RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 FAM185AQ8N0U4 392 aa6.37□□□□□ -1.39
VPS50-204ENST00000438395 ZSCAN4Q8NAM6 433 aaPredicted RBP6.37□□□□□ -1.39
VPS50-204ENST00000438395 FAM110DQ8TAY7 271 aaPredicted RBP6.37□□□□□ -1.39
VPS50-204ENST00000438395 GIPC3Q8TF64 312 aa6.37□□□□□ -1.39
VPS50-204ENST00000438395 ZNRF4Q8WWF5 429 aa6.37□□□□□ -1.39
VPS50-204ENST00000438395 PIGCQ92535 297 aa6.37□□□□□ -1.39
VPS50-204ENST00000438395 CCDC124Q96CT7 223 aaKnown RBP6.37□□□□□ -1.39
VPS50-204ENST00000438395 SEH1LQ96EE3 360 aa6.37□□□□□ -1.39
VPS50-204ENST00000438395 CLPTM1LQ96KA5 538 aa6.37□□□□□ -1.39
VPS50-204ENST00000438395 RAB3IPQ96QF0 476 aaPredicted RBP6.37□□□□□ -1.39
VPS50-204ENST00000438395 DDOQ99489 341 aa6.37□□□□□ -1.39
VPS50-204ENST00000438395 WDR13Q9H1Z4 485 aa6.37□□□□□ -1.39
VPS50-204ENST00000438395 RAB18Q9NP72 206 aa6.37□□□□□ -1.39
VPS50-204ENST00000438395 ARL8BQ9NVJ2 186 aa6.37□□□□□ -1.39
VPS50-204ENST00000438395 NLKQ9UBE8 527 aa6.37□□□□□ -1.39
VPS50-204ENST00000438395 DUX4Q9UBX2 424 aa6.37□□□□□ -1.39
VPS50-204ENST00000438395 LAMP5Q9UJQ1 280 aa6.37□□□□□ -1.39
VPS50-204ENST00000438395 SF3B6Q9Y3B4 125 aaKnown RBP6.37□□□□□ -1.39
VPS50-204ENST00000438395 OR5B21A6NL26 309 aa6.36□□□□□ -1.39
VPS50-204ENST00000438395 OR2AT4A6NND4 320 aa6.36□□□□□ -1.39
VPS50-204ENST00000438395 RNASEK-C17orf49H0YIS7 233 aa6.36□□□□□ -1.39
VPS50-204ENST00000438395 H3BUX3 64 aa6.36□□□□□ -1.39
VPS50-204ENST00000438395 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP6.36□□□□□ -1.39
VPS50-204ENST00000438395 SLC1A7O00341 560 aa6.36□□□□□ -1.39
VPS50-204ENST00000438395 SIGLEC5O15389 551 aa6.36□□□□□ -1.39
VPS50-204ENST00000438395 PRODHO43272 600 aa6.36□□□□□ -1.39
VPS50-204ENST00000438395 SELENOFO60613 162 aa6.36□□□□□ -1.39
VPS50-204ENST00000438395 TSPAN15O95858 294 aa6.36□□□□□ -1.39
VPS50-204ENST00000438395 CST4P01036 141 aa6.36□□□□□ -1.39
VPS50-204ENST00000438395 CST1P01037 141 aa6.36□□□□□ -1.39
VPS50-204ENST00000438395 HMGN1P05114 100 aa6.36□□□□□ -1.39
VPS50-204ENST00000438395 RAP2AP10114 183 aa6.36□□□□□ -1.39
VPS50-204ENST00000438395 SELLP14151 372 aa6.36□□□□□ -1.39
VPS50-204ENST00000438395 HOXB6P17509 224 aaKnown RBP6.36□□□□□ -1.39
VPS50-204ENST00000438395 TGM4P49221 684 aa6.36□□□□□ -1.39
VPS50-204ENST00000438395 LGALS4P56470 323 aa6.36□□□□□ -1.39
VPS50-204ENST00000438395 CAV3P56539 151 aa6.36□□□□□ -1.39
VPS50-204ENST00000438395 GNGT1P63211 74 aa6.36□□□□□ -1.39
VPS50-204ENST00000438395 ELF3P78545 371 aaPredicted RBP6.36□□□□□ -1.39
VPS50-204ENST00000438395 PRB3Q04118 309 aaPredicted RBP6.36□□□□□ -1.39
VPS50-204ENST00000438395 ZNF829Q3KNS6 432 aaPredicted RBP6.36□□□□□ -1.39
VPS50-204ENST00000438395 ATPAF1Q5TC12 328 aaPredicted RBP6.36□□□□□ -1.39
VPS50-204ENST00000438395 LINC01590Q5TEZ4 76 aa6.36□□□□□ -1.39
VPS50-204ENST00000438395 LCN1P1Q5VSP4 162 aa6.36□□□□□ -1.39
VPS50-204ENST00000438395 PLCXD3Q63HM9 321 aa6.36□□□□□ -1.39
VPS50-204ENST00000438395 LCN8Q6JVE9 175 aa6.36□□□□□ -1.39
VPS50-204ENST00000438395 PLBD1Q6P4A8 553 aa6.36□□□□□ -1.39
VPS50-204ENST00000438395 C1orf122Q6ZSJ8 110 aa6.36□□□□□ -1.39
VPS50-204ENST00000438395 Q6ZSV7 163 aa6.36□□□□□ -1.39
VPS50-204ENST00000438395 C1QL4Q86Z23 238 aa6.36□□□□□ -1.39
VPS50-204ENST00000438395 FGFRL1Q8N441 504 aa6.36□□□□□ -1.39
VPS50-204ENST00000438395 LY6G5BQ8NDX9 201 aa6.36□□□□□ -1.39
VPS50-204ENST00000438395 OR2T6Q8NHC8 308 aa6.36□□□□□ -1.39
VPS50-204ENST00000438395 OTOSQ8NHW6 89 aa6.36□□□□□ -1.39
VPS50-204ENST00000438395 C8orf46Q8TAG6 207 aa6.36□□□□□ -1.39
VPS50-204ENST00000438395 ZNF671Q8TAW3 534 aa6.36□□□□□ -1.39
VPS50-204ENST00000438395 OR5P3Q8WZ94 311 aa6.36□□□□□ -1.39
VPS50-204ENST00000438395 DUS3LQ96G46 650 aaKnown RBP6.36□□□□□ -1.39
VPS50-204ENST00000438395 GAFA1Q96PS6 74 aa6.36□□□□□ -1.39
VPS50-204ENST00000438395 NPFFR1Q9GZQ6 430 aa6.36□□□□□ -1.39
VPS50-204ENST00000438395 TLNRD1Q9H1K6 362 aa6.36□□□□□ -1.39
VPS50-204ENST00000438395 C16orf95Q9H693 158 aa6.36□□□□□ -1.39
VPS50-204ENST00000438395 HEXA-AS1Q9H8Q6 139 aa6.36□□□□□ -1.39
VPS50-204ENST00000438395 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP6.36□□□□□ -1.39
VPS50-204ENST00000438395 GTF2A1LQ9UNN4 478 aa6.36□□□□□ -1.39
VPS50-204ENST00000438395 NOTCH3Q9UM47 2321 aa6.35□□□□□ -1.39
VPS50-204ENST00000438395 ARRDC5A6NEK1 342 aa6.35□□□□□ -1.39
VPS50-204ENST00000438395 B2RBV5 119 aa6.35□□□□□ -1.39
VPS50-204ENST00000438395 ATP8B1O43520 1251 aa6.35□□□□□ -1.39
VPS50-204ENST00000438395 TSPAN9O75954 239 aa6.35□□□□□ -1.39
VPS50-204ENST00000438395 ACAA1P09110 424 aaPredicted RBP6.35□□□□□ -1.39
VPS50-204ENST00000438395 ACKR3P25106 362 aa6.35□□□□□ -1.39
VPS50-204ENST00000438395 ESRRGP62508 458 aa6.35□□□□□ -1.39
VPS50-204ENST00000438395 TRIM25Q14258 630 aaKnown RBP6.35□□□□□ -1.39
VPS50-204ENST00000438395 HERPUD1Q15011 391 aa6.35□□□□□ -1.39
VPS50-204ENST00000438395 LY6EQ16553 131 aa6.35□□□□□ -1.39
VPS50-204ENST00000438395 DGUOKQ16854 277 aa6.35□□□□□ -1.39
VPS50-204ENST00000438395 LRRC75BQ2VPJ9 315 aa6.35□□□□□ -1.39
VPS50-204ENST00000438395 ZNF684Q5T5D7 378 aa6.35□□□□□ -1.39
VPS50-204ENST00000438395 KCTD18Q6PI47 426 aaPredicted RBP6.35□□□□□ -1.39
VPS50-204ENST00000438395 CD300LDQ6UXZ3 194 aa6.35□□□□□ -1.39
VPS50-204ENST00000438395 ZNF788Q6ZQV5 615 aa6.35□□□□□ -1.39
VPS50-204ENST00000438395 PRSS45Q7RTY3 260 aa6.35□□□□□ -1.39
VPS50-204ENST00000438395 C11orf53Q8IXP5 236 aa6.35□□□□□ -1.39
VPS50-204ENST00000438395 PNKDQ8N490 385 aa6.35□□□□□ -1.39
VPS50-204ENST00000438395 BEND2Q8NDZ0 799 aa6.35□□□□□ -1.39
VPS50-204ENST00000438395 OR8B12Q8NGG6 310 aa6.35□□□□□ -1.39
VPS50-204ENST00000438395 ANGPTL6Q8NI99 470 aa6.35□□□□□ -1.39
VPS50-204ENST00000438395 ITFG2Q969R8 447 aa6.35□□□□□ -1.39
VPS50-204ENST00000438395 AMELYQ99218 206 aa6.35□□□□□ -1.39
VPS50-204ENST00000438395 FEVQ99581 238 aa6.35□□□□□ -1.39
VPS50-204ENST00000438395 NKX3-1Q99801 234 aaPredicted RBP6.35□□□□□ -1.39
VPS50-204ENST00000438395 SSX3Q99909 188 aa6.35□□□□□ -1.39
VPS50-204ENST00000438395 MROQ9BYG7 248 aa6.35□□□□□ -1.39
VPS50-204ENST00000438395 PRRG3Q9BZD7 231 aa6.35□□□□□ -1.39
VPS50-204ENST00000438395 WNT10AQ9GZT5 417 aa6.35□□□□□ -1.39
VPS50-204ENST00000438395 C1orf21Q9H246 121 aa6.35□□□□□ -1.39
VPS50-204ENST00000438395 YY1AP1Q9H869 796 aa6.35□□□□□ -1.39
VPS50-204ENST00000438395 ELL3Q9HB65 397 aaPredicted RBP6.35□□□□□ -1.39
VPS50-204ENST00000438395 VNN3Q9NY84 501 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms