RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 SPIN3Q5JUX0 258 aa11.7□□□□□ -0.54
VPS54-203ENST00000409558 RGS7BPQ6MZT1 257 aaPredicted RBP11.7□□□□□ -0.54
VPS54-203ENST00000409558 MYPOPQ86VE0 399 aaPredicted RBP11.7□□□□□ -0.54
VPS54-203ENST00000409558 CARFQ8N187 725 aa11.7□□□□□ -0.54
VPS54-203ENST00000409558 SLC25A43Q8WUT9 341 aaPredicted RBP11.7□□□□□ -0.54
VPS54-203ENST00000409558 RRNAD1Q96FB5 475 aaKnown RBP11.7□□□□□ -0.54
VPS54-203ENST00000409558 TCFL5Q9UL49 500 aa11.7□□□□□ -0.54
VPS54-203ENST00000409558 FAM96BQ9Y3D0 163 aa11.7□□□□□ -0.54
VPS54-203ENST00000409558 BET1O15155 118 aa11.7□□□□□ -0.54
VPS54-203ENST00000409558 RSPO1Q2MKA7 263 aaPredicted RBP11.7□□□□□ -0.54
VPS54-203ENST00000409558 PGAP1Q75T13 922 aa11.7□□□□□ -0.54
VPS54-203ENST00000409558 SEMA6DQ8NFY4 1073 aa11.7□□□□□ -0.54
VPS54-203ENST00000409558 IMMP1LQ96LU5 166 aa11.7□□□□□ -0.54
VPS54-203ENST00000409558 SEMA5BQ9P283 1151 aa11.7□□□□□ -0.54
VPS54-203ENST00000409558 A0A1W2PNV4 684 aa11.7□□□□□ -0.54
VPS54-203ENST00000409558 SULT1C2O00338 296 aa11.7□□□□□ -0.54
VPS54-203ENST00000409558 TOX3O15405 576 aaPredicted RBP11.7□□□□□ -0.54
VPS54-203ENST00000409558 PSMB6P28072 239 aa11.7□□□□□ -0.54
VPS54-203ENST00000409558 FNDC9Q8TBE3 224 aa11.7□□□□□ -0.54
VPS54-203ENST00000409558 CT55Q8WUE5 264 aa11.7□□□□□ -0.54
VPS54-203ENST00000409558 CMSS1Q9BQ75 279 aaKnown RBP11.7□□□□□ -0.54
VPS54-203ENST00000409558 SLCO5A1Q9H2Y9 848 aa11.7□□□□□ -0.54
VPS54-203ENST00000409558 RNF222A6NCQ9 220 aa11.69□□□□□ -0.54
VPS54-203ENST00000409558 DHRS3O75911 302 aa11.69□□□□□ -0.54
VPS54-203ENST00000409558 CYB561P49447 251 aa11.69□□□□□ -0.54
VPS54-203ENST00000409558 GRB2P62993 217 aaKnown RBP11.69□□□□□ -0.54
VPS54-203ENST00000409558 QRFPP83859 136 aa11.69□□□□□ -0.54
VPS54-203ENST00000409558 TGIF1Q15583 401 aa11.69□□□□□ -0.54
VPS54-203ENST00000409558 GLRX5Q86SX6 157 aa11.69□□□□□ -0.54
VPS54-203ENST00000409558 ZIC4Q8N9L1 334 aa11.69□□□□□ -0.54
VPS54-203ENST00000409558 DHRS9Q9BPW9 319 aa11.69□□□□□ -0.54
VPS54-203ENST00000409558 UQCC2Q9BRT2 126 aa11.69□□□□□ -0.54
VPS54-203ENST00000409558 PECRQ9BY49 303 aa11.69□□□□□ -0.54
VPS54-203ENST00000409558 ESRP2Q9H6T0 727 aaKnown RBP11.69□□□□□ -0.54
VPS54-203ENST00000409558 MTRF1O75570 445 aaKnown RBP11.69□□□□□ -0.54
VPS54-203ENST00000409558 CBR3O75828 277 aa11.69□□□□□ -0.54
VPS54-203ENST00000409558 RPA2P15927 270 aa11.69□□□□□ -0.54
VPS54-203ENST00000409558 IAH1Q2TAA2 248 aaPredicted RBP11.69□□□□□ -0.54
VPS54-203ENST00000409558 TMPRSS7Q7RTY8 843 aa11.69□□□□□ -0.54
VPS54-203ENST00000409558 C1orf210Q8IVY1 113 aa11.69□□□□□ -0.54
VPS54-203ENST00000409558 ACACAQ13085 2346 aa11.69□□□□□ -0.54
VPS54-203ENST00000409558 AKR1C3P42330 323 aa11.69□□□□□ -0.54
VPS54-203ENST00000409558 MC2RQ01718 297 aa11.69□□□□□ -0.54
VPS54-203ENST00000409558 IL11RAQ14626 422 aa11.69□□□□□ -0.54
VPS54-203ENST00000409558 SLC25A26Q70HW3 274 aa11.69□□□□□ -0.54
VPS54-203ENST00000409558 OR5M9Q8NGP3 310 aa11.69□□□□□ -0.54
VPS54-203ENST00000409558 OR11L1Q8NGX0 322 aa11.69□□□□□ -0.54
VPS54-203ENST00000409558 PCDHB10Q9UN67 800 aa11.69□□□□□ -0.54
VPS54-203ENST00000409558 C14orf166Q9Y224 244 aaKnown RBP11.69□□□□□ -0.54
VPS54-203ENST00000409558 H0YIZ8 118 aa11.69□□□□□ -0.54
VPS54-203ENST00000409558 MPGP29372 298 aa11.69□□□□□ -0.54
VPS54-203ENST00000409558 CEBPGP53567 150 aa11.69□□□□□ -0.54
VPS54-203ENST00000409558 ZNF92Q03936 586 aa11.69□□□□□ -0.54
VPS54-203ENST00000409558 ABCA11PQ4W5N1 156 aa11.69□□□□□ -0.54
VPS54-203ENST00000409558 CD74P04233 296 aa11.68□□□□□ -0.54
VPS54-203ENST00000409558 OMGP23515 440 aa11.68□□□□□ -0.54
VPS54-203ENST00000409558 AGTR1P30556 359 aa11.68□□□□□ -0.54
VPS54-203ENST00000409558 SCAND1P57086 179 aa11.68□□□□□ -0.54
VPS54-203ENST00000409558 SNTB1Q13884 538 aaKnown RBP11.68□□□□□ -0.54
VPS54-203ENST00000409558 EXT1Q16394 746 aa11.68□□□□□ -0.54
VPS54-203ENST00000409558 JMJD6Q6NYC1 403 aaPredicted RBP11.68□□□□□ -0.54
VPS54-203ENST00000409558 SULF2Q8IWU5 870 aa11.68□□□□□ -0.54
VPS54-203ENST00000409558 IL22RA1Q8N6P7 574 aa11.68□□□□□ -0.54
VPS54-203ENST00000409558 C1orf147Q96MC9 270 aaPredicted RBP11.68□□□□□ -0.54
VPS54-203ENST00000409558 ZNF488Q96MN9 340 aa11.68□□□□□ -0.54
VPS54-203ENST00000409558 FOXB1Q99853 325 aa11.68□□□□□ -0.54
VPS54-203ENST00000409558 DEFB127Q9H1M4 99 aa11.68□□□□□ -0.54
VPS54-203ENST00000409558 IL36RNQ9UBH0 155 aa11.68□□□□□ -0.54
VPS54-203ENST00000409558 C5orf49A4QMS7 147 aa11.68□□□□□ -0.54
VPS54-203ENST00000409558 HMSDA8MTL9 139 aa11.68□□□□□ -0.54
VPS54-203ENST00000409558 ZNF587BE7ETH6 402 aa11.68□□□□□ -0.54
VPS54-203ENST00000409558 CHRM2P08172 466 aa11.68□□□□□ -0.54
VPS54-203ENST00000409558 NPBWR2P48146 333 aa11.68□□□□□ -0.54
VPS54-203ENST00000409558 SRSF3P84103 164 aaKnown RBP11.68□□□□□ -0.54
VPS54-203ENST00000409558 OR2A2Q6IF42 318 aa11.68□□□□□ -0.54
VPS54-203ENST00000409558 BPIFCQ8NFQ6 507 aa11.68□□□□□ -0.54
VPS54-203ENST00000409558 MITD1Q8WV92 249 aa11.68□□□□□ -0.54
VPS54-203ENST00000409558 TMEM230Q96A57 120 aa11.68□□□□□ -0.54
VPS54-203ENST00000409558 SIGLEC12Q96PQ1 595 aa11.68□□□□□ -0.54
VPS54-203ENST00000409558 COL4A2P08572 1712 aa11.68□□□□□ -0.54
VPS54-203ENST00000409558 LOC390937A0A1W2PQ73 354 aa11.68□□□□□ -0.54
VPS54-203ENST00000409558 GPR31O00270 319 aa11.68□□□□□ -0.54
VPS54-203ENST00000409558 CD63P08962 238 aa11.68□□□□□ -0.54
VPS54-203ENST00000409558 FGF5P12034 268 aa11.68□□□□□ -0.54
VPS54-203ENST00000409558 RAB6AP20340 208 aa11.68□□□□□ -0.54
VPS54-203ENST00000409558 MAGEA5P43359 124 aa11.68□□□□□ -0.54
VPS54-203ENST00000409558 PSG4Q00888 419 aa11.68□□□□□ -0.54
VPS54-203ENST00000409558 ECH1Q13011 328 aa11.68□□□□□ -0.54
VPS54-203ENST00000409558 SLC22A25Q6T423 547 aa11.68□□□□□ -0.54
VPS54-203ENST00000409558 SKA3Q8IX90 412 aa11.68□□□□□ -0.54
VPS54-203ENST00000409558 FADS6Q8N9I5 356 aa11.68□□□□□ -0.54
VPS54-203ENST00000409558 ZSCAN4Q8NAM6 433 aaPredicted RBP11.68□□□□□ -0.54
VPS54-203ENST00000409558 FOXJ2Q9P0K8 574 aa11.68□□□□□ -0.54
VPS54-203ENST00000409558 NOSIPQ9Y314 301 aaKnown RBP11.68□□□□□ -0.54
VPS54-203ENST00000409558 CPAMD8Q8IZJ3 1885 aa11.67□□□□□ -0.54
VPS54-203ENST00000409558 EIF1BO60739 113 aaKnown RBP11.67□□□□□ -0.54
VPS54-203ENST00000409558 MRPL33O75394 65 aaKnown RBP11.67□□□□□ -0.54
VPS54-203ENST00000409558 TMEM128Q5BJH2 165 aa11.67□□□□□ -0.54
VPS54-203ENST00000409558 PABPC1L2AQ5JQF8 200 aa11.67□□□□□ -0.54
VPS54-203ENST00000409558 DNM1P46Q6ZS02 220 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms