RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 HBE1P02100 147 aa1.88□□□□□ -2.11
CD44-233ENST00000531141 IL9P15248 144 aa1.88□□□□□ -2.11
CD44-233ENST00000531141 CSNK2A2P19784 350 aaPredicted RBP1.88□□□□□ -2.11
CD44-233ENST00000531141 BCKDHBP21953 392 aa1.88□□□□□ -2.11
CD44-233ENST00000531141 STOMP27105 288 aa1.88□□□□□ -2.11
CD44-233ENST00000531141 PSMB5P28074 263 aa1.88□□□□□ -2.11
CD44-233ENST00000531141 GTF2E2P29084 291 aaKnown RBP1.88□□□□□ -2.11
CD44-233ENST00000531141 PFN2P35080 140 aa1.88□□□□□ -2.11
CD44-233ENST00000531141 CCNG1P51959 295 aa1.88□□□□□ -2.11
CD44-233ENST00000531141 RPS15P62841 145 aaKnown RBP1.88□□□□□ -2.11
CD44-233ENST00000531141 FLI1Q01543 452 aaPredicted RBP1.88□□□□□ -2.11
CD44-233ENST00000531141 SIGLEC14Q08ET2 396 aa1.88□□□□□ -2.11
CD44-233ENST00000531141 PNOCQ13519 176 aa1.88□□□□□ -2.11
CD44-233ENST00000531141 ALKBH6Q3KRA9 238 aa1.88□□□□□ -2.11
CD44-233ENST00000531141 YIF1BQ5BJH7 314 aa1.88□□□□□ -2.11
CD44-233ENST00000531141 CCDC183Q5T5S1 534 aa1.88□□□□□ -2.11
CD44-233ENST00000531141 FAM222AQ5U5X8 452 aa1.88□□□□□ -2.11
CD44-233ENST00000531141 METAP1DQ6UB28 335 aaPredicted RBP1.88□□□□□ -2.11
CD44-233ENST00000531141 RTL4Q6ZR62 310 aa1.88□□□□□ -2.11
CD44-233ENST00000531141 ZNF101Q8IZC7 436 aa1.88□□□□□ -2.11
CD44-233ENST00000531141 C19orf18Q8NEA5 215 aa1.88□□□□□ -2.11
CD44-233ENST00000531141 NRGNQ92686 78 aa1.88□□□□□ -2.11
CD44-233ENST00000531141 ZYG11BQ9C0D3 744 aa1.88□□□□□ -2.11
CD44-233ENST00000531141 FAM192AQ9GZU8 254 aa1.88□□□□□ -2.11
CD44-233ENST00000531141 ZSCAN16Q9H4T2 348 aaPredicted RBP1.88□□□□□ -2.11
CD44-233ENST00000531141 SLC17A7Q9P2U7 560 aa1.88□□□□□ -2.11
CD44-233ENST00000531141 ANKRD17O75179 2603 aaKnown RBP1.88□□□□□ -2.11
CD44-233ENST00000531141 RIC1Q4ADV7 1423 aa1.88□□□□□ -2.11
CD44-233ENST00000531141 SHROOM3Q8TF72 1996 aa1.88□□□□□ -2.11
CD44-233ENST00000531141 KALRNO60229 2985 aa1.88□□□□□ -2.11
CD44-233ENST00000531141 CEP250Q9BV73 2442 aa1.88□□□□□ -2.11
CD44-233ENST00000531141 PLXNA3P51805 1871 aa1.88□□□□□ -2.11
CD44-233ENST00000531141 PLXNA1Q9UIW2 1896 aa1.88□□□□□ -2.11
CD44-233ENST00000531141 TECTAO75443 2155 aa1.88□□□□□ -2.11
CD44-233ENST00000531141 SMG1Q96Q15 3661 aaKnown RBP1.87□□□□□ -2.11
CD44-233ENST00000531141 ITPR3Q14573 2671 aa1.87□□□□□ -2.11
CD44-233ENST00000531141 A0A1W2PP64 1363 aa1.87□□□□□ -2.11
CD44-233ENST00000531141 SCN7AQ01118 1682 aa1.87□□□□□ -2.11
CD44-233ENST00000531141 ZSWIM8A7E2V4 1837 aa1.87□□□□□ -2.11
CD44-233ENST00000531141 ZNF98A6NK75 572 aa1.87□□□□□ -2.11
CD44-233ENST00000531141 LRRC37A2A6NM11 1700 aa1.87□□□□□ -2.11
CD44-233ENST00000531141 TNFRSF11BO00300 401 aa1.87□□□□□ -2.11
CD44-233ENST00000531141 GABRPO00591 440 aa1.87□□□□□ -2.11
CD44-233ENST00000531141 POLR1CO15160 346 aaPredicted RBP1.87□□□□□ -2.11
CD44-233ENST00000531141 PLIN3O60664 434 aa1.87□□□□□ -2.11
CD44-233ENST00000531141 LSM8O95777 96 aaKnown RBP1.87□□□□□ -2.11
CD44-233ENST00000531141 HTR1DP28221 377 aa1.87□□□□□ -2.11
CD44-233ENST00000531141 C21orf59P57076 290 aa1.87□□□□□ -2.11
CD44-233ENST00000531141 ZNF121P58317 390 aaPredicted RBP1.87□□□□□ -2.11
CD44-233ENST00000531141 FUT5Q11128 374 aa1.87□□□□□ -2.11
CD44-233ENST00000531141 DGCR6Q14129 220 aa1.87□□□□□ -2.11
CD44-233ENST00000531141 ZNF266Q14584 549 aa1.87□□□□□ -2.11
CD44-233ENST00000531141 CASP12Q6UXS9 341 aa1.87□□□□□ -2.11
CD44-233ENST00000531141 JAGN1Q8N5M9 183 aa1.87□□□□□ -2.11
CD44-233ENST00000531141 SNX31Q8N9S9 440 aa1.87□□□□□ -2.11
CD44-233ENST00000531141 GPR26Q8NDV2 337 aa1.87□□□□□ -2.11
CD44-233ENST00000531141 OR5T1Q8NG75 326 aa1.87□□□□□ -2.11
CD44-233ENST00000531141 OR4M1Q8NGD0 313 aa1.87□□□□□ -2.11
CD44-233ENST00000531141 FAM81AQ8TBF8 368 aa1.87□□□□□ -2.11
CD44-233ENST00000531141 KLF14Q8TD94 323 aaPredicted RBP1.87□□□□□ -2.11
CD44-233ENST00000531141 RNF145Q96MT1 663 aa1.87□□□□□ -2.11
CD44-233ENST00000531141 IP6K3Q96PC2 410 aa1.87□□□□□ -2.11
CD44-233ENST00000531141 ZNF317Q96PQ6 595 aaPredicted RBP1.87□□□□□ -2.11
CD44-233ENST00000531141 ANP32EQ9BTT0 268 aa1.87□□□□□ -2.11
CD44-233ENST00000531141 RABL2BQ9UNT1 228 aa1.87□□□□□ -2.11
CD44-233ENST00000531141 RRP15Q9Y3B9 282 aaKnown RBP1.87□□□□□ -2.11
CD44-233ENST00000531141 SAR1BQ9Y6B6 198 aa1.87□□□□□ -2.11
CD44-233ENST00000531141 DSPP15924 2871 aaKnown RBP1.87□□□□□ -2.11
CD44-233ENST00000531141 TEX15Q9BXT5 2789 aa1.87□□□□□ -2.11
CD44-233ENST00000531141 RTL9Q8NET4 1388 aa1.86□□□□□ -2.11
CD44-233ENST00000531141 DOCK3Q8IZD9 2030 aa1.86□□□□□ -2.11
CD44-233ENST00000531141 DDX60LQ5H9U9 1706 aaKnown RBP1.86□□□□□ -2.11
CD44-233ENST00000531141 SMIM26A0A096LP01 95 aa1.86□□□□□ -2.11
CD44-233ENST00000531141 KBTBD11-OT1A0A1B0GTJ5 212 aa1.86□□□□□ -2.11
CD44-233ENST00000531141 M0R3G1 203 aa1.86□□□□□ -2.11
CD44-233ENST00000531141 CDH16O75309 829 aa1.86□□□□□ -2.11
CD44-233ENST00000531141 ERLIN1O75477 346 aa1.86□□□□□ -2.11
CD44-233ENST00000531141 GLAP06280 429 aa1.86□□□□□ -2.11
CD44-233ENST00000531141 HMOX2P30519 316 aa1.86□□□□□ -2.11
CD44-233ENST00000531141 TNFSF9P41273 254 aa1.86□□□□□ -2.11
CD44-233ENST00000531141 TAS2R46P59540 309 aa1.86□□□□□ -2.11
CD44-233ENST00000531141 CYP24A1Q07973 514 aa1.86□□□□□ -2.11
CD44-233ENST00000531141 NCF4Q15080 339 aa1.86□□□□□ -2.11
CD44-233ENST00000531141 C12orf54Q6X4T0 127 aa1.86□□□□□ -2.11
CD44-233ENST00000531141 SSX9Q7RTT3 188 aa1.86□□□□□ -2.11
CD44-233ENST00000531141 HORMAD1Q86X24 394 aa1.86□□□□□ -2.11
CD44-233ENST00000531141 ERO1BQ86YB8 467 aa1.86□□□□□ -2.11
CD44-233ENST00000531141 GABRG1Q8N1C3 465 aa1.86□□□□□ -2.11
CD44-233ENST00000531141 SLC35G3Q8N808 338 aa1.86□□□□□ -2.11
CD44-233ENST00000531141 BPIFCQ8NFQ6 507 aa1.86□□□□□ -2.11
CD44-233ENST00000531141 OR5M1Q8NGP8 315 aa1.86□□□□□ -2.11
CD44-233ENST00000531141 HAUS1Q96CS2 278 aa1.86□□□□□ -2.11
CD44-233ENST00000531141 UCK2Q9BZX2 261 aa1.86□□□□□ -2.11
CD44-233ENST00000531141 SLIRPQ9GZT3 109 aaKnown RBP1.86□□□□□ -2.11
CD44-233ENST00000531141 GEMIN7Q9H840 131 aaKnown RBP1.86□□□□□ -2.11
CD44-233ENST00000531141 RGS18Q9NS28 235 aa1.86□□□□□ -2.11
CD44-233ENST00000531141 CLN8Q9UBY8 286 aa1.86□□□□□ -2.11
CD44-233ENST00000531141 HES2Q9Y543 173 aa1.86□□□□□ -2.11
CD44-233ENST00000531141 BRWD1Q9NSI6 2320 aa1.86□□□□□ -2.11
CD44-233ENST00000531141 COL1A1P02452 1464 aaPredicted RBP1.86□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms