RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 ACKR3P25106 362 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 LPAR6P43657 344 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 CSNK1A1P48729 337 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 GRB2P62993 217 aaKnown RBP6.56□□□□□ -1.36
LIMA1-213ENST00000552720 CYCSP99999 105 aaKnown RBP6.56□□□□□ -1.36
LIMA1-213ENST00000552720 ECH1Q13011 328 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 CHAF1BQ13112 559 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 IL15RAQ13261 267 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 RBM39Q14498 530 aaKnown RBP6.56□□□□□ -1.36
LIMA1-213ENST00000552720 CHRFAM7AQ494W8 412 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 ACTBL2Q562R1 376 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 SVBPQ8N300 66 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 FADS6Q8N9I5 356 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 ADPRHL1Q8NDY3 354 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 SLC22A8Q8TCC7 542 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 NABP1Q96AH0 204 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 FBXO17Q96EF6 278 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 SHDQ96IW2 340 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 C2orf50Q96LR7 162 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 AQP10Q96PS8 301 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 ZNF2Q9BSG1 426 aaPredicted RBP6.56□□□□□ -1.36
LIMA1-213ENST00000552720 UQCC1Q9NVA1 299 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 NBEAQ8NFP9 2946 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 DOCK10Q96BY6 2186 aa6.56□□□□□ -1.36
LIMA1-213ENST00000552720 C9JQL5 133 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 NDUFA2O43678 99 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 DHRS3O75911 302 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 PATE4P0C8F1 98 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 HKR1P10072 659 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 LYL1P12980 280 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 ZNF708P17019 499 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 PRKACAP17612 351 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 MSR1P21757 451 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 OPRM1P35372 400 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 H3F3AP84243 136 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 NAAAQ02083 359 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 HGFACQ04756 655 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 TAF9Q16594 264 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 SP6Q3SY56 376 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 RAET1LQ5VY80 246 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 ETV3LQ6ZN32 361 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 IQCF2Q8IXL9 164 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 SEMA6DQ8NFY4 1073 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 ADAMTS17Q8TE56 1095 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 CNTNAP3BQ96NU0 1288 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 PIGQQ9BRB3 760 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 FAAP24Q9BTP7 215 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 NELFAQ9H3P2 528 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 PLEK2Q9NYT0 353 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 LPAR3Q9UBY5 353 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 DSPP15924 2871 aaKnown RBP6.55□□□□□ -1.36
LIMA1-213ENST00000552720 FAM221AA4D161 298 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 FIGNL2A6NMB9 653 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 M0R135 149 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 MED6O75586 246 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 SCGB1D2O95969 90 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 NTF4P34130 210 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 SLC35A1P78382 337 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 PJVKQ0ZLH3 352 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 PDCD1Q15116 288 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 IAH1Q2TAA2 248 aaPredicted RBP6.55□□□□□ -1.36
LIMA1-213ENST00000552720 CCDC157Q569K6 752 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 TSPO2Q5TGU0 170 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.55□□□□□ -1.36
LIMA1-213ENST00000552720 PPP1R3BQ86XI6 285 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 LINC00518Q8N0U6 118 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 BATF2Q8N1L9 274 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 GJC3Q8NFK1 279 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 MRPL24Q96A35 216 aaKnown RBP6.55□□□□□ -1.36
LIMA1-213ENST00000552720 SGK3Q96BR1 496 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 BSCL2Q96G97 398 aaPredicted RBP6.55□□□□□ -1.36
LIMA1-213ENST00000552720 ZNF799Q96GE5 643 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 NECAB3Q96P71 396 aaPredicted RBP6.55□□□□□ -1.36
LIMA1-213ENST00000552720 S100A13Q99584 98 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 NRIP2Q9BQI9 281 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 CHST5Q9GZS9 411 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 PCED1AQ9H1Q7 454 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 RHOFQ9HBH0 211 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 PROK2Q9HC23 129 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 MMP26Q9NRE1 261 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 PRELID3BQ9Y3B1 194 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 HDGFL3Q9Y3E1 203 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 V9GYS6 101 aa6.55□□□□□ -1.36
LIMA1-213ENST00000552720 IGKV1-27A0A075B6S5 117 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 FAM230AA0A1W2PPH8 454 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 H7C2Y5 167 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 TNFSF11O14788 317 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 ZNHIT1O43257 154 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 H2AFB1P0C5Y9 115 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 TMEM225BP0DP42 221 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 PVALBP20472 110 aaPredicted RBP6.54□□□□□ -1.36
LIMA1-213ENST00000552720 CTSSP25774 331 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 THBS4P35443 961 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 RPL35P42766 123 aaKnown RBP6.54□□□□□ -1.36
LIMA1-213ENST00000552720 TAS2R46P59540 309 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 FLI1Q01543 452 aaPredicted RBP6.54□□□□□ -1.36
LIMA1-213ENST00000552720 PCOLCEQ15113 449 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 STK11Q15831 433 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 C10orf91Q5T1B1 145 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 MRPL14Q6P1L8 145 aaKnown RBP6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms