RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 LILRA1O75019 489 aa13.02□□□□□ -0.33
SS18-215ENST00000580642 TNFSF4P23510 183 aa13.02□□□□□ -0.33
SS18-215ENST00000580642 CD200P41217 278 aa13.02□□□□□ -0.33
SS18-215ENST00000580642 POU3F4P49335 361 aa13.02□□□□□ -0.33
SS18-215ENST00000580642 ART1P52961 327 aa13.02□□□□□ -0.33
SS18-215ENST00000580642 PRSS12P56730 875 aa13.02□□□□□ -0.33
SS18-215ENST00000580642 QRFPP83859 136 aa13.02□□□□□ -0.33
SS18-215ENST00000580642 IL24Q13007 206 aa13.02□□□□□ -0.33
SS18-215ENST00000580642 MSMPQ1L6U9 139 aa13.02□□□□□ -0.33
SS18-215ENST00000580642 ALKBH6Q3KRA9 238 aa13.02□□□□□ -0.33
SS18-215ENST00000580642 AWAT2Q6E213 333 aa13.02□□□□□ -0.33
SS18-215ENST00000580642 CRIP3Q6Q6R5 217 aa13.02□□□□□ -0.33
SS18-215ENST00000580642 VHLLQ6RSH7 139 aa13.02□□□□□ -0.33
SS18-215ENST00000580642 CCDC190Q86UF4 302 aa13.02□□□□□ -0.33
SS18-215ENST00000580642 SAMD12Q8N8I0 201 aa13.02□□□□□ -0.33
SS18-215ENST00000580642 Q8NFD4 153 aa13.02□□□□□ -0.33
SS18-215ENST00000580642 OR51D1Q8NGF3 324 aa13.02□□□□□ -0.33
SS18-215ENST00000580642 LGALS14Q8TCE9 139 aa13.02□□□□□ -0.33
SS18-215ENST00000580642 C15orf40Q8WUR7 153 aa13.02□□□□□ -0.33
SS18-215ENST00000580642 TNFAIP8L1Q8WVP5 186 aa13.02□□□□□ -0.33
SS18-215ENST00000580642 ERGIC1Q969X5 290 aa13.02□□□□□ -0.33
SS18-215ENST00000580642 PIK3IP1Q96FE7 263 aa13.02□□□□□ -0.33
SS18-215ENST00000580642 NUDT16L1Q9BRJ7 211 aaKnown RBP13.02□□□□□ -0.33
SS18-215ENST00000580642 METTL9Q9H1A3 318 aa13.02□□□□□ -0.33
SS18-215ENST00000580642 TLNRD1Q9H1K6 362 aa13.02□□□□□ -0.33
SS18-215ENST00000580642 OR51I2Q9H344 312 aa13.02□□□□□ -0.33
SS18-215ENST00000580642 CISD1Q9NZ45 108 aaKnown RBP13.02□□□□□ -0.33
SS18-215ENST00000580642 TAAR3PQ9P1P4 343 aa13.02□□□□□ -0.33
SS18-215ENST00000580642 POLDIP2Q9Y2S7 368 aa13.02□□□□□ -0.33
SS18-215ENST00000580642 DOPEY1Q5JWR5 2465 aa13.02□□□□□ -0.33
SS18-215ENST00000580642 IGKV1-27A0A075B6S5 117 aa13.01□□□□□ -0.33
SS18-215ENST00000580642 METTL21EPA6NDL7 271 aa13.01□□□□□ -0.33
SS18-215ENST00000580642 TMEM14DPA8MWL7 114 aa13.01□□□□□ -0.33
SS18-215ENST00000580642 CLDN25C9JDP6 229 aa13.01□□□□□ -0.33
SS18-215ENST00000580642 H3BUI4 141 aa13.01□□□□□ -0.33
SS18-215ENST00000580642 J3QT63 122 aa13.01□□□□□ -0.33
SS18-215ENST00000580642 SIAH2O43255 324 aa13.01□□□□□ -0.33
SS18-215ENST00000580642 PAHP00439 452 aa13.01□□□□□ -0.33
SS18-215ENST00000580642 CD55P08174 381 aa13.01□□□□□ -0.33
SS18-215ENST00000580642 TMEM225BP0DP42 221 aa13.01□□□□□ -0.33
SS18-215ENST00000580642 SNRPBP14678 240 aaKnown RBP13.01□□□□□ -0.33
SS18-215ENST00000580642 TNFSF8P32971 234 aa13.01□□□□□ -0.33
SS18-215ENST00000580642 NR4A2P43354 598 aa13.01□□□□□ -0.33
SS18-215ENST00000580642 GPM6AP51674 278 aa13.01□□□□□ -0.33
SS18-215ENST00000580642 NKPD1Q17RQ9 610 aa13.01□□□□□ -0.33
SS18-215ENST00000580642 TMEM255AQ5JRV8 349 aa13.01□□□□□ -0.33
SS18-215ENST00000580642 RAB12Q6IQ22 244 aa13.01□□□□□ -0.33
SS18-215ENST00000580642 GLIPR1L1Q6UWM5 242 aa13.01□□□□□ -0.33
SS18-215ENST00000580642 Q8IYB0 196 aa13.01□□□□□ -0.33
SS18-215ENST00000580642 NPRL2Q8WTW4 380 aa13.01□□□□□ -0.33
SS18-215ENST00000580642 S100A16Q96FQ6 103 aaKnown RBP13.01□□□□□ -0.33
SS18-215ENST00000580642 C1orf147Q96MC9 270 aaPredicted RBP13.01□□□□□ -0.33
SS18-215ENST00000580642 WDR12Q9GZL7 423 aaKnown RBP13.01□□□□□ -0.33
SS18-215ENST00000580642 MIXL1Q9H2W2 232 aa13.01□□□□□ -0.33
SS18-215ENST00000580642 MS4A5Q9H3V2 200 aa13.01□□□□□ -0.33
SS18-215ENST00000580642 AKIP1Q9NQ31 210 aa13.01□□□□□ -0.33
SS18-215ENST00000580642 FAIMQ9NVQ4 179 aa13.01□□□□□ -0.33
SS18-215ENST00000580642 PRR14LQ5THK1 2151 aa13□□□□□ -0.33
SS18-215ENST00000580642 MLNRO43193 412 aa13□□□□□ -0.33
SS18-215ENST00000580642 AKR7A2O43488 359 aa13□□□□□ -0.33
SS18-215ENST00000580642 HPGDSO60760 199 aa13□□□□□ -0.33
SS18-215ENST00000580642 CHRM2P08172 466 aa13□□□□□ -0.33
SS18-215ENST00000580642 INHBBP09529 407 aa13□□□□□ -0.33
SS18-215ENST00000580642 PLA2G2AP14555 144 aa13□□□□□ -0.33
SS18-215ENST00000580642 MNDAP41218 407 aa13□□□□□ -0.33
SS18-215ENST00000580642 GATA4P43694 442 aa13□□□□□ -0.33
SS18-215ENST00000580642 OR3A4PP47883 348 aa13□□□□□ -0.33
SS18-215ENST00000580642 SRP9P49458 86 aaKnown RBP13□□□□□ -0.33
SS18-215ENST00000580642 ZNF81P51508 661 aa13□□□□□ -0.33
SS18-215ENST00000580642 CLDN12P56749 244 aa13□□□□□ -0.33
SS18-215ENST00000580642 SNTB1Q13884 538 aaKnown RBP13□□□□□ -0.33
SS18-215ENST00000580642 ZNF846Q147U1 533 aa13□□□□□ -0.33
SS18-215ENST00000580642 P2RY14Q15391 338 aa13□□□□□ -0.33
SS18-215ENST00000580642 PCGF3Q3KNV8 242 aa13□□□□□ -0.33
SS18-215ENST00000580642 ELP2Q6IA86 826 aa13□□□□□ -0.33
SS18-215ENST00000580642 MEX3BQ6ZN04 569 aaKnown RBP13□□□□□ -0.33
SS18-215ENST00000580642 Q6ZR03 302 aa13□□□□□ -0.33
SS18-215ENST00000580642 LRP11Q86VZ4 500 aa13□□□□□ -0.33
SS18-215ENST00000580642 DIRAS2Q96HU8 199 aa13□□□□□ -0.33
SS18-215ENST00000580642 SYT3Q9BQG1 590 aa13□□□□□ -0.33
SS18-215ENST00000580642 URM1Q9BTM9 101 aaKnown RBP13□□□□□ -0.33
SS18-215ENST00000580642 RHBDL2Q9NX52 303 aa13□□□□□ -0.33
SS18-215ENST00000580642 IL19Q9UHD0 177 aa13□□□□□ -0.33
SS18-215ENST00000580642 FZR1Q9UM11 496 aa13□□□□□ -0.33
SS18-215ENST00000580642 HEATR1Q9H583 2144 aaKnown RBP13□□□□□ -0.33
SS18-215ENST00000580642 CHD6Q8TD26 2715 aa12.99□□□□□ -0.33
SS18-215ENST00000580642 TMEM272A0A1B0GTI8 110 aa12.99□□□□□ -0.33
SS18-215ENST00000580642 FAM221AA4D161 298 aa12.99□□□□□ -0.33
SS18-215ENST00000580642 A6NNC1 897 aa12.99□□□□□ -0.33
SS18-215ENST00000580642 C19orf84I3L1E1 186 aa12.99□□□□□ -0.33
SS18-215ENST00000580642 M0R233 179 aa12.99□□□□□ -0.33
SS18-215ENST00000580642 TPD52L2O43399 206 aaKnown RBP12.99□□□□□ -0.33
SS18-215ENST00000580642 NOS1APO75052 506 aaPredicted RBP12.99□□□□□ -0.33
SS18-215ENST00000580642 KDM4BO94953 1096 aa12.99□□□□□ -0.33
SS18-215ENST00000580642 VSIG8P0DPA2 414 aa12.99□□□□□ -0.33
SS18-215ENST00000580642 BMP4P12644 408 aa12.99□□□□□ -0.33
SS18-215ENST00000580642 CD40LGP29965 261 aa12.99□□□□□ -0.33
SS18-215ENST00000580642 CFHR2P36980 270 aa12.99□□□□□ -0.33
SS18-215ENST00000580642 HAAOP46952 286 aa12.99□□□□□ -0.33
SS18-215ENST00000580642 SRSF1Q07955 248 aaKnown RBP eCLIP12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms