RNA–Protein interactions for RNA: ENST00000448971.5

USP39-206, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-206ENST00000448971 C11orf53Q8IXP5 236 aa12.15□□□□□ -0.46
USP39-206ENST00000448971 SYS1Q8N2H4 156 aa12.15□□□□□ -0.46
USP39-206ENST00000448971 TEX29Q8N6K0 151 aa12.15□□□□□ -0.46
USP39-206ENST00000448971 SCCPDHQ8NBX0 429 aa12.15□□□□□ -0.46
USP39-206ENST00000448971 CCDC54Q8NEL0 328 aa12.15□□□□□ -0.46
USP39-206ENST00000448971 OR5A2Q8NGI9 324 aa12.15□□□□□ -0.46
USP39-206ENST00000448971 OR2G2Q8NGZ5 317 aa12.15□□□□□ -0.46
USP39-206ENST00000448971 PELI1Q96FA3 418 aa12.15□□□□□ -0.46
USP39-206ENST00000448971 ERVK13-1Q9NX77 482 aa12.15□□□□□ -0.46
USP39-206ENST00000448971 NKX1-2Q9UD57 310 aaPredicted RBP12.15□□□□□ -0.46
USP39-206ENST00000448971 LOC105371242A0A075B767 164 aa12.14□□□□□ -0.47
USP39-206ENST00000448971 SRRM5B3KS81 715 aa12.14□□□□□ -0.47
USP39-206ENST00000448971 H0YAE9 185 aa12.14□□□□□ -0.47
USP39-206ENST00000448971 AKR7A2O43488 359 aa12.14□□□□□ -0.47
USP39-206ENST00000448971 GATBO75879 557 aaKnown RBP12.14□□□□□ -0.47
USP39-206ENST00000448971 ZNF12P17014 697 aa12.14□□□□□ -0.47
USP39-206ENST00000448971 ZNF20P17024 532 aa12.14□□□□□ -0.47
USP39-206ENST00000448971 TMEM244Q5VVB8 128 aa12.14□□□□□ -0.47
USP39-206ENST00000448971 TEX36Q5VZQ5 186 aa12.14□□□□□ -0.47
USP39-206ENST00000448971 HAGHLQ6PII5 290 aaPredicted RBP12.14□□□□□ -0.47
USP39-206ENST00000448971 BTNL3Q6UXE8 466 aa12.14□□□□□ -0.47
USP39-206ENST00000448971 FAM90A1Q86YD7 464 aa12.14□□□□□ -0.47
USP39-206ENST00000448971 ZNF676Q8N7Q3 588 aa12.14□□□□□ -0.47
USP39-206ENST00000448971 OR10Z1Q8NGY1 313 aa12.14□□□□□ -0.47
USP39-206ENST00000448971 TRMT10AQ8TBZ6 339 aaKnown RBP12.14□□□□□ -0.47
USP39-206ENST00000448971 NPRL2Q8WTW4 380 aa12.14□□□□□ -0.47
USP39-206ENST00000448971 MRI1Q9BV20 369 aa12.14□□□□□ -0.47
USP39-206ENST00000448971 TMPRSS13Q9BYE2 586 aa12.14□□□□□ -0.47
USP39-206ENST00000448971 C7orf69Q9H7B7 122 aa12.14□□□□□ -0.47
USP39-206ENST00000448971 ERVK-18Q9QC07 812 aa12.14□□□□□ -0.47
USP39-206ENST00000448971 CTSZQ9UBR2 303 aa12.14□□□□□ -0.47
USP39-206ENST00000448971 TRRAPQ9Y4A5 3859 aa12.14□□□□□ -0.47
USP39-206ENST00000448971 PPIAL4CA0A0B4J2A2 164 aa12.13□□□□□ -0.47
USP39-206ENST00000448971 NKX6-3A6NJ46 265 aa12.13□□□□□ -0.47
USP39-206ENST00000448971 TMPRSS2O15393 492 aa12.13□□□□□ -0.47
USP39-206ENST00000448971 NDUFA2O43678 99 aa12.13□□□□□ -0.47
USP39-206ENST00000448971 LHBP01229 141 aa12.13□□□□□ -0.47
USP39-206ENST00000448971 GNAO1P09471 354 aa12.13□□□□□ -0.47
USP39-206ENST00000448971 MUC1P15941 1255 aaPredicted RBP12.13□□□□□ -0.47
USP39-206ENST00000448971 MYL12AP19105 171 aa12.13□□□□□ -0.47
USP39-206ENST00000448971 GLRA1P23415 457 aa12.13□□□□□ -0.47
USP39-206ENST00000448971 HAAOP46952 286 aa12.13□□□□□ -0.47
USP39-206ENST00000448971 NANOS3P60323 173 aaKnown RBP12.13□□□□□ -0.47
USP39-206ENST00000448971 MRPL28Q13084 256 aaKnown RBP12.13□□□□□ -0.47
USP39-206ENST00000448971 MED21Q13503 144 aa12.13□□□□□ -0.47
USP39-206ENST00000448971 ALKBH1Q13686 389 aaKnown RBP12.13□□□□□ -0.47
USP39-206ENST00000448971 WDR25Q64LD2 544 aaPredicted RBP12.13□□□□□ -0.47
USP39-206ENST00000448971 TMEM42Q69YG0 159 aa12.13□□□□□ -0.47
USP39-206ENST00000448971 KRT74Q7RTS7 529 aa12.13□□□□□ -0.47
USP39-206ENST00000448971 RDH10Q8IZV5 341 aa12.13□□□□□ -0.47
USP39-206ENST00000448971 CHST5Q9GZS9 411 aa12.13□□□□□ -0.47
USP39-206ENST00000448971 OR51I2Q9H344 312 aa12.13□□□□□ -0.47
USP39-206ENST00000448971 ISG20L2Q9H9L3 353 aaKnown RBP12.13□□□□□ -0.47
USP39-206ENST00000448971 MMP26Q9NRE1 261 aa12.13□□□□□ -0.47
USP39-206ENST00000448971 SNTG1Q9NSN8 517 aa12.13□□□□□ -0.47
USP39-206ENST00000448971 MRPS18AQ9NVS2 196 aaKnown RBP12.13□□□□□ -0.47
USP39-206ENST00000448971 FRRS1LQ9P0K9 344 aa12.13□□□□□ -0.47
USP39-206ENST00000448971 SLC7A11Q9UPY5 501 aa12.13□□□□□ -0.47
USP39-206ENST00000448971 HSPE1-MOB4S4R3N1 261 aa12.13□□□□□ -0.47
USP39-206ENST00000448971 TGP01266 2768 aa12.13□□□□□ -0.47
USP39-206ENST00000448971 FAM230AA0A1W2PPH8 454 aa12.12□□□□□ -0.47
USP39-206ENST00000448971 TMEM89A2RUT3 159 aa12.12□□□□□ -0.47
USP39-206ENST00000448971 J3QT63 122 aa12.12□□□□□ -0.47
USP39-206ENST00000448971 KCNAB3O43448 404 aa12.12□□□□□ -0.47
USP39-206ENST00000448971 RHBDL1O75783 438 aa12.12□□□□□ -0.47
USP39-206ENST00000448971 SERPINA3P01011 423 aa12.12□□□□□ -0.47
USP39-206ENST00000448971 OCM2P0CE71 109 aa12.12□□□□□ -0.47
USP39-206ENST00000448971 OCMP0CE72 109 aaPredicted RBP12.12□□□□□ -0.47
USP39-206ENST00000448971 ADRA2CP18825 462 aa12.12□□□□□ -0.47
USP39-206ENST00000448971 DCKP27707 260 aa12.12□□□□□ -0.47
USP39-206ENST00000448971 CFHR2P36980 270 aa12.12□□□□□ -0.47
USP39-206ENST00000448971 NPY4RP50391 375 aa12.12□□□□□ -0.47
USP39-206ENST00000448971 CCR9P51686 369 aa12.12□□□□□ -0.47
USP39-206ENST00000448971 GBX2P52951 348 aaPredicted RBP12.12□□□□□ -0.47
USP39-206ENST00000448971 SCGB2A2Q13296 93 aa12.12□□□□□ -0.47
USP39-206ENST00000448971 CNN3Q15417 329 aaKnown RBP12.12□□□□□ -0.47
USP39-206ENST00000448971 ARMCX4Q5H9R4 360 aa12.12□□□□□ -0.47
USP39-206ENST00000448971 FAM76BQ5HYJ3 339 aa12.12□□□□□ -0.47
USP39-206ENST00000448971 FDX2Q6P4F2 183 aa12.12□□□□□ -0.47
USP39-206ENST00000448971 Q6ZSR3 168 aa12.12□□□□□ -0.47
USP39-206ENST00000448971 ZNF573Q86YE8 665 aa12.12□□□□□ -0.47
USP39-206ENST00000448971 OR13C3Q8NGS6 347 aa12.12□□□□□ -0.47
USP39-206ENST00000448971 C12orf43Q96C57 262 aaKnown RBP12.12□□□□□ -0.47
USP39-206ENST00000448971 SEH1LQ96EE3 360 aa12.12□□□□□ -0.47
USP39-206ENST00000448971 COMMD4Q9H0A8 199 aa12.12□□□□□ -0.47
USP39-206ENST00000448971 WDR13Q9H1Z4 485 aa12.12□□□□□ -0.47
USP39-206ENST00000448971 VCX3BQ9H321 246 aa12.12□□□□□ -0.47
USP39-206ENST00000448971 FGF20Q9NP95 211 aaPredicted RBP12.12□□□□□ -0.47
USP39-206ENST00000448971 CHCHD3Q9NX63 227 aaKnown RBP12.12□□□□□ -0.47
USP39-206ENST00000448971 HHLA2Q9UM44 414 aa12.12□□□□□ -0.47
USP39-206ENST00000448971 POLDIP2Q9Y2S7 368 aa12.12□□□□□ -0.47
USP39-206ENST00000448971 POLR3KQ9Y2Y1 108 aaPredicted RBP12.12□□□□□ -0.47
USP39-206ENST00000448971 INSIG2Q9Y5U4 225 aa12.12□□□□□ -0.47
USP39-206ENST00000448971 IGHV2-70DA0A0C4DH43 119 aa12.11□□□□□ -0.47
USP39-206ENST00000448971 TRAPPC2LH3BP13 241 aa12.11□□□□□ -0.47
USP39-206ENST00000448971 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.11□□□□□ -0.47
USP39-206ENST00000448971 AVPP01185 164 aa12.11□□□□□ -0.47
USP39-206ENST00000448971 CCDC159P0C7I6 412 aa12.11□□□□□ -0.47
USP39-206ENST00000448971 LIMS3P0CW19 117 aa12.11□□□□□ -0.47
USP39-206ENST00000448971 LIMS4P0CW20 117 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms