RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 ZNF404Q494X3 552 aa13.32□□□□□ -0.28
CCDC28A-201ENST00000332797 RNLSQ5VYX0 342 aa13.32□□□□□ -0.28
CCDC28A-201ENST00000332797 HAGHLQ6PII5 290 aaPredicted RBP13.32□□□□□ -0.28
CCDC28A-201ENST00000332797 LINC01356Q8N9X3 169 aa13.32□□□□□ -0.28
CCDC28A-201ENST00000332797 RGP1Q92546 391 aaPredicted RBP13.32□□□□□ -0.28
CCDC28A-201ENST00000332797 C1orf159Q96HA4 380 aa13.32□□□□□ -0.28
CCDC28A-201ENST00000332797 TECTBQ96PL2 329 aa13.32□□□□□ -0.28
CCDC28A-201ENST00000332797 TMEM246Q9BRR3 403 aa13.32□□□□□ -0.28
CCDC28A-201ENST00000332797 BLOC1S6Q9UL45 172 aa13.32□□□□□ -0.28
CCDC28A-201ENST00000332797 YLPM1P49750 1951 aaKnown RBP13.32□□□□□ -0.28
CCDC28A-201ENST00000332797 IGHV3OR15-7A0A075B7D8 119 aa13.31□□□□□ -0.28
CCDC28A-201ENST00000332797 OOEPA6NGQ2 149 aa13.31□□□□□ -0.28
CCDC28A-201ENST00000332797 LGALS8O00214 317 aa13.31□□□□□ -0.28
CCDC28A-201ENST00000332797 RHBDL1O75783 438 aa13.31□□□□□ -0.28
CCDC28A-201ENST00000332797 TGFAP01135 160 aa13.31□□□□□ -0.28
CCDC28A-201ENST00000332797 LHBP01229 141 aa13.31□□□□□ -0.28
CCDC28A-201ENST00000332797 EEF1B2P24534 225 aaKnown RBP13.31□□□□□ -0.28
CCDC28A-201ENST00000332797 HAAOP46952 286 aa13.31□□□□□ -0.28
CCDC28A-201ENST00000332797 SOX2P48431 317 aa13.31□□□□□ -0.28
CCDC28A-201ENST00000332797 DMKNQ6E0U4 476 aaPredicted RBP13.31□□□□□ -0.28
CCDC28A-201ENST00000332797 ZNF573Q86YE8 665 aa13.31□□□□□ -0.28
CCDC28A-201ENST00000332797 OR10Z1Q8NGY1 313 aa13.31□□□□□ -0.28
CCDC28A-201ENST00000332797 GPR148Q8TDV2 347 aa13.31□□□□□ -0.28
CCDC28A-201ENST00000332797 PATZ1Q9HBE1 687 aaKnown RBP13.31□□□□□ -0.28
CCDC28A-201ENST00000332797 ZNF281Q9Y2X9 895 aa13.31□□□□□ -0.28
CCDC28A-201ENST00000332797 ABCA2Q9BZC7 2435 aa13.31□□□□□ -0.28
CCDC28A-201ENST00000332797 B4DSR2 109 aa13.3□□□□□ -0.28
CCDC28A-201ENST00000332797 AKR7A2O43488 359 aa13.3□□□□□ -0.28
CCDC28A-201ENST00000332797 FSTL3O95633 263 aa13.3□□□□□ -0.28
CCDC28A-201ENST00000332797 OCM2P0CE71 109 aa13.3□□□□□ -0.28
CCDC28A-201ENST00000332797 OCMP0CE72 109 aaPredicted RBP13.3□□□□□ -0.28
CCDC28A-201ENST00000332797 RPS2P15880 293 aaKnown RBP13.3□□□□□ -0.28
CCDC28A-201ENST00000332797 FUT6P51993 359 aa13.3□□□□□ -0.28
CCDC28A-201ENST00000332797 IRF3Q14653 427 aa13.3□□□□□ -0.28
CCDC28A-201ENST00000332797 FAM166AQ6J272 317 aa13.3□□□□□ -0.28
CCDC28A-201ENST00000332797 UTS2BQ765I0 119 aa13.3□□□□□ -0.28
CCDC28A-201ENST00000332797 OR13C5Q8NGS8 318 aa13.3□□□□□ -0.28
CCDC28A-201ENST00000332797 OR13C9Q8NGT0 318 aa13.3□□□□□ -0.28
CCDC28A-201ENST00000332797 AQP3Q92482 292 aa13.3□□□□□ -0.28
CCDC28A-201ENST00000332797 GHSRQ92847 366 aa13.3□□□□□ -0.28
CCDC28A-201ENST00000332797 BORCS8Q96FH0 119 aa13.3□□□□□ -0.28
CCDC28A-201ENST00000332797 OR5M11Q96RB7 305 aa13.3□□□□□ -0.28
CCDC28A-201ENST00000332797 LSM2Q9Y333 95 aaKnown RBP13.3□□□□□ -0.28
CCDC28A-201ENST00000332797 MTORP42345 2549 aa13.3□□□□□ -0.28
CCDC28A-201ENST00000332797 TLN2Q9Y4G6 2542 aa13.3□□□□□ -0.28
CCDC28A-201ENST00000332797 CSPG4Q6UVK1 2322 aa13.3□□□□□ -0.28
CCDC28A-201ENST00000332797 TRAV38-1A0A0B4J264 116 aa13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 IGKV1-9A0A0C4DH69 117 aa13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 SRRM5B3KS81 715 aa13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 F5H0A9 414 aaPredicted RBP13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 J3QT63 122 aa13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 SYNGR1O43759 233 aa13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 ATF1P18846 271 aa13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 CELP19835 753 aa13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 CFHR2P36980 270 aa13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 SEC61A1P61619 476 aaKnown RBP13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 MED22Q15528 200 aa13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 KCNJ8Q15842 424 aa13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 DCDC5Q6ZRR9 648 aa13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 PRSS48Q7RTY5 328 aa13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 ANGPTL5Q86XS5 388 aa13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 FAM90A1Q86YD7 464 aa13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 OR51F2Q8NH61 342 aa13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 ZNF671Q8TAW3 534 aa13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 SEH1LQ96EE3 360 aa13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 PGLYRP3Q96LB9 341 aa13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 ZCCHC4Q9H5U6 513 aa13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 MIOXQ9UGB7 285 aa13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 KCNS2Q9ULS6 477 aa13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 ABCA1O95477 2261 aa13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 IGKV1-27A0A075B6S5 117 aa13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 A8MV72 311 aaPredicted RBP13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 PLATP00750 562 aa13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 GYPAP02724 150 aa13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 CD2P06729 351 aa13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 MSMBP08118 114 aa13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 PRKACBP22694 351 aa13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 AZGP1P25311 298 aaKnown RBP13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 BDH1Q02338 343 aa13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 SPHARQ15513 63 aa13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 MICBQ29980 383 aa13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 TEX36Q5VZQ5 186 aa13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 LYPD2Q6UXB3 125 aa13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 GLCCI1Q86VQ1 547 aa13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 CALHM1Q8IU99 346 aa13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 SERPINA12Q8IW75 414 aa13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 WDR13Q9H1Z4 485 aa13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 DNAJB11Q9UBS4 358 aa13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 POLDIP2Q9Y2S7 368 aa13.29□□□□□ -0.28
CCDC28A-201ENST00000332797 INAFM1C9JVW0 142 aa13.28□□□□□ -0.28
CCDC28A-201ENST00000332797 PLPP2O43688 288 aa13.28□□□□□ -0.28
CCDC28A-201ENST00000332797 WNT2P09544 360 aa13.28□□□□□ -0.28
CCDC28A-201ENST00000332797 MUC1P15941 1255 aaPredicted RBP13.28□□□□□ -0.28
CCDC28A-201ENST00000332797 GLRA1P23415 457 aa13.28□□□□□ -0.28
CCDC28A-201ENST00000332797 MAP2K4P45985 399 aa13.28□□□□□ -0.28
CCDC28A-201ENST00000332797 RBP2P50120 134 aa13.28□□□□□ -0.28
CCDC28A-201ENST00000332797 ATP1B3P54709 279 aa13.28□□□□□ -0.28
CCDC28A-201ENST00000332797 GABARAPL2P60520 117 aa13.28□□□□□ -0.28
CCDC28A-201ENST00000332797 LCN2P80188 198 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms