RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 TGM4P49221 684 aa13.16□□□□□ -0.3
RPAIN-206ENST00000539417 GNG3P63215 75 aa13.16□□□□□ -0.3
RPAIN-206ENST00000539417 LCN2P80188 198 aa13.16□□□□□ -0.3
RPAIN-206ENST00000539417 MZT1Q08AG7 82 aa13.16□□□□□ -0.3
RPAIN-206ENST00000539417 CDK5R1Q15078 307 aa13.16□□□□□ -0.3
RPAIN-206ENST00000539417 HAGHLQ6PII5 290 aaPredicted RBP13.16□□□□□ -0.3
RPAIN-206ENST00000539417 TMPRSS11AQ6ZMR5 421 aa13.16□□□□□ -0.3
RPAIN-206ENST00000539417 ANGPTL5Q86XS5 388 aa13.16□□□□□ -0.3
RPAIN-206ENST00000539417 CALHM1Q8IU99 346 aa13.16□□□□□ -0.3
RPAIN-206ENST00000539417 BATF2Q8N1L9 274 aa13.16□□□□□ -0.3
RPAIN-206ENST00000539417 FGFRL1Q8N441 504 aa13.16□□□□□ -0.3
RPAIN-206ENST00000539417 OR52N1Q8NH53 320 aa13.16□□□□□ -0.3
RPAIN-206ENST00000539417 PLEKHA1Q9HB21 404 aa13.16□□□□□ -0.3
RPAIN-206ENST00000539417 BABAM2Q9NXR7 383 aa13.16□□□□□ -0.3
RPAIN-206ENST00000539417 CTSZQ9UBR2 303 aa13.16□□□□□ -0.3
RPAIN-206ENST00000539417 HHLA2Q9UM44 414 aa13.16□□□□□ -0.3
RPAIN-206ENST00000539417 PCDHB10Q9UN67 800 aa13.16□□□□□ -0.3
RPAIN-206ENST00000539417 FAM230AA0A1W2PPH8 454 aa13.15□□□□□ -0.3
RPAIN-206ENST00000539417 OOEPA6NGQ2 149 aa13.15□□□□□ -0.3
RPAIN-206ENST00000539417 KIAA1324LA8MWY0 1029 aaPredicted RBP13.15□□□□□ -0.3
RPAIN-206ENST00000539417 OGG1O15527 345 aa13.15□□□□□ -0.3
RPAIN-206ENST00000539417 AMY2BP19961 511 aa13.15□□□□□ -0.3
RPAIN-206ENST00000539417 SLC35A2P78381 396 aa13.15□□□□□ -0.3
RPAIN-206ENST00000539417 ASPHD2Q6ICH7 369 aa13.15□□□□□ -0.3
RPAIN-206ENST00000539417 FAM166AQ6J272 317 aa13.15□□□□□ -0.3
RPAIN-206ENST00000539417 EGFL6Q8IUX8 553 aa13.15□□□□□ -0.3
RPAIN-206ENST00000539417 SPICQ8N5J4 248 aa13.15□□□□□ -0.3
RPAIN-206ENST00000539417 OR13C5Q8NGS8 318 aa13.15□□□□□ -0.3
RPAIN-206ENST00000539417 OR5AK2Q8NH90 309 aa13.15□□□□□ -0.3
RPAIN-206ENST00000539417 AQP3Q92482 292 aa13.15□□□□□ -0.3
RPAIN-206ENST00000539417 ITFG2Q969R8 447 aa13.15□□□□□ -0.3
RPAIN-206ENST00000539417 RAB39BQ96DA2 213 aa13.15□□□□□ -0.3
RPAIN-206ENST00000539417 CHST5Q9GZS9 411 aa13.15□□□□□ -0.3
RPAIN-206ENST00000539417 SNTG1Q9NSN8 517 aa13.15□□□□□ -0.3
RPAIN-206ENST00000539417 HIF1ANQ9NWT6 349 aa13.15□□□□□ -0.3
RPAIN-206ENST00000539417 PNMA8CA0A1B0GUJ8 204 aa13.14□□□□□ -0.31
RPAIN-206ENST00000539417 OR5B21A6NL26 309 aa13.14□□□□□ -0.31
RPAIN-206ENST00000539417 SRRM5B3KS81 715 aa13.14□□□□□ -0.31
RPAIN-206ENST00000539417 FSTL3O95633 263 aa13.14□□□□□ -0.31
RPAIN-206ENST00000539417 CFHR2P36980 270 aa13.14□□□□□ -0.31
RPAIN-206ENST00000539417 HSPA13P48723 471 aa13.14□□□□□ -0.31
RPAIN-206ENST00000539417 TEX36Q5VZQ5 186 aa13.14□□□□□ -0.31
RPAIN-206ENST00000539417 RPL22L1Q6P5R6 122 aaKnown RBP13.14□□□□□ -0.31
RPAIN-206ENST00000539417 CRIP3Q6Q6R5 217 aa13.14□□□□□ -0.31
RPAIN-206ENST00000539417 ZNF841Q6ZN19 808 aa13.14□□□□□ -0.31
RPAIN-206ENST00000539417 MUC20Q8N307 709 aaPredicted RBP13.14□□□□□ -0.31
RPAIN-206ENST00000539417 NANOGP1Q8N7R0 232 aa13.14□□□□□ -0.31
RPAIN-206ENST00000539417 OR5T2Q8NGG2 359 aa13.14□□□□□ -0.31
RPAIN-206ENST00000539417 OR13C3Q8NGS6 347 aa13.14□□□□□ -0.31
RPAIN-206ENST00000539417 TMEM186Q96B77 213 aa13.14□□□□□ -0.31
RPAIN-206ENST00000539417 MMP26Q9NRE1 261 aa13.14□□□□□ -0.31
RPAIN-206ENST00000539417 RAB26Q9ULW5 256 aa13.14□□□□□ -0.31
RPAIN-206ENST00000539417 TMEM212A6NML5 194 aa13.13□□□□□ -0.31
RPAIN-206ENST00000539417 TRAPPC2LH3BP13 241 aa13.13□□□□□ -0.31
RPAIN-206ENST00000539417 AVPP01185 164 aa13.13□□□□□ -0.31
RPAIN-206ENST00000539417 CCDC159P0C7I6 412 aa13.13□□□□□ -0.31
RPAIN-206ENST00000539417 RPS2P15880 293 aaKnown RBP13.13□□□□□ -0.31
RPAIN-206ENST00000539417 CRHBPP24387 322 aa13.13□□□□□ -0.31
RPAIN-206ENST00000539417 HAAOP46952 286 aa13.13□□□□□ -0.31
RPAIN-206ENST00000539417 SOX2P48431 317 aa13.13□□□□□ -0.31
RPAIN-206ENST00000539417 DVL1P1P54792 670 aaPredicted RBP13.13□□□□□ -0.31
RPAIN-206ENST00000539417 MRPL28Q13084 256 aaKnown RBP13.13□□□□□ -0.31
RPAIN-206ENST00000539417 IRF3Q14653 427 aa13.13□□□□□ -0.31
RPAIN-206ENST00000539417 CR1LQ2VPA4 569 aa13.13□□□□□ -0.31
RPAIN-206ENST00000539417 DMKNQ6E0U4 476 aaPredicted RBP13.13□□□□□ -0.31
RPAIN-206ENST00000539417 CCDC54Q8NEL0 328 aa13.13□□□□□ -0.31
RPAIN-206ENST00000539417 OR51F2Q8NH61 342 aa13.13□□□□□ -0.31
RPAIN-206ENST00000539417 ORAI1Q96D31 301 aa13.13□□□□□ -0.31
RPAIN-206ENST00000539417 OR5M11Q96RB7 305 aa13.13□□□□□ -0.31
RPAIN-206ENST00000539417 DUSP21Q9H596 190 aa13.13□□□□□ -0.31
RPAIN-206ENST00000539417 SMURF1Q9HCE7 757 aa13.13□□□□□ -0.31
RPAIN-206ENST00000539417 CHCHD3Q9NX63 227 aaKnown RBP13.13□□□□□ -0.31
RPAIN-206ENST00000539417 KCNS2Q9ULS6 477 aa13.13□□□□□ -0.31
RPAIN-206ENST00000539417 MXRA5Q9NR99 2828 aa13.12□□□□□ -0.31
RPAIN-206ENST00000539417 F8VVB4 439 aa13.12□□□□□ -0.31
RPAIN-206ENST00000539417 F8VWA3 439 aa13.12□□□□□ -0.31
RPAIN-206ENST00000539417 PLATP00750 562 aa13.12□□□□□ -0.31
RPAIN-206ENST00000539417 MT-ND2P03891 347 aa13.12□□□□□ -0.31
RPAIN-206ENST00000539417 SELLP14151 372 aa13.12□□□□□ -0.31
RPAIN-206ENST00000539417 ZNF20P17024 532 aa13.12□□□□□ -0.31
RPAIN-206ENST00000539417 ATF1P18846 271 aa13.12□□□□□ -0.31
RPAIN-206ENST00000539417 CCDC58Q4VC31 144 aa13.12□□□□□ -0.31
RPAIN-206ENST00000539417 FAM120AOSQ5T036 256 aa13.12□□□□□ -0.31
RPAIN-206ENST00000539417 DCDC5Q6ZRR9 648 aa13.12□□□□□ -0.31
RPAIN-206ENST00000539417 C1orf229Q6ZS94 237 aaPredicted RBP13.12□□□□□ -0.31
RPAIN-206ENST00000539417 OR13C9Q8NGT0 318 aa13.12□□□□□ -0.31
RPAIN-206ENST00000539417 OR10Z1Q8NGY1 313 aa13.12□□□□□ -0.31
RPAIN-206ENST00000539417 PGLYRP3Q96LB9 341 aa13.12□□□□□ -0.31
RPAIN-206ENST00000539417 SPACA5Q96QH8 159 aa13.12□□□□□ -0.31
RPAIN-206ENST00000539417 MYCBPQ99417 103 aaPredicted RBP13.12□□□□□ -0.31
RPAIN-206ENST00000539417 CCL13Q99616 98 aa13.12□□□□□ -0.31
RPAIN-206ENST00000539417 ZNF184Q99676 751 aaPredicted RBP13.12□□□□□ -0.31
RPAIN-206ENST00000539417 COMMD4Q9H0A8 199 aa13.12□□□□□ -0.31
RPAIN-206ENST00000539417 SCN3BQ9NY72 215 aa13.12□□□□□ -0.31
RPAIN-206ENST00000539417 LSM2Q9Y333 95 aaKnown RBP13.12□□□□□ -0.31
RPAIN-206ENST00000539417 TRAV38-1A0A0B4J264 116 aa13.11□□□□□ -0.31
RPAIN-206ENST00000539417 J3QT63 122 aa13.11□□□□□ -0.31
RPAIN-206ENST00000539417 ADAM20O43506 726 aa13.11□□□□□ -0.31
RPAIN-206ENST00000539417 CRLF1O75462 422 aa13.11□□□□□ -0.31
RPAIN-206ENST00000539417 INMTO95050 263 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms