□□□□ -0.26
UPF1-204ENST00000596842 GPR132Q9UNW8 380 aa13.46□□□□□ -0.26
UPF1-204ENST00000596842 MMP24Q9Y5R2 645 aa13.46□□□□□ -0.26
UPF1-204ENST00000596842 ADAM10O14672 748 aa13.45□□□□□ -0.26
UPF1-204ENST00000596842 OR56B1Q8NGI3 324 aa13.45□□□□□ -0.26
UPF1-204ENST00000596842 REEP6Q96HR9 211 aa13.45□□□□□ -0.26
UPF1-204ENST00000596842 CLCC1Q96S66 551 aa13.45□□□□□ -0.26
UPF1-204ENST00000596842 SLC2A8Q9NY64 477 aa13.45□□□□□ -0.26
UPF1-204ENST00000596842 FER1L5A0AVI2 2057 aa13.45□□□□□ -0.26
UPF1-204ENST00000596842 NUP210LQ5VU65 1888 aa13.45□□□□□ -0.26
UPF1-204ENST00000596842 IGHV1OR15-9A0A0B4J2B8 117 aa13.45□□□□□ -0.26
UPF1-204ENST00000596842 LIPT2A6NK58 231 aa13.45□□□□□ -0.26
UPF1-204ENST00000596842 ZNF850A8MQ14 1090 aa13.45□□□□□ -0.26
UPF1-204ENST00000596842 K7EPK0 472 aa13.45□□□□□ -0.26
UPF1-204ENST00000596842 PJVKQ0ZLH3 352 aa13.45□□□□□ -0.26
UPF1-204ENST00000596842 KISS1Q15726 138 aa13.45□□□□□ -0.26
UPF1-204ENST00000596842 PHLDA2Q53GA4 152 aa13.45□□□□□ -0.26
UPF1-204ENST00000596842 OR5AS1Q8N127 324 aa13.45□□□□□ -0.26
UPF1-204ENST00000596842 FAM71E2Q8N5Q1 922 aa13.45□□□□□ -0.26
UPF1-204ENST00000596842 SECTM1Q8WVN6 248 aa13.45□□□□□ -0.26
UPF1-204ENST00000596842 PUS1Q9Y606 427 aaKnown RBP eCLIP13.45□□□□□ -0.26
UPF1-204ENST00000596842 LOC390937A0A1W2PQ73 354 aa13.45□□□□□ -0.26
UPF1-204ENST00000596842 OR5H15A6NDH6 313 aa13.45□□□□□ -0.26
UPF1-204ENST00000596842 E9PLN8 166 aa13.45□□□□□ -0.26
UPF1-204ENST00000596842 CHRM2P08172 466 aa13.45□□□□□ -0.26
UPF1-204ENST00000596842 ZNF25P17030 456 aaPredicted RBP13.45□□□□□ -0.26
UPF1-204ENST00000596842 GPX4P36969 197 aaPredicted RBP13.45□□□□□ -0.26
UPF1-204ENST00000596842 TAF9Q16594 264 aa13.45□□□□□ -0.26
UPF1-204ENST00000596842 LPAR3Q9UBY5 353 aa13.45□□□□□ -0.26
UPF1-204ENST00000596842 TMEM14DPA8MWL7 114 aa13.44□□□□□ -0.26
UPF1-204ENST00000596842 APOBEC1P41238 236 aaKnown RBP13.44□□□□□ -0.26
UPF1-204ENST00000596842 OR2AE1Q8NHA4 323 aa13.44□□□□□ -0.26
UPF1-204ENST00000596842 CYTL1Q9NRR1 136 aa13.44□□□□□ -0.26
UPF1-204ENST00000596842 ANKUB1A6NFN9 424 aa13.44□□□□□ -0.26
UPF1-204ENST00000596842 RNASEK-C17orf49H0YIS7 233 aa13.44□□□□□ -0.26
UPF1-204ENST00000596842 C1QL1O75973 258 aa13.44□□□□□ -0.26
UPF1-204ENST00000596842 PNLIPP16233 465 aa13.44□□□□□ -0.26
UPF1-204ENST00000596842 GALNSP34059 522 aa13.44□□□□□ -0.26
UPF1-204ENST00000596842 SUPT4H1P63272 117 aaKnown RBP13.44□□□□□ -0.26
UPF1-204ENST00000596842 ACY1Q03154 408 aa13.44□□□□□ -0.26
UPF1-204ENST00000596842 COL13A1Q5TAT6 717 aaPredicted RBP13.44□□□□□ -0.26
UPF1-204ENST00000596842 UQCC3Q6UW78 93 aa13.44□□□□□ -0.26
UPF1-204ENST00000596842 SULF2Q8IWU5 870 aa13.44□□□□□ -0.26
UPF1-204ENST00000596842 DOCK7Q96N67 2140 aa13.44□□□□□ -0.26
UPF1-204ENST00000596842 OR6C1Q96RD1 312 aa13.44□□□□□ -0.26
UPF1-204ENST00000596842 DNAJB11Q9UBS4 358 aa13.44□□□□□ -0.26
UPF1-204ENST00000596842 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.44□□□□□ -0.26
UPF1-204ENST00000596842 SPRY1O43609 319 aaPredicted RBP13.44□□□□□ -0.26
UPF1-204ENST00000596842 TIAF1O95411 115 aa13.44□□□□□ -0.26
UPF1-204ENST00000596842 FCGR2CP31995 323 aa13.44□□□□□ -0.26
UPF1-204ENST00000596842 FHITP49789 147 aa13.44□□□□□ -0.26
UPF1-204ENST00000596842 RGS19P49795 217 aa13.44□□□□□ -0.26
UPF1-204ENST00000596842 QRFPP83859 136 aa13.44□□□□□ -0.26
UPF1-204ENST00000596842 PRSS54Q6PEW0 395 aa13.44□□□□□ -0.26
UPF1-204ENST00000596842 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.44□□□□□ -0.26
UPF1-204ENST00000596842 DMRTC2Q8IXT2 367 aaPredicted RBP13.44□□□□□ -0.26
UPF1-204ENST00000596842 HSD17B11Q8NBQ5 300 aa13.44□□□□□ -0.26
UPF1-204ENST00000596842 FNDC9Q8TBE3 224 aa13.44□□□□□ -0.26
UPF1-204ENST00000596842 MYOZ1Q9NP98 299 aaPredicted RBP13.44□□□□□ -0.26
UPF1-204ENST00000596842 MMP26Q9NRE1 261 aa13.44□□□□□ -0.26
UPF1-204ENST00000596842 GPR173Q9NS66 373 aa13.44□□□□□ -0.26
UPF1-204ENST00000596842 PLEK2Q9NYT0 353 aa13.44□□□□□ -0.26
UPF1-204ENST00000596842 NXT1Q9UKK6 140 aaKnown RBP13.44□□□□□ -0.26
UPF1-204ENST00000596842 AMDHD2Q9Y303 409 aa13.44□□□□□ -0.26
UPF1-204ENST00000596842 IGKV1D-8A0A087WSZ0 117 aa13.43□□□□□ -0.26
UPF1-204ENST00000596842 LMO7DNF2Z398 122 aa13.43□□□□□ -0.26
UPF1-204ENST00000596842 OR8U9P0C7N5 309 aa13.43□□□□□ -0.26
UPF1-204ENST00000596842 P2RY4P51582 365 aa13.43□□□□□ -0.26
UPF1-204ENST00000596842 DEGS2Q6QHC5 323 aa13.43□□□□□ -0.26
UPF1-204ENST00000596842 OR8U1Q8NH10 309 aa13.43□□□□□ -0.26
UPF1-204ENST00000596842 NRIP2Q9BQI9 281 aa13.43□□□□□ -0.26
UPF1-204ENST00000596842 RTBDNQ9BSG5 229 aaPredicted RBP13.43□□□□□ -0.26
UPF1-204ENST00000596842 NMES1Q9C002 83 aa13.43□□□□□ -0.26
UPF1-204ENST00000596842 PIGLQ9Y2B2 252 aa13.43□□□□□ -0.26
UPF1-204ENST00000596842 B3GALT5Q9Y2C3 310 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms