RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 LINC00470Q9BZP3 86 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 RAB1BQ9H0U4 201 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 IKZF5Q9H5V7 419 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 NANOGQ9H9S0 305 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 GNB4Q9HAV0 340 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 CRLF2Q9HC73 371 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 CCNB1IP1Q9NPC3 277 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 MED4Q9NPJ6 270 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 MED29Q9NX70 200 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 MRPL39Q9NYK5 338 aaKnown RBP2.95□□□□□ -1.94
NUP54-212ENST00000513248 ADA2Q9NZK5 511 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 SEC14L4Q9UDX3 406 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 AP3M1Q9Y2T2 418 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 MOB4Q9Y3A3 225 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 MED31Q9Y3C7 131 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 FAM32AQ9Y421 112 aaKnown RBP2.95□□□□□ -1.94
NUP54-212ENST00000513248 BOD1L1Q8NFC6 3051 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 HIVEP3Q5T1R4 2406 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 KIAA1549Q9HCM3 1950 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 HIVEP1P15822 2718 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 RP1L1Q8IWN7 2480 aaPredicted RBP2.94□□□□□ -1.94
NUP54-212ENST00000513248 HCFC1P51610 2035 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 ARPC4-TTLL3A0A0A6YYG9 625 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 A0A0B4J2E0 115 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 IGHV1-18A0A0C4DH31 117 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 IQCMA0A1B0GVH7 501 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 A0A1B0GX12 115 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 ZNF99A8MXY4 864 aaPredicted RBP2.94□□□□□ -1.94
NUP54-212ENST00000513248 FAM220BPB1ANY3 271 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 SHISA9B4DS77 424 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 E5RGE8 158 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 LRRN3E7EW58 273 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 hCG_2039718K7EN88 272 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 PLPP3O14495 311 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 NDUFAB1O14561 156 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 TNFSF12O43508 249 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 FMO6PO60774 539 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 NPIPB7O75200 414 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 OR7A10O76100 309 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 UBL3O95164 117 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 STAMBPO95630 424 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 MT-ATP6P00846 226 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 PTHP01270 115 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 IGHG1P01857 330 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 HLA-HP01893 362 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 BGLAPP02818 100 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 IFNW1P05000 195 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 CSF3P09919 207 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 OR4A8P0C604 315 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 CECR9P0C854 216 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 NR2C1P13056 603 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 COX4I1P13073 169 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 B4GALT1P15291 398 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 CBR1P16152 277 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 FUT1P19526 365 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 NPR2P20594 1047 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 CCNOP22674 350 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 GATA2P23769 480 aaPredicted RBP2.94□□□□□ -1.94
NUP54-212ENST00000513248 GPR183P32249 361 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 APLNRP35414 380 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 RPL4P36578 427 aaKnown RBP2.94□□□□□ -1.94
NUP54-212ENST00000513248 MDH1P40925 334 aaKnown RBP2.94□□□□□ -1.94
NUP54-212ENST00000513248 YAP1P46937 504 aaKnown RBP2.94□□□□□ -1.94
NUP54-212ENST00000513248 OR1E2P47887 323 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 NPBWR1P48145 328 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 NUDT2P50583 147 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 DAP3P51398 398 aaKnown RBP2.94□□□□□ -1.94
NUP54-212ENST00000513248 RPS23P62266 143 aaKnown RBP2.94□□□□□ -1.94
NUP54-212ENST00000513248 BTG1P62324 171 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 MYBPC1Q00872 1141 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 NAAAQ02083 359 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 DHODHQ02127 395 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 ST3GAL3Q11203 375 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 GTF3C1Q12789 2109 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 SNTB2Q13425 540 aaKnown RBP2.94□□□□□ -1.94
NUP54-212ENST00000513248 GGTLC2Q14390 218 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 SGCAQ16586 387 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 PGGHGQ32M88 737 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 SLC36A2Q495M3 483 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 IFI44LQ53G44 452 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 CYBRD1Q53TN4 286 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 C1QTNF12Q5T7M4 302 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 AP1ARQ63HQ0 302 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 C6orf89Q6UWU4 347 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 DLEU7Q6UYE1 221 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 ZNF730Q6ZMV8 503 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 Q6ZVQ6 151 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 SLC35D2Q76EJ3 337 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 MDP1Q86V88 176 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 RBM45Q8IUH3 476 aaKnown RBP2.94□□□□□ -1.94
NUP54-212ENST00000513248 C20orf196Q8IYI0 205 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 MICU2Q8IYU8 434 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 C10orf111Q8N326 155 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 ZIC4Q8N9L1 334 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 WDR31Q8NA23 367 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 SYT14Q8NB59 555 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 OR8J3Q8NGG0 315 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 OR6T1Q8NGN1 323 aa2.94□□□□□ -1.94
NUP54-212ENST00000513248 MAGEE2Q8TD90 523 aaPredicted RBP2.94□□□□□ -1.94
NUP54-212ENST00000513248 C10orf82Q8WW14 230 aa2.94□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms