RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 MAGT1Q9H0U3 335 aa10.47□□□□□ -0.73
MSH6-204ENST00000445503 URGCP-MRPS24S4R325 110 aa10.47□□□□□ -0.73
MSH6-204ENST00000445503 JTBO76095 146 aa10.47□□□□□ -0.73
MSH6-204ENST00000445503 SYT13Q7L8C5 426 aa10.47□□□□□ -0.73
MSH6-204ENST00000445503 AKR7LQ8NHP1 331 aa10.47□□□□□ -0.73
MSH6-204ENST00000445503 CYYR1Q96J86 154 aa10.47□□□□□ -0.73
MSH6-204ENST00000445503 NUP210Q8TEM1 1887 aaPredicted RBP10.47□□□□□ -0.73
MSH6-204ENST00000445503 KLK2P20151 261 aa10.47□□□□□ -0.73
MSH6-204ENST00000445503 ECH1Q13011 328 aa10.47□□□□□ -0.73
MSH6-204ENST00000445503 YRDCQ86U90 279 aaKnown RBP10.47□□□□□ -0.73
MSH6-204ENST00000445503 PTX4Q96A99 478 aa10.47□□□□□ -0.73
MSH6-204ENST00000445503 PBDC1Q9BVG4 233 aa10.47□□□□□ -0.73
MSH6-204ENST00000445503 PECRQ9BY49 303 aa10.47□□□□□ -0.73
MSH6-204ENST00000445503 ZNF107Q9UII5 783 aaPredicted RBP10.47□□□□□ -0.73
MSH6-204ENST00000445503 APOC1P02654 83 aa10.46□□□□□ -0.73
MSH6-204ENST00000445503 AFF3P51826 1226 aaKnown RBP10.46□□□□□ -0.73
MSH6-204ENST00000445503 USF2Q15853 346 aaPredicted RBP10.46□□□□□ -0.73
MSH6-204ENST00000445503 ETV3LQ6ZN32 361 aa10.46□□□□□ -0.73
MSH6-204ENST00000445503 RSRP1Q9BUV0 290 aa10.46□□□□□ -0.73
MSH6-204ENST00000445503 MYOTQ9UBF9 498 aa10.46□□□□□ -0.73
MSH6-204ENST00000445503 TRIOBPQ9H2D6 2365 aa10.46□□□□□ -0.74
MSH6-204ENST00000445503 C1QL1O75973 258 aa10.46□□□□□ -0.74
MSH6-204ENST00000445503 MSX1P28360 303 aa10.46□□□□□ -0.74
MSH6-204ENST00000445503 LPAR6P43657 344 aa10.46□□□□□ -0.74
MSH6-204ENST00000445503 F2RL1P55085 397 aa10.46□□□□□ -0.74
MSH6-204ENST00000445503 MALLQ13021 153 aa10.46□□□□□ -0.74
MSH6-204ENST00000445503 PNLIPRP3Q17RR3 467 aa10.46□□□□□ -0.74
MSH6-204ENST00000445503 IL34Q6ZMJ4 242 aa10.46□□□□□ -0.74
MSH6-204ENST00000445503 PRR18Q8N4B5 295 aa10.46□□□□□ -0.74
MSH6-204ENST00000445503 SUMF2Q8NBJ7 301 aa10.46□□□□□ -0.74
MSH6-204ENST00000445503 NRIP2Q9BQI9 281 aa10.46□□□□□ -0.74
MSH6-204ENST00000445503 RNF126Q9BV68 326 aa10.46□□□□□ -0.74
MSH6-204ENST00000445503 FSCN3Q9NQT6 498 aa10.46□□□□□ -0.74
MSH6-204ENST00000445503 IGKV3D-11A0A0A0MRZ8 115 aa10.46□□□□□ -0.74
MSH6-204ENST00000445503 NPIPB7O75200 414 aa10.46□□□□□ -0.74
MSH6-204ENST00000445503 ARG1P05089 322 aa10.46□□□□□ -0.74
MSH6-204ENST00000445503 HPNP05981 417 aa10.46□□□□□ -0.74
MSH6-204ENST00000445503 GLULP15104 373 aa10.46□□□□□ -0.74
MSH6-204ENST00000445503 OTX2P32243 289 aa10.46□□□□□ -0.74
MSH6-204ENST00000445503 TMEM50BP56557 158 aa10.46□□□□□ -0.74
MSH6-204ENST00000445503 EIF4E3Q8N5X7 224 aaKnown RBP10.46□□□□□ -0.74
MSH6-204ENST00000445503 HIST1H2AAQ96QV6 131 aa10.46□□□□□ -0.74
MSH6-204ENST00000445503 UCN2Q96RP3 112 aa10.46□□□□□ -0.74
MSH6-204ENST00000445503 IER2Q9BTL4 223 aa10.46□□□□□ -0.74
MSH6-204ENST00000445503 ZNF319Q9P2F9 582 aa10.46□□□□□ -0.74
MSH6-204ENST00000445503 UMAD1C9J7I0 102 aa10.45□□□□□ -0.74
MSH6-204ENST00000445503 P2RY4P51582 365 aa10.45□□□□□ -0.74
MSH6-204ENST00000445503 RPS18P62269 152 aaKnown RBP10.45□□□□□ -0.74
MSH6-204ENST00000445503 TGIF1Q15583 401 aa10.45□□□□□ -0.74
MSH6-204ENST00000445503 PABPC1L2AQ5JQF8 200 aa10.45□□□□□ -0.74
MSH6-204ENST00000445503 TMEM14DPA8MWL7 114 aa10.45□□□□□ -0.74
MSH6-204ENST00000445503 FTCDNL1E5RQL4 147 aa10.45□□□□□ -0.74
MSH6-204ENST00000445503 DHHO43323 396 aa10.45□□□□□ -0.74
MSH6-204ENST00000445503 CST4P01036 141 aa10.45□□□□□ -0.74
MSH6-204ENST00000445503 OR5AC1P0C628 307 aa10.45□□□□□ -0.74
MSH6-204ENST00000445503 SMAD4Q13485 552 aaKnown RBP10.45□□□□□ -0.74
MSH6-204ENST00000445503 SOHLH1Q5JUK2 328 aa10.45□□□□□ -0.74
MSH6-204ENST00000445503 PLXDC2Q6UX71 529 aa10.45□□□□□ -0.74
MSH6-204ENST00000445503 FBXL14Q8N1E6 418 aa10.45□□□□□ -0.74
MSH6-204ENST00000445503 D2HGDHQ8N465 521 aa10.45□□□□□ -0.74
MSH6-204ENST00000445503 OR8U1Q8NH10 309 aa10.45□□□□□ -0.74
MSH6-204ENST00000445503 ALKBH3Q96Q83 286 aaPredicted RBP10.45□□□□□ -0.74
MSH6-204ENST00000445503 CLCC1Q96S66 551 aa10.45□□□□□ -0.74
MSH6-204ENST00000445503 PIGQQ9BRB3 760 aa10.45□□□□□ -0.74
MSH6-204ENST00000445503 EDEM2Q9BV94 578 aa10.45□□□□□ -0.74
MSH6-204ENST00000445503 NECAP2Q9NVZ3 263 aa10.45□□□□□ -0.74
MSH6-204ENST00000445503 LHX6Q9UPM6 363 aa10.45□□□□□ -0.74
MSH6-204ENST00000445503 TAAR5O14804 337 aa10.45□□□□□ -0.74
MSH6-204ENST00000445503 CD37P11049 281 aa10.45□□□□□ -0.74
MSH6-204ENST00000445503 B4GALT1P15291 398 aa10.45□□□□□ -0.74
MSH6-204ENST00000445503 RAB2AP61019 212 aa10.45□□□□□ -0.74
MSH6-204ENST00000445503 OPN5Q6U736 354 aa10.45□□□□□ -0.74
MSH6-204ENST00000445503 FAM24BQ8N5W8 94 aa10.45□□□□□ -0.74
MSH6-204ENST00000445503 TCEAL3Q969E4 200 aa10.45□□□□□ -0.74
MSH6-204ENST00000445503 FAM131CQ96AQ9 280 aa10.45□□□□□ -0.74
MSH6-204ENST00000445503 SLC26A1Q9H2B4 701 aa10.45□□□□□ -0.74
MSH6-204ENST00000445503 ZNF576Q9H609 170 aa10.45□□□□□ -0.74
MSH6-204ENST00000445503 ZNF286AQ9HBT8 521 aa10.45□□□□□ -0.74
MSH6-204ENST00000445503 SLC2A8Q9NY64 477 aa10.45□□□□□ -0.74
MSH6-204ENST00000445503 PRSS44E7EML9 344 aa10.44□□□□□ -0.74
MSH6-204ENST00000445503 TNFSF11O14788 317 aa10.44□□□□□ -0.74
MSH6-204ENST00000445503 HSPA12AO43301 675 aa10.44□□□□□ -0.74
MSH6-204ENST00000445503 RFC3P40938 356 aa10.44□□□□□ -0.74
MSH6-204ENST00000445503 HAGHQ16775 308 aa10.44□□□□□ -0.74
MSH6-204ENST00000445503 EIF2S3LQ2VIR3 472 aaKnown RBP10.44□□□□□ -0.74
MSH6-204ENST00000445503 RPUSD3Q6P087 351 aaKnown RBP10.44□□□□□ -0.74
MSH6-204ENST00000445503 GUSBP11Q6P575 273 aa10.44□□□□□ -0.74
MSH6-204ENST00000445503 SLC16A14Q7RTX9 510 aa10.44□□□□□ -0.74
MSH6-204ENST00000445503 OR5AS1Q8N127 324 aa10.44□□□□□ -0.74
MSH6-204ENST00000445503 SPACA9Q96E40 222 aaPredicted RBP10.44□□□□□ -0.74
MSH6-204ENST00000445503 ZNF285Q96NJ3 590 aa10.44□□□□□ -0.74
MSH6-204ENST00000445503 KPTNQ9Y664 436 aa10.44□□□□□ -0.74
MSH6-204ENST00000445503 TTLL8A6PVC2 850 aa10.44□□□□□ -0.74
MSH6-204ENST00000445503 SERPINE3A8MV23 424 aa10.44□□□□□ -0.74
MSH6-204ENST00000445503 ST8SIA3O43173 380 aa10.44□□□□□ -0.74
MSH6-204ENST00000445503 RBMXL2O75526 392 aaKnown RBP10.44□□□□□ -0.74
MSH6-204ENST00000445503 IL2RAP01589 272 aa10.44□□□□□ -0.74
MSH6-204ENST00000445503 NQO2P16083 231 aa10.44□□□□□ -0.74
MSH6-204ENST00000445503 GABRA4P48169 554 aa10.44□□□□□ -0.74
MSH6-204ENST00000445503 NXPH1P58417 271 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms