RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 C13orf42A0A1B0GVH6 325 aa15.7■□□□□ 0.1
VIM-209ENST00000544301 C9orf172C9J069 976 aa15.7■□□□□ 0.1
VIM-209ENST00000544301 CYTIPO60759 359 aa15.7■□□□□ 0.1
VIM-209ENST00000544301 CA11O75493 328 aa15.7■□□□□ 0.1
VIM-209ENST00000544301 SFT2D2O95562 160 aa15.7■□□□□ 0.1
VIM-209ENST00000544301 JMJD7P0C870 316 aa15.7■□□□□ 0.1
VIM-209ENST00000544301 PI3P19957 117 aa15.7■□□□□ 0.1
VIM-209ENST00000544301 HTR5AP47898 357 aa15.7■□□□□ 0.1
VIM-209ENST00000544301 BEX5Q5H9J7 111 aa15.7■□□□□ 0.1
VIM-209ENST00000544301 RIPPLY2Q5TAB7 128 aa15.7■□□□□ 0.1
VIM-209ENST00000544301 SPINK14Q6IE38 97 aa15.7■□□□□ 0.1
VIM-209ENST00000544301 CLEC18BQ6UXF7 455 aa15.7■□□□□ 0.1
VIM-209ENST00000544301 ZC3HAV1Q7Z2W4 902 aaKnown RBP15.7■□□□□ 0.1
VIM-209ENST00000544301 C6orf201Q7Z4U5 140 aa15.7■□□□□ 0.1
VIM-209ENST00000544301 OR5AP2Q8NGF4 316 aa15.7■□□□□ 0.1
VIM-209ENST00000544301 FGFBP3Q8TAT2 258 aa15.7■□□□□ 0.1
VIM-209ENST00000544301 ZNF845Q96IR2 970 aaPredicted RBP15.7■□□□□ 0.1
VIM-209ENST00000544301 THOC3Q96J01 351 aaKnown RBP15.7■□□□□ 0.1
VIM-209ENST00000544301 Q96M66 194 aa15.7■□□□□ 0.1
VIM-209ENST00000544301 DHRS9Q9BPW9 319 aa15.7■□□□□ 0.1
VIM-209ENST00000544301 WNT5BQ9H1J7 359 aa15.7■□□□□ 0.1
VIM-209ENST00000544301 GPR35Q9HC97 309 aa15.7■□□□□ 0.1
VIM-209ENST00000544301 EHFQ9NZC4 300 aa15.7■□□□□ 0.1
VIM-209ENST00000544301 TIMM10BQ9Y5J6 103 aa15.7■□□□□ 0.1
VIM-209ENST00000544301 HTR3BO95264 441 aa15.7■□□□□ 0.1
VIM-209ENST00000544301 CRHP06850 196 aa15.7■□□□□ 0.1
VIM-209ENST00000544301 GABRR1P24046 479 aa15.7■□□□□ 0.1
VIM-209ENST00000544301 BAMBIQ13145 260 aa15.7■□□□□ 0.1
VIM-209ENST00000544301 PPA1Q15181 289 aa15.7■□□□□ 0.1
VIM-209ENST00000544301 ABHD3Q8WU67 409 aa15.7■□□□□ 0.1
VIM-209ENST00000544301 C17orf50Q8WW18 174 aa15.7■□□□□ 0.1
VIM-209ENST00000544301 CPNE4Q96A23 557 aaPredicted RBP15.7■□□□□ 0.1
VIM-209ENST00000544301 CDC6Q99741 560 aa15.7■□□□□ 0.1
VIM-209ENST00000544301 OR2H1Q9GZK4 316 aa15.7■□□□□ 0.1
VIM-209ENST00000544301 PPA2Q9H2U2 334 aa15.7■□□□□ 0.1
VIM-209ENST00000544301 LRFN1Q9P244 771 aa15.7■□□□□ 0.1
VIM-209ENST00000544301 MCTS1Q9ULC4 181 aaKnown RBP15.7■□□□□ 0.1
VIM-209ENST00000544301 IGKV1-27A0A075B6S5 117 aa15.69■□□□□ 0.1
VIM-209ENST00000544301 PSMB6P28072 239 aa15.69■□□□□ 0.1
VIM-209ENST00000544301 PRSS12P56730 875 aa15.69■□□□□ 0.1
VIM-209ENST00000544301 SUPT4H1P63272 117 aaKnown RBP15.69■□□□□ 0.1
VIM-209ENST00000544301 SLC9A3R2Q15599 337 aa15.69■□□□□ 0.1
VIM-209ENST00000544301 RTL6Q6ICC9 239 aa15.69■□□□□ 0.1
VIM-209ENST00000544301 OVCH2Q7RTZ1 564 aa15.69■□□□□ 0.1
VIM-209ENST00000544301 RELL2Q8NC24 303 aaPredicted RBP15.69■□□□□ 0.1
VIM-209ENST00000544301 NECAB3Q96P71 396 aaPredicted RBP15.69■□□□□ 0.1
VIM-209ENST00000544301 NMES1Q9C002 83 aa15.69■□□□□ 0.1
VIM-209ENST00000544301 METTL9Q9H1A3 318 aa15.69■□□□□ 0.1
VIM-209ENST00000544301 SLC25A32Q9H2D1 315 aa15.69■□□□□ 0.1
VIM-209ENST00000544301 CHMP1AQ9HD42 196 aaPredicted RBP15.69■□□□□ 0.1
VIM-209ENST00000544301 MBD2Q9UBB5 411 aa15.69■□□□□ 0.1
VIM-209ENST00000544301 DOCK10Q96BY6 2186 aa15.69■□□□□ 0.1
VIM-209ENST00000544301 FAM230AA0A1W2PPH8 454 aa15.68■□□□□ 0.1
VIM-209ENST00000544301 FIGNL2A6NMB9 653 aa15.68■□□□□ 0.1
VIM-209ENST00000544301 ANGPTL7O43827 346 aa15.68■□□□□ 0.1
VIM-209ENST00000544301 M6PRP20645 277 aa15.68■□□□□ 0.1
VIM-209ENST00000544301 ZP3P21754 424 aa15.68■□□□□ 0.1
VIM-209ENST00000544301 PRKACBP22694 351 aa15.68■□□□□ 0.1
VIM-209ENST00000544301 LUMP51884 338 aaPredicted RBP15.68■□□□□ 0.1
VIM-209ENST00000544301 CHRFAM7AQ494W8 412 aa15.68■□□□□ 0.1
VIM-209ENST00000544301 LINC00052Q96N35 136 aa15.68■□□□□ 0.1
VIM-209ENST00000544301 PLEKHJ1Q9NW61 149 aa15.68■□□□□ 0.1
VIM-209ENST00000544301 FOXJ2Q9P0K8 574 aa15.68■□□□□ 0.1
VIM-209ENST00000544301 BOKQ9UMX3 212 aaPredicted RBP15.68■□□□□ 0.1
VIM-209ENST00000544301 A0A0B4J2A0 478 aa15.68■□□□□ 0.1
VIM-209ENST00000544301 A8MXK9 166 aa15.68■□□□□ 0.1
VIM-209ENST00000544301 SERPINA5P05154 406 aa15.68■□□□□ 0.1
VIM-209ENST00000544301 GLRA1P23415 457 aa15.68■□□□□ 0.1
VIM-209ENST00000544301 ARPC4P59998 168 aa15.68■□□□□ 0.1
VIM-209ENST00000544301 PCBD1P61457 104 aa15.68■□□□□ 0.1
VIM-209ENST00000544301 CNN3Q15417 329 aaKnown RBP15.68■□□□□ 0.1
VIM-209ENST00000544301 SKA3Q8IX90 412 aa15.68■□□□□ 0.1
VIM-209ENST00000544301 ZBTB44Q8NCP5 570 aa15.68■□□□□ 0.1
VIM-209ENST00000544301 ZNF701Q9NV72 531 aaPredicted RBP15.68■□□□□ 0.1
VIM-209ENST00000544301 RASL12Q9NYN1 266 aa15.68■□□□□ 0.1
VIM-209ENST00000544301 SHPKQ9UHJ6 478 aa15.68■□□□□ 0.1
VIM-209ENST00000544301 SESN1Q9Y6P5 492 aa15.68■□□□□ 0.1
VIM-209ENST00000544301 IGKV1D-8A0A087WSZ0 117 aa15.67■□□□□ 0.1
VIM-209ENST00000544301 A0A1W2PNU3 283 aaPredicted RBP15.67■□□□□ 0.1
VIM-209ENST00000544301 LNP1A1A4G5 178 aa15.67■□□□□ 0.1
VIM-209ENST00000544301 TEX46H3BTG2 121 aa15.67■□□□□ 0.1
VIM-209ENST00000544301 SPRY1O43609 319 aaPredicted RBP15.67■□□□□ 0.1
VIM-209ENST00000544301 RSU1Q15404 277 aa15.67■□□□□ 0.1
VIM-209ENST00000544301 ANKRD55Q3KP44 614 aa15.67■□□□□ 0.1
VIM-209ENST00000544301 NKAPLQ5M9Q1 402 aa15.67■□□□□ 0.1
VIM-209ENST00000544301 TMEM42Q69YG0 159 aa15.67■□□□□ 0.1
VIM-209ENST00000544301 INO80EQ8NBZ0 244 aaPredicted RBP15.67■□□□□ 0.1
VIM-209ENST00000544301 EMG1Q92979 244 aaKnown RBP15.67■□□□□ 0.1
VIM-209ENST00000544301 ZNF75AQ96N20 296 aa15.67■□□□□ 0.1
VIM-209ENST00000544301 ZNF471Q9BX82 626 aaPredicted RBP15.67■□□□□ 0.1
VIM-209ENST00000544301 RAB18Q9NP72 206 aa15.67■□□□□ 0.1
VIM-209ENST00000544301 PRR13Q9NZ81 148 aa15.67■□□□□ 0.1
VIM-209ENST00000544301 NEURL1O76050 574 aa15.67■□□□□ 0.1
VIM-209ENST00000544301 FGF2P09038 288 aa15.67■□□□□ 0.1
VIM-209ENST00000544301 CYCSP99999 105 aaKnown RBP15.67■□□□□ 0.1
VIM-209ENST00000544301 PDSS1Q5T2R2 415 aa15.67■□□□□ 0.1
VIM-209ENST00000544301 NSUN5P2Q63ZY6 315 aa15.67■□□□□ 0.1
VIM-209ENST00000544301 RPUSD3Q6P087 351 aaKnown RBP15.67■□□□□ 0.1
VIM-209ENST00000544301 PLXDC2Q6UX71 529 aa15.67■□□□□ 0.1
VIM-209ENST00000544301 OR2M7Q8NG81 312 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms