RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 LOC105371242A0A075B767 164 aa13.29□□□□□ -0.28
LIME1-209ENST00000494776 FAM230AA0A1W2PPH8 454 aa13.29□□□□□ -0.28
LIME1-209ENST00000494776 SRRM5B3KS81 715 aa13.29□□□□□ -0.28
LIME1-209ENST00000494776 TRAPPC2LH3BP13 241 aa13.29□□□□□ -0.28
LIME1-209ENST00000494776 TMPRSS2O15393 492 aa13.29□□□□□ -0.28
LIME1-209ENST00000494776 GATBO75879 557 aaKnown RBP13.29□□□□□ -0.28
LIME1-209ENST00000494776 GNAO1P09471 354 aa13.29□□□□□ -0.28
LIME1-209ENST00000494776 ZNF20P17024 532 aa13.29□□□□□ -0.28
LIME1-209ENST00000494776 GLRA1P23415 457 aa13.29□□□□□ -0.28
LIME1-209ENST00000494776 HAAOP46952 286 aa13.29□□□□□ -0.28
LIME1-209ENST00000494776 NANOS3P60323 173 aaKnown RBP13.29□□□□□ -0.28
LIME1-209ENST00000494776 SCGB2A2Q13296 93 aa13.29□□□□□ -0.28
LIME1-209ENST00000494776 WDR25Q64LD2 544 aaPredicted RBP13.29□□□□□ -0.28
LIME1-209ENST00000494776 TMEM42Q69YG0 159 aa13.29□□□□□ -0.28
LIME1-209ENST00000494776 TMPRSS11AQ6ZMR5 421 aa13.29□□□□□ -0.28
LIME1-209ENST00000494776 TRMT10AQ8TBZ6 339 aaKnown RBP13.29□□□□□ -0.28
LIME1-209ENST00000494776 NPRL2Q8WTW4 380 aa13.29□□□□□ -0.28
LIME1-209ENST00000494776 RNF166Q96A37 237 aaPredicted RBP13.29□□□□□ -0.28
LIME1-209ENST00000494776 C10orf35Q96D05 121 aa13.29□□□□□ -0.28
LIME1-209ENST00000494776 VCX3BQ9H321 246 aa13.29□□□□□ -0.28
LIME1-209ENST00000494776 SNTG1Q9NSN8 517 aa13.29□□□□□ -0.28
LIME1-209ENST00000494776 METRNQ9UJH8 293 aa13.29□□□□□ -0.28
LIME1-209ENST00000494776 HHLA2Q9UM44 414 aa13.29□□□□□ -0.28
LIME1-209ENST00000494776 INSIG2Q9Y5U4 225 aa13.29□□□□□ -0.28
LIME1-209ENST00000494776 RHBDL1O75783 438 aa13.28□□□□□ -0.28
LIME1-209ENST00000494776 ISG15P05161 165 aa13.28□□□□□ -0.28
LIME1-209ENST00000494776 CCDC159P0C7I6 412 aa13.28□□□□□ -0.28
LIME1-209ENST00000494776 OCM2P0CE71 109 aa13.28□□□□□ -0.28
LIME1-209ENST00000494776 OCMP0CE72 109 aaPredicted RBP13.28□□□□□ -0.28
LIME1-209ENST00000494776 ETV1P50549 477 aa13.28□□□□□ -0.28
LIME1-209ENST00000494776 CD276Q5ZPR3 534 aa13.28□□□□□ -0.28
LIME1-209ENST00000494776 SLC36A1Q7Z2H8 476 aa13.28□□□□□ -0.28
LIME1-209ENST00000494776 OR5T2Q8NGG2 359 aa13.28□□□□□ -0.28
LIME1-209ENST00000494776 OR13C3Q8NGS6 347 aa13.28□□□□□ -0.28
LIME1-209ENST00000494776 NANPQ8TBE9 248 aa13.28□□□□□ -0.28
LIME1-209ENST00000494776 HAVCR2Q8TDQ0 301 aa13.28□□□□□ -0.28
LIME1-209ENST00000494776 NRG4Q8WWG1 115 aa13.28□□□□□ -0.28
LIME1-209ENST00000494776 RAB40AQ8WXH6 277 aa13.28□□□□□ -0.28
LIME1-209ENST00000494776 AQP3Q92482 292 aa13.28□□□□□ -0.28
LIME1-209ENST00000494776 TMIGD2Q96BF3 282 aa13.28□□□□□ -0.28
LIME1-209ENST00000494776 FGGYQ96C11 551 aa13.28□□□□□ -0.28
LIME1-209ENST00000494776 C12orf43Q96C57 262 aaKnown RBP13.28□□□□□ -0.28
LIME1-209ENST00000494776 SEH1LQ96EE3 360 aa13.28□□□□□ -0.28
LIME1-209ENST00000494776 TMEM80Q96HE8 168 aa13.28□□□□□ -0.28
LIME1-209ENST00000494776 CCL13Q99616 98 aa13.28□□□□□ -0.28
LIME1-209ENST00000494776 JAM3Q9BX67 310 aa13.28□□□□□ -0.28
LIME1-209ENST00000494776 COMMD4Q9H0A8 199 aa13.28□□□□□ -0.28
LIME1-209ENST00000494776 WDR13Q9H1Z4 485 aa13.28□□□□□ -0.28
LIME1-209ENST00000494776 RASSF4Q9H2L5 321 aa13.28□□□□□ -0.28
LIME1-209ENST00000494776 CTSZQ9UBR2 303 aa13.28□□□□□ -0.28
LIME1-209ENST00000494776 POLDIP2Q9Y2S7 368 aa13.28□□□□□ -0.28
LIME1-209ENST00000494776 CAB39Q9Y376 341 aaPredicted RBP13.28□□□□□ -0.28
LIME1-209ENST00000494776 EXOSC1Q9Y3B2 195 aaKnown RBP13.28□□□□□ -0.28
LIME1-209ENST00000494776 AUP1Q9Y679 476 aa13.28□□□□□ -0.28
LIME1-209ENST00000494776 PQLC2LA1A4F0 135 aa13.27□□□□□ -0.29
LIME1-209ENST00000494776 NKX6-3A6NJ46 265 aa13.27□□□□□ -0.29
LIME1-209ENST00000494776 AVPP01185 164 aa13.27□□□□□ -0.29
LIME1-209ENST00000494776 RPSAP08865 295 aaKnown RBP13.27□□□□□ -0.29
LIME1-209ENST00000494776 LIMS3P0CW19 117 aa13.27□□□□□ -0.29
LIME1-209ENST00000494776 LIMS4P0CW20 117 aa13.27□□□□□ -0.29
LIME1-209ENST00000494776 ADRA2CP18825 462 aa13.27□□□□□ -0.29
LIME1-209ENST00000494776 AQP4P55087 323 aa13.27□□□□□ -0.29
LIME1-209ENST00000494776 CNN3Q15417 329 aaKnown RBP13.27□□□□□ -0.29
LIME1-209ENST00000494776 UBE2V2Q15819 145 aa13.27□□□□□ -0.29
LIME1-209ENST00000494776 ZNF841Q6ZN19 808 aa13.27□□□□□ -0.29
LIME1-209ENST00000494776 OR5AK2Q8NH90 309 aa13.27□□□□□ -0.29
LIME1-209ENST00000494776 PP6455Q8WZ26 134 aa13.27□□□□□ -0.29
LIME1-209ENST00000494776 TFAP2CQ92754 450 aa13.27□□□□□ -0.29
LIME1-209ENST00000494776 GGHQ92820 318 aa13.27□□□□□ -0.29
LIME1-209ENST00000494776 NUDT16L1Q9BRJ7 211 aaKnown RBP13.27□□□□□ -0.29
LIME1-209ENST00000494776 ZNF649Q9BS31 505 aa13.27□□□□□ -0.29
LIME1-209ENST00000494776 CHST5Q9GZS9 411 aa13.27□□□□□ -0.29
LIME1-209ENST00000494776 DIMT1Q9UNQ2 313 aaKnown RBP13.27□□□□□ -0.29
LIME1-209ENST00000494776 IGHV2-70DA0A0C4DH43 119 aa13.26□□□□□ -0.29
LIME1-209ENST00000494776 TRBV2A0A0J9YWF9 115 aa13.26□□□□□ -0.29
LIME1-209ENST00000494776 EFCAB10A6NFE3 127 aa13.26□□□□□ -0.29
LIME1-209ENST00000494776 TMEM212A6NML5 194 aa13.26□□□□□ -0.29
LIME1-209ENST00000494776 OR4C45A6NMZ5 311 aa13.26□□□□□ -0.29
LIME1-209ENST00000494776 E9PI62 339 aa13.26□□□□□ -0.29
LIME1-209ENST00000494776 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.26□□□□□ -0.29
LIME1-209ENST00000494776 J3QT63 122 aa13.26□□□□□ -0.29
LIME1-209ENST00000494776 DVL1O14640 695 aa13.26□□□□□ -0.29
LIME1-209ENST00000494776 TNFRSF13BO14836 293 aaPredicted RBP13.26□□□□□ -0.29
LIME1-209ENST00000494776 NDUFB3O43676 98 aa13.26□□□□□ -0.29
LIME1-209ENST00000494776 GABRA2P47869 451 aa13.26□□□□□ -0.29
LIME1-209ENST00000494776 TGM4P49221 684 aa13.26□□□□□ -0.29
LIME1-209ENST00000494776 FUT6P51993 359 aa13.26□□□□□ -0.29
LIME1-209ENST00000494776 ST3GAL4Q11206 333 aa13.26□□□□□ -0.29
LIME1-209ENST00000494776 ANK3Q12955 4377 aaKnown RBP13.26□□□□□ -0.29
LIME1-209ENST00000494776 ARMCX4Q5H9R4 360 aa13.26□□□□□ -0.29
LIME1-209ENST00000494776 C1orf229Q6ZS94 237 aaPredicted RBP13.26□□□□□ -0.29
LIME1-209ENST00000494776 C1QL2Q7Z5L3 287 aa13.26□□□□□ -0.29
LIME1-209ENST00000494776 ANGPTL5Q86XS5 388 aa13.26□□□□□ -0.29
LIME1-209ENST00000494776 STX19Q8N4C7 294 aa13.26□□□□□ -0.29
LIME1-209ENST00000494776 BPIFB6Q8NFQ5 453 aa13.26□□□□□ -0.29
LIME1-209ENST00000494776 ST8SIA4Q92187 359 aa13.26□□□□□ -0.29
LIME1-209ENST00000494776 ADAT3Q96EY9 351 aaPredicted RBP13.26□□□□□ -0.29
LIME1-209ENST00000494776 BORCS8Q96FH0 119 aa13.26□□□□□ -0.29
LIME1-209ENST00000494776 OCEL1Q9H607 264 aa13.26□□□□□ -0.29
LIME1-209ENST00000494776 NLKQ9UBE8 527 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms