RNA–Protein interactions for RNA: ENST00000459756.5

COL7A1-203, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 818 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-203ENST00000459756 FAM216BQ8N7L0 139 aa13.34□□□□□ -0.27
COL7A1-203ENST00000459756 OR5T2Q8NGG2 359 aa13.34□□□□□ -0.27
COL7A1-203ENST00000459756 GCDHQ92947 438 aaPredicted RBP13.34□□□□□ -0.27
COL7A1-203ENST00000459756 MED30Q96HR3 178 aa13.34□□□□□ -0.27
COL7A1-203ENST00000459756 DMRTB1Q96MA1 342 aa13.34□□□□□ -0.27
COL7A1-203ENST00000459756 ZNF48Q96MX3 618 aaPredicted RBP13.34□□□□□ -0.27
COL7A1-203ENST00000459756 WDFY2Q96P53 400 aa13.34□□□□□ -0.27
COL7A1-203ENST00000459756 DCLRE1BQ9H816 532 aa13.34□□□□□ -0.27
COL7A1-203ENST00000459756 RPUSD1Q9UJJ7 312 aaKnown RBP13.34□□□□□ -0.27
COL7A1-203ENST00000459756 TENM1Q9UKZ4 2725 aa13.34□□□□□ -0.27
COL7A1-203ENST00000459756 A0A1B0GW55 424 aa13.33□□□□□ -0.28
COL7A1-203ENST00000459756 TMEM89A2RUT3 159 aa13.33□□□□□ -0.28
COL7A1-203ENST00000459756 DNAJC9-AS1A6NH13 148 aa13.33□□□□□ -0.28
COL7A1-203ENST00000459756 E9PQ18 207 aa13.33□□□□□ -0.28
COL7A1-203ENST00000459756 RHBDL1O75783 438 aa13.33□□□□□ -0.28
COL7A1-203ENST00000459756 SFTPBP07988 381 aa13.33□□□□□ -0.28
COL7A1-203ENST00000459756 DUX4L2P0CJ85 424 aa13.33□□□□□ -0.28
COL7A1-203ENST00000459756 DUX4L3P0CJ86 424 aa13.33□□□□□ -0.28
COL7A1-203ENST00000459756 DUX4L4P0CJ87 422 aa13.33□□□□□ -0.28
COL7A1-203ENST00000459756 DUX4L5P0CJ88 424 aa13.33□□□□□ -0.28
COL7A1-203ENST00000459756 DUX4L6P0CJ89 424 aa13.33□□□□□ -0.28
COL7A1-203ENST00000459756 DUX4L7P0CJ90 424 aa13.33□□□□□ -0.28
COL7A1-203ENST00000459756 MMP9P14780 707 aa13.33□□□□□ -0.28
COL7A1-203ENST00000459756 AMY2BP19961 511 aa13.33□□□□□ -0.28
COL7A1-203ENST00000459756 CCL1P22362 96 aa13.33□□□□□ -0.28
COL7A1-203ENST00000459756 GLRA1P23415 457 aa13.33□□□□□ -0.28
COL7A1-203ENST00000459756 PRTN3P24158 256 aa13.33□□□□□ -0.28
COL7A1-203ENST00000459756 COMPP49747 757 aaPredicted RBP13.33□□□□□ -0.28
COL7A1-203ENST00000459756 IKZF1Q13422 519 aa13.33□□□□□ -0.28
COL7A1-203ENST00000459756 HAGHLQ6PII5 290 aaPredicted RBP13.33□□□□□ -0.28
COL7A1-203ENST00000459756 DUX4L9Q6RFH8 374 aaPredicted RBP13.33□□□□□ -0.28
COL7A1-203ENST00000459756 ZNF788Q6ZQV5 615 aa13.33□□□□□ -0.28
COL7A1-203ENST00000459756 OR14K1Q8NGZ2 314 aa13.33□□□□□ -0.28
COL7A1-203ENST00000459756 ANGPTL6Q8NI99 470 aa13.33□□□□□ -0.28
COL7A1-203ENST00000459756 AQP3Q92482 292 aa13.33□□□□□ -0.28
COL7A1-203ENST00000459756 RORBQ92753 470 aa13.33□□□□□ -0.28
COL7A1-203ENST00000459756 UBE2FQ969M7 185 aa13.33□□□□□ -0.28
COL7A1-203ENST00000459756 TBX15Q96SF7 602 aa13.33□□□□□ -0.28
COL7A1-203ENST00000459756 SIRPDQ9H106 197 aa13.33□□□□□ -0.28
COL7A1-203ENST00000459756 CNTD2Q9H8S5 307 aa13.33□□□□□ -0.28
COL7A1-203ENST00000459756 SNTG1Q9NSN8 517 aa13.33□□□□□ -0.28
COL7A1-203ENST00000459756 NLKQ9UBE8 527 aa13.33□□□□□ -0.28
COL7A1-203ENST00000459756 DUX4Q9UBX2 424 aa13.33□□□□□ -0.28
COL7A1-203ENST00000459756 SLC22A13Q9Y226 551 aa13.33□□□□□ -0.28
COL7A1-203ENST00000459756 A0A1B0GVI7 797 aa13.32□□□□□ -0.28
COL7A1-203ENST00000459756 SNTNA6NMZ2 147 aa13.32□□□□□ -0.28
COL7A1-203ENST00000459756 OR2AT4A6NND4 320 aa13.32□□□□□ -0.28
COL7A1-203ENST00000459756 CLDN34H7C241 214 aa13.32□□□□□ -0.28
COL7A1-203ENST00000459756 ENTPD6O75354 484 aa13.32□□□□□ -0.28
COL7A1-203ENST00000459756 ACTC1P68032 377 aa13.32□□□□□ -0.28
COL7A1-203ENST00000459756 ACTA1P68133 377 aa13.32□□□□□ -0.28
COL7A1-203ENST00000459756 IL13RA1P78552 427 aa13.32□□□□□ -0.28
COL7A1-203ENST00000459756 PDCD1Q15116 288 aa13.32□□□□□ -0.28
COL7A1-203ENST00000459756 OCLNQ16625 522 aa13.32□□□□□ -0.28
COL7A1-203ENST00000459756 DMRTC1Q5HYR2 192 aa13.32□□□□□ -0.28
COL7A1-203ENST00000459756 BRD3OSQ6XYD6 125 aa13.32□□□□□ -0.28
COL7A1-203ENST00000459756 FAM220AQ7Z4H9 259 aa13.32□□□□□ -0.28
COL7A1-203ENST00000459756 ZNF573Q86YE8 665 aa13.32□□□□□ -0.28
COL7A1-203ENST00000459756 LY6G5BQ8NDX9 201 aa13.32□□□□□ -0.28
COL7A1-203ENST00000459756 CCDC54Q8NEL0 328 aa13.32□□□□□ -0.28
COL7A1-203ENST00000459756 TMIGD2Q96BF3 282 aa13.32□□□□□ -0.28
COL7A1-203ENST00000459756 GPR173Q9NS66 373 aa13.32□□□□□ -0.28
COL7A1-203ENST00000459756 SMPD3Q9NY59 655 aaPredicted RBP13.32□□□□□ -0.28
COL7A1-203ENST00000459756 RASL12Q9NYN1 266 aa13.32□□□□□ -0.28
COL7A1-203ENST00000459756 GMPPBQ9Y5P6 360 aa13.32□□□□□ -0.28
COL7A1-203ENST00000459756 KPTNQ9Y664 436 aa13.32□□□□□ -0.28
COL7A1-203ENST00000459756 J3QT63 122 aa13.31□□□□□ -0.28
COL7A1-203ENST00000459756 HAX1O00165 279 aa13.31□□□□□ -0.28
COL7A1-203ENST00000459756 SIGLEC5O15389 551 aa13.31□□□□□ -0.28
COL7A1-203ENST00000459756 SYT7O43581 403 aa13.31□□□□□ -0.28
COL7A1-203ENST00000459756 ACAA1P09110 424 aaPredicted RBP13.31□□□□□ -0.28
COL7A1-203ENST00000459756 ISL1P61371 349 aa13.31□□□□□ -0.28
COL7A1-203ENST00000459756 ARF6P62330 175 aa13.31□□□□□ -0.28
COL7A1-203ENST00000459756 ZNF85Q03923 595 aa13.31□□□□□ -0.28
COL7A1-203ENST00000459756 SLC34A1Q06495 639 aa13.31□□□□□ -0.28
COL7A1-203ENST00000459756 CDONQ4KMG0 1287 aa13.31□□□□□ -0.28
COL7A1-203ENST00000459756 KCTD20Q7Z5Y7 419 aa13.31□□□□□ -0.28
COL7A1-203ENST00000459756 FGFRL1Q8N441 504 aa13.31□□□□□ -0.28
COL7A1-203ENST00000459756 SLC25A28Q96A46 364 aa13.31□□□□□ -0.28
COL7A1-203ENST00000459756 RNFT2Q96EX2 444 aa13.31□□□□□ -0.28
COL7A1-203ENST00000459756 C1orf147Q96MC9 270 aaPredicted RBP13.31□□□□□ -0.28
COL7A1-203ENST00000459756 GAFA1Q96PS6 74 aa13.31□□□□□ -0.28
COL7A1-203ENST00000459756 ADI1Q9BV57 179 aa13.31□□□□□ -0.28
COL7A1-203ENST00000459756 PRDM13Q9H4Q3 707 aa13.31□□□□□ -0.28
COL7A1-203ENST00000459756 PLEKHA1Q9HB21 404 aa13.31□□□□□ -0.28
COL7A1-203ENST00000459756 GNG8Q9UK08 70 aa13.31□□□□□ -0.28
COL7A1-203ENST00000459756 POLDIP2Q9Y2S7 368 aa13.31□□□□□ -0.28
COL7A1-203ENST00000459756 PCDHGB1Q9Y5G3 927 aa13.31□□□□□ -0.28
COL7A1-203ENST00000459756 SOX21Q9Y651 276 aaPredicted RBP13.31□□□□□ -0.28
COL7A1-203ENST00000459756 CENPVL3A0A0U1RRI6 287 aa13.3□□□□□ -0.28
COL7A1-203ENST00000459756 PQLC2LA1A4F0 135 aa13.3□□□□□ -0.28
COL7A1-203ENST00000459756 ANKRD61A6NGH8 418 aa13.3□□□□□ -0.28
COL7A1-203ENST00000459756 J3QRE1 110 aa13.3□□□□□ -0.28
COL7A1-203ENST00000459756 RNASE1P07998 156 aaKnown RBP13.3□□□□□ -0.28
COL7A1-203ENST00000459756 UBCP0CG48 685 aaKnown RBP13.3□□□□□ -0.28
COL7A1-203ENST00000459756 HAAOP46952 286 aa13.3□□□□□ -0.28
COL7A1-203ENST00000459756 CAV3P56539 151 aa13.3□□□□□ -0.28
COL7A1-203ENST00000459756 SLC9A3R2Q15599 337 aa13.3□□□□□ -0.28
COL7A1-203ENST00000459756 ODF4Q2M2E3 257 aa13.3□□□□□ -0.28
COL7A1-203ENST00000459756 SMIM21Q3B7S5 101 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms