RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP14.11□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 TMEM100Q9NV29 134 aa14.11□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 PPP1R14DQ9NXH3 145 aa14.11□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 RAB19A4D1S5 217 aa14.11□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 CD79AP11912 226 aa14.11□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 LYL1P12980 280 aa14.11□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 ADH6P28332 368 aa14.11□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 KISS1Q15726 138 aa14.11□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 RSPO1Q2MKA7 263 aaPredicted RBP14.11□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 PRAMEF20Q5VT98 475 aa14.11□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 UQCC3Q6UW78 93 aa14.11□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 STX12Q86Y82 276 aa14.11□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 OR5D18Q8NGL1 313 aa14.11□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 DEFB126Q9BYW3 111 aa14.11□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 ASF1BQ9NVP2 202 aa14.11□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 DMXL2Q8TDJ6 3036 aa14.11□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 MSGN1A6NI15 193 aa14.1□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 CD59P13987 128 aa14.1□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 RPS2P15880 293 aaKnown RBP14.1□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 PNLIPP16233 465 aa14.1□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 AMY2BP19961 511 aa14.1□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 PTGFRP43088 359 aa14.1□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 ALDH3B1P43353 468 aa14.1□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 LSM6P62312 80 aaKnown RBP14.1□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 SLC35A1P78382 337 aa14.1□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 H3F3AP84243 136 aa14.1□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 NAAAQ02083 359 aa14.1□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 ECH1Q13011 328 aa14.1□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 ARFRP1Q13795 201 aa14.1□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 OR51T1Q8NGJ9 327 aa14.1□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 PGAM5Q96HS1 289 aa14.1□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 ST6GALNAC5Q9BVH7 336 aa14.1□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 SLC26A1Q9H2B4 701 aa14.1□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 OR5AC2Q9NZP5 309 aa14.1□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 RTTNQ86VV8 2226 aa14.1□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 SDCBPO00560 298 aaPredicted RBP14.1□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 TPT1P13693 172 aaKnown RBP14.1□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 NUBP1P53384 320 aa14.1□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 EIF3IQ13347 325 aaKnown RBP14.1□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 ENDOGQ14249 297 aaKnown RBP14.1□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 UBE2V2Q15819 145 aa14.1□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 MRPL14Q6P1L8 145 aaKnown RBP14.1□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 BEND4Q6ZU67 534 aa14.1□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 BAP18Q8IXM2 172 aa14.1□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 OR10C1Q96KK4 312 aa14.1□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 CCDC74BQ96LY2 380 aa14.1□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 CDC6Q99741 560 aa14.1□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 NKX6-2Q9C056 277 aaPredicted RBP14.1□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 TMEM9BQ9NQ34 198 aa14.1□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 V9GYS6 101 aa14.1□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 TMEM218A2RU14 115 aa14.09□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 PMS2P1A4D2B8 440 aa14.09□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 OR5H15A6NDH6 313 aa14.09□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 HPNP05981 417 aa14.09□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 CELA2AP08217 269 aa14.09□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 SNU13P55769 128 aaKnown RBP14.09□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 IL15RAQ13261 267 aa14.09□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 FAM189A2Q15884 450 aa14.09□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 SWI5Q1ZZU3 235 aa14.09□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 RAB11FIP2Q7L804 512 aa14.09□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 GTPBP8Q8N3Z3 284 aaPredicted RBP14.09□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 NPRL2Q8WTW4 380 aa14.09□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 MAFIPQ8WZ33 124 aa14.09□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 TMEM54Q969K7 222 aa14.09□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 NABP1Q96AH0 204 aa14.09□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 PECRQ9BY49 303 aa14.09□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 STMND1H3BQB6 276 aa14.09□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 WRBO00258 174 aa14.09□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 ATG12O94817 140 aa14.09□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 FAM157CP0CG43 387 aa14.09□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 ADCYAP1P18509 176 aa14.09□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 GLRA1P23415 457 aa14.09□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 THBS4P35443 961 aa14.09□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 PCOLCEQ15113 449 aa14.09□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 C10orf128Q5T292 105 aa14.09□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 PRSS54Q6PEW0 395 aa14.09□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 FOXL2NBQ6ZUU3 175 aa14.09□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 IFI44Q8TCB0 444 aa14.09□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 NARS2Q96I59 477 aaKnown RBP14.09□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 ZNF160Q9HCG1 818 aa14.09□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 C19orf25Q9UFG5 118 aaPredicted RBP14.09□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 CEP295Q9C0D2 2601 aa14.08□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 SGCEO43556 437 aa14.08□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 TLX3O43711 291 aaPredicted RBP14.08□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 HTR3BO95264 441 aa14.08□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 ACTL6AO96019 429 aa14.08□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 CD63P08962 238 aa14.08□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 MSR1P21757 451 aa14.08□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 S100PP25815 95 aa14.08□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 FKBP2P26885 142 aaKnown RBP14.08□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 BLVRBP30043 206 aaPredicted RBP14.08□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 ZNF133P52736 654 aaPredicted RBP14.08□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 AKR1C2P52895 323 aa14.08□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 CSNK2A1P68400 391 aaPredicted RBP14.08□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 HIST1H3AP68431 136 aa14.08□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 AKR1C1Q04828 323 aa14.08□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 HIST2H3PS2Q5TEC6 136 aa14.08□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 Q6ZSR3 168 aa14.08□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 HIST2H3AQ71DI3 136 aa14.08□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 CSNK2A3Q8NEV1 391 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms