RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 AADACL3Q5VUY0 350 aa11.51□□□□□ -0.57
LDLR-203ENST00000535915 ATRAIDQ6UW56 229 aa11.51□□□□□ -0.57
LDLR-203ENST00000535915 PEG10Q86TG7 708 aaKnown RBP11.51□□□□□ -0.57
LDLR-203ENST00000535915 YRDCQ86U90 279 aaKnown RBP11.51□□□□□ -0.57
LDLR-203ENST00000535915 LHFPL1Q86WI0 220 aa11.51□□□□□ -0.57
LDLR-203ENST00000535915 C20orf196Q8IYI0 205 aa11.51□□□□□ -0.57
LDLR-203ENST00000535915 ROBO4Q8WZ75 1007 aa11.51□□□□□ -0.57
LDLR-203ENST00000535915 BARX1Q9HBU1 254 aaPredicted RBP11.51□□□□□ -0.57
LDLR-203ENST00000535915 SERPINE3A8MV23 424 aa11.5□□□□□ -0.57
LDLR-203ENST00000535915 PDGFBP01127 241 aaPredicted RBP11.5□□□□□ -0.57
LDLR-203ENST00000535915 GLRA1P23415 457 aa11.5□□□□□ -0.57
LDLR-203ENST00000535915 SUCLG1P53597 346 aaKnown RBP11.5□□□□□ -0.57
LDLR-203ENST00000535915 SUPT4H1P63272 117 aaKnown RBP11.5□□□□□ -0.57
LDLR-203ENST00000535915 MRPS34P82930 218 aaKnown RBP11.5□□□□□ -0.57
LDLR-203ENST00000535915 SLC16A14Q7RTX9 510 aa11.5□□□□□ -0.57
LDLR-203ENST00000535915 GALNTL5Q7Z4T8 443 aa11.5□□□□□ -0.57
LDLR-203ENST00000535915 OR5AP2Q8NGF4 316 aa11.5□□□□□ -0.57
LDLR-203ENST00000535915 OR2AE1Q8NHA4 323 aa11.5□□□□□ -0.57
LDLR-203ENST00000535915 OR14L1PQ8NHC6 308 aa11.5□□□□□ -0.57
LDLR-203ENST00000535915 SGK3Q96BR1 496 aa11.5□□□□□ -0.57
LDLR-203ENST00000535915 NECAB3Q96P71 396 aaPredicted RBP11.5□□□□□ -0.57
LDLR-203ENST00000535915 DNTTIP1Q9H147 329 aa11.5□□□□□ -0.57
LDLR-203ENST00000535915 METTL8Q9H825 291 aaKnown RBP11.5□□□□□ -0.57
LDLR-203ENST00000535915 RAB18Q9NP72 206 aa11.5□□□□□ -0.57
LDLR-203ENST00000535915 GPR173Q9NS66 373 aa11.5□□□□□ -0.57
LDLR-203ENST00000535915 A0A0G2JMM0 328 aa11.5□□□□□ -0.57
LDLR-203ENST00000535915 A0A1W2PPB8 328 aa11.5□□□□□ -0.57
LDLR-203ENST00000535915 A0A1W2PRS3 328 aa11.5□□□□□ -0.57
LDLR-203ENST00000535915 KIR3DP1A8MWS1 328 aa11.5□□□□□ -0.57
LDLR-203ENST00000535915 SGCEO43556 437 aa11.5□□□□□ -0.57
LDLR-203ENST00000535915 GP1BAP07359 652 aa11.5□□□□□ -0.57
LDLR-203ENST00000535915 PPIAP62937 165 aaKnown RBP11.5□□□□□ -0.57
LDLR-203ENST00000535915 Q7L0L9 218 aa11.5□□□□□ -0.57
LDLR-203ENST00000535915 C6orf201Q7Z4U5 140 aa11.5□□□□□ -0.57
LDLR-203ENST00000535915 NTNG2Q96CW9 530 aa11.5□□□□□ -0.57
LDLR-203ENST00000535915 C10orf35Q96D05 121 aa11.5□□□□□ -0.57
LDLR-203ENST00000535915 RNF126Q9BV68 326 aa11.5□□□□□ -0.57
LDLR-203ENST00000535915 TM2D1Q9BX74 207 aa11.5□□□□□ -0.57
LDLR-203ENST00000535915 MLXQ9UH92 298 aa11.5□□□□□ -0.57
LDLR-203ENST00000535915 OSGIN2Q9Y236 505 aa11.5□□□□□ -0.57
LDLR-203ENST00000535915 MPTX1A8MV57 137 aa11.5□□□□□ -0.57
LDLR-203ENST00000535915 H7C2Y5 167 aa11.5□□□□□ -0.57
LDLR-203ENST00000535915 CER1O95813 267 aa11.5□□□□□ -0.57
LDLR-203ENST00000535915 P04436 131 aa11.5□□□□□ -0.57
LDLR-203ENST00000535915 TMEM225BP0DP42 221 aa11.5□□□□□ -0.57
LDLR-203ENST00000535915 MTCP1P56278 107 aa11.5□□□□□ -0.57
LDLR-203ENST00000535915 RAC3P60763 192 aa11.5□□□□□ -0.57
LDLR-203ENST00000535915 RPS18P62269 152 aaKnown RBP11.5□□□□□ -0.57
LDLR-203ENST00000535915 DEFA5Q01523 94 aa11.5□□□□□ -0.57
LDLR-203ENST00000535915 ANKRD55Q3KP44 614 aa11.5□□□□□ -0.57
LDLR-203ENST00000535915 NKAPLQ5M9Q1 402 aa11.5□□□□□ -0.57
LDLR-203ENST00000535915 SEMA6DQ8NFY4 1073 aa11.5□□□□□ -0.57
LDLR-203ENST00000535915 CRLF2Q9HC73 371 aa11.5□□□□□ -0.57
LDLR-203ENST00000535915 PLEKHJ1Q9NW61 149 aa11.5□□□□□ -0.57
LDLR-203ENST00000535915 OTX2P32243 289 aa11.49□□□□□ -0.57
LDLR-203ENST00000535915 CARD18P57730 90 aa11.49□□□□□ -0.57
LDLR-203ENST00000535915 CHAF1BQ13112 559 aa11.49□□□□□ -0.57
LDLR-203ENST00000535915 ARL6IP1Q15041 203 aa11.49□□□□□ -0.57
LDLR-203ENST00000535915 TRIM61Q5EBN2 209 aa11.49□□□□□ -0.57
LDLR-203ENST00000535915 Q6ZSR3 168 aa11.49□□□□□ -0.57
LDLR-203ENST00000535915 BOLLQ8N9W6 283 aaKnown RBP11.49□□□□□ -0.57
LDLR-203ENST00000535915 OR5T2Q8NGG2 359 aa11.49□□□□□ -0.57
LDLR-203ENST00000535915 PIK3IP1Q96FE7 263 aa11.49□□□□□ -0.57
LDLR-203ENST00000535915 SGCZQ96LD1 299 aa11.49□□□□□ -0.57
LDLR-203ENST00000535915 SF3B5Q9BWJ5 86 aaKnown RBP11.49□□□□□ -0.57
LDLR-203ENST00000535915 DOCK10Q96BY6 2186 aa11.49□□□□□ -0.57
LDLR-203ENST00000535915 A0A0B4J2A0 478 aa11.49□□□□□ -0.57
LDLR-203ENST00000535915 TEX13DA0A0J9YY54 714 aaPredicted RBP11.49□□□□□ -0.57
LDLR-203ENST00000535915 DNASE2O00115 360 aaPredicted RBP11.49□□□□□ -0.57
LDLR-203ENST00000535915 KNG1P01042 644 aa11.49□□□□□ -0.57
LDLR-203ENST00000535915 SERPINA5P05154 406 aa11.49□□□□□ -0.57
LDLR-203ENST00000535915 SRD5A2P31213 254 aa11.49□□□□□ -0.57
LDLR-203ENST00000535915 B3GALT5-AS1P59052 145 aa11.49□□□□□ -0.57
LDLR-203ENST00000535915 RAB35Q15286 201 aa11.49□□□□□ -0.57
LDLR-203ENST00000535915 ZNF774Q6NX45 483 aa11.49□□□□□ -0.57
LDLR-203ENST00000535915 ZSCAN4Q8NAM6 433 aaPredicted RBP11.49□□□□□ -0.57
LDLR-203ENST00000535915 CCDC54Q8NEL0 328 aa11.49□□□□□ -0.57
LDLR-203ENST00000535915 SLC39A7Q92504 469 aa11.49□□□□□ -0.57
LDLR-203ENST00000535915 RRNAD1Q96FB5 475 aaKnown RBP11.49□□□□□ -0.57
LDLR-203ENST00000535915 REEP6Q96HR9 211 aa11.49□□□□□ -0.57
LDLR-203ENST00000535915 CDX2Q99626 313 aaPredicted RBP11.49□□□□□ -0.57
LDLR-203ENST00000535915 SHPKQ9UHJ6 478 aa11.49□□□□□ -0.57
LDLR-203ENST00000535915 CCDC187A0A096LP49 1063 aa11.48□□□□□ -0.57
LDLR-203ENST00000535915 TRBV6-7A0A0A0MS04 114 aa11.48□□□□□ -0.57
LDLR-203ENST00000535915 FAM230AA0A1W2PPH8 454 aa11.48□□□□□ -0.57
LDLR-203ENST00000535915 H0YIZ8 118 aa11.48□□□□□ -0.57
LDLR-203ENST00000535915 ABCD4O14678 606 aa11.48□□□□□ -0.57
LDLR-203ENST00000535915 TPT1P13693 172 aaKnown RBP11.48□□□□□ -0.57
LDLR-203ENST00000535915 ACKR3P25106 362 aa11.48□□□□□ -0.57
LDLR-203ENST00000535915 PRSS12P56730 875 aa11.48□□□□□ -0.57
LDLR-203ENST00000535915 FAM209BQ5JX69 171 aa11.48□□□□□ -0.57
LDLR-203ENST00000535915 DRAM2Q6UX65 266 aa11.48□□□□□ -0.57
LDLR-203ENST00000535915 GPR137CQ8N3F9 429 aa11.48□□□□□ -0.57
LDLR-203ENST00000535915 ALKBH3Q96Q83 286 aaPredicted RBP11.48□□□□□ -0.57
LDLR-203ENST00000535915 MCTS1Q9ULC4 181 aaKnown RBP11.48□□□□□ -0.57
LDLR-203ENST00000535915 ARID1AO14497 2285 aa11.48□□□□□ -0.57
LDLR-203ENST00000535915 SIGLEC5O15389 551 aa11.48□□□□□ -0.57
LDLR-203ENST00000535915 LAMTOR5O43504 91 aa11.48□□□□□ -0.57
LDLR-203ENST00000535915 DNPH1O43598 174 aa11.48□□□□□ -0.57
LDLR-203ENST00000535915 SPRY1O43609 319 aaPredicted RBP11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms