RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 PDCL2Q8N4E4 241 aa1.14□□□□□ -2.23
VPS13A-206ENST00000376646 GATSQ8NAP1 163 aa1.14□□□□□ -2.23
VPS13A-206ENST00000376646 DEDD2Q8WXF8 326 aa1.14□□□□□ -2.23
VPS13A-206ENST00000376646 RMI2Q96E14 147 aa1.14□□□□□ -2.23
VPS13A-206ENST00000376646 SNF8Q96H20 258 aa1.14□□□□□ -2.23
VPS13A-206ENST00000376646 C20orf144Q9BQM9 153 aa1.14□□□□□ -2.23
VPS13A-206ENST00000376646 MAP1LC3CQ9BXW4 147 aa1.14□□□□□ -2.23
VPS13A-206ENST00000376646 BEX2Q9BXY8 128 aa1.14□□□□□ -2.23
VPS13A-206ENST00000376646 ZNF717Q9BY31 904 aaPredicted RBP1.14□□□□□ -2.23
VPS13A-206ENST00000376646 PLEKHF2Q9H8W4 249 aa1.14□□□□□ -2.23
VPS13A-206ENST00000376646 C6orf50Q9HD87 102 aa1.14□□□□□ -2.23
VPS13A-206ENST00000376646 CA10Q9NS85 328 aa1.14□□□□□ -2.23
VPS13A-206ENST00000376646 AK9Q5TCS8 1911 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 TRAV8-7A0A075B6U6 113 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 LOC102724200A0A096LPH7 203 aaPredicted RBP1.13□□□□□ -2.23
VPS13A-206ENST00000376646 FAM240AA0A1B0GVK7 77 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 ANKRD20A5PA0PJZ0 165 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 CEACAM18A8MTB9 384 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 A8MUU9 505 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 SEC14L6B5MCN3 397 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 SCO1O75880 301 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 CDRT1O95170 752 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 IGKV1-17P01599 117 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 RHOCP08134 193 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 MMP7P09237 267 aaPredicted RBP1.13□□□□□ -2.23
VPS13A-206ENST00000376646 CCDC172P0C7W6 258 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 LIPCP11150 499 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 ZNF14P17017 642 aaPredicted RBP1.13□□□□□ -2.23
VPS13A-206ENST00000376646 PSMB5P28074 263 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 DEKP35659 375 aaKnown RBP1.13□□□□□ -2.23
VPS13A-206ENST00000376646 ELF3P78545 371 aaPredicted RBP1.13□□□□□ -2.23
VPS13A-206ENST00000376646 DYNC1I2Q13409 638 aaKnown RBP1.13□□□□□ -2.23
VPS13A-206ENST00000376646 TAL2Q16559 108 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 FAM222AQ5U5X8 452 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 HHATQ5VTY9 493 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 IGFL1Q6UW32 110 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 PID1Q7Z2X4 250 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 STK40Q8N2I9 435 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 OR2Z1Q8NG97 314 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 SFXN5Q8TD22 340 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 HGDQ93099 445 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 WDR34Q96EX3 536 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 ZFP3Q96NJ6 502 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 SIKE1Q9BRV8 207 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 HINT2Q9BX68 163 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 STMN4Q9H169 189 aaPredicted RBP1.13□□□□□ -2.23
VPS13A-206ENST00000376646 ZSCAN16Q9H4T2 348 aaPredicted RBP1.13□□□□□ -2.23
VPS13A-206ENST00000376646 CFL2Q9Y281 166 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 ORC6Q9Y5N6 252 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 ENPP4Q9Y6X5 453 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 COL27A1Q8IZC6 1860 aaPredicted RBP1.13□□□□□ -2.23
VPS13A-206ENST00000376646 SYNRGQ9UMZ2 1314 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 IGHV6-1A0A0B4J1U7 121 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 CENPBD1B2RD01 187 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 NDUFS8O00217 210 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 NDUFS5O43920 106 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 ALOX12BO75342 701 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 SC5DO75845 299 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 S100A9P06702 114 aaKnown RBP1.13□□□□□ -2.23
VPS13A-206ENST00000376646 OR5AL1P0C617 328 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 PRSS3P35030 304 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 ARR3P36575 388 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 TGFBR1P36897 503 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 GRB2P62993 217 aaKnown RBP1.13□□□□□ -2.23
VPS13A-206ENST00000376646 IL5RAQ01344 420 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 FUT5Q11128 374 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 DNLZQ5SXM8 178 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 DEGS2Q6QHC5 323 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 ORMDL3Q8N138 153 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 SLC35G3Q8N808 338 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 SLC25A29Q8N8R3 303 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 SPANXA2-OT1Q8N9U9 137 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 ST20-AS1Q8NBB2 130 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 OR5M1Q8NGP8 315 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 LRRC39Q96DD0 335 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 SMARCD1Q96GM5 515 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 IP6K3Q96PC2 410 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 RHOXF2Q9BQY4 288 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 PRRG3Q9BZD7 231 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 ULBP2Q9BZM5 246 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 PORCNQ9H237 461 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 CSNK1G1Q9HCP0 422 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 STMN3Q9NZ72 180 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 RAB23Q9ULC3 237 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 WIF1Q9Y5W5 379 aa1.13□□□□□ -2.23
VPS13A-206ENST00000376646 JCADQ9P266 1359 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 TICRRQ7Z2Z1 1910 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 IGKV1-6A0A0C4DH72 117 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 GSTTP1A0A1W2PQM5 241 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 ENSAO43768 121 aaKnown RBP1.12□□□□□ -2.23
VPS13A-206ENST00000376646 IGKV1-39P01597 117 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 MAS1P04201 325 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 IGKV1D-39P04432 117 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 NTF3P20783 257 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 ADIGQ0VDE8 80 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 LAMTOR4Q0VGL1 99 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 MAD2L1BPQ15013 274 aaPredicted RBP1.12□□□□□ -2.23
VPS13A-206ENST00000376646 TTC32Q5I0X7 151 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 APOBEC3HQ6NTF7 200 aaKnown RBP1.12□□□□□ -2.23
VPS13A-206ENST00000376646 PDPNQ86YL7 162 aa1.12□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms