RNA–Protein interactions for RNA: ENST00000270061.11

SSBP4-201, Transcript of single stranded DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SSBP4, Length 1,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-201ENST00000270061 RAB6AP20340 208 aa21.1■□□□□ 0.97
SSBP4-201ENST00000270061 HOXC12P31275 282 aa21.1■□□□□ 0.97
SSBP4-201ENST00000270061 NKX6-1P78426 367 aaPredicted RBP21.1■□□□□ 0.97
SSBP4-201ENST00000270061 MRPS10P82664 201 aaKnown RBP21.1■□□□□ 0.97
SSBP4-201ENST00000270061 TMEM69Q5SWH9 247 aa21.1■□□□□ 0.97
SSBP4-201ENST00000270061 FBLN5Q9UBX5 448 aa21.1■□□□□ 0.97
SSBP4-201ENST00000270061 hCG_2014768A0A024R1R8 64 aa21.1■□□□□ 0.97
SSBP4-201ENST00000270061 C5orf49A4QMS7 147 aa21.1■□□□□ 0.97
SSBP4-201ENST00000270061 SERPINA5P05154 406 aa21.1■□□□□ 0.97
SSBP4-201ENST00000270061 ACKR3P25106 362 aa21.1■□□□□ 0.97
SSBP4-201ENST00000270061 EFNB2P52799 333 aa21.1■□□□□ 0.97
SSBP4-201ENST00000270061 FAM3AP98173 230 aa21.1■□□□□ 0.97
SSBP4-201ENST00000270061 TNK1Q13470 666 aa21.1■□□□□ 0.97
SSBP4-201ENST00000270061 OR8B8Q15620 311 aa21.1■□□□□ 0.97
SSBP4-201ENST00000270061 TMEM108Q6UXF1 575 aa21.1■□□□□ 0.97
SSBP4-201ENST00000270061 LRRC75A-AS1Q8N1F1 130 aa21.1■□□□□ 0.97
SSBP4-201ENST00000270061 LILRB1Q8NHL6 650 aaPredicted RBP21.1■□□□□ 0.97
SSBP4-201ENST00000270061 SMIM4Q8WVI0 70 aa21.1■□□□□ 0.97
SSBP4-201ENST00000270061 YIPF5Q969M3 257 aa21.1■□□□□ 0.97
SSBP4-201ENST00000270061 FBXW5Q969U6 566 aa21.1■□□□□ 0.97
SSBP4-201ENST00000270061 APOBEC3DQ96AK3 386 aaPredicted RBP21.1■□□□□ 0.97
SSBP4-201ENST00000270061 NKX3-1Q99801 234 aaPredicted RBP21.1■□□□□ 0.97
SSBP4-201ENST00000270061 DIABLOQ9NR28 239 aa21.1■□□□□ 0.97
SSBP4-201ENST00000270061 CD99P14209 185 aa21.09■□□□□ 0.97
SSBP4-201ENST00000270061 RFX2P48378 723 aa21.09■□□□□ 0.97
SSBP4-201ENST00000270061 ZNF83P51522 516 aa21.09■□□□□ 0.97
SSBP4-201ENST00000270061 ZNF92Q03936 586 aa21.09■□□□□ 0.97
SSBP4-201ENST00000270061 UBE2V2Q15819 145 aa21.09■□□□□ 0.97
SSBP4-201ENST00000270061 ZBTB37Q5TC79 503 aa21.09■□□□□ 0.97
SSBP4-201ENST00000270061 IZUMO1Q8IYV9 350 aa21.09■□□□□ 0.97
SSBP4-201ENST00000270061 TMEM171Q8WVE6 324 aa21.09■□□□□ 0.97
SSBP4-201ENST00000270061 TMUB1Q9BVT8 246 aa21.09■□□□□ 0.97
SSBP4-201ENST00000270061 SLC22A4Q9H015 551 aa21.09■□□□□ 0.97
SSBP4-201ENST00000270061 C11orf54Q9H0W9 315 aaPredicted RBP21.09■□□□□ 0.97
SSBP4-201ENST00000270061 AMDHD2Q9Y303 409 aa21.09■□□□□ 0.97
SSBP4-201ENST00000270061 A0A0A6YYH2 397 aa21.08■□□□□ 0.97
SSBP4-201ENST00000270061 A6NJ64 397 aa21.08■□□□□ 0.97
SSBP4-201ENST00000270061 ABCD4O14678 606 aa21.08■□□□□ 0.97
SSBP4-201ENST00000270061 HCKP08631 526 aa21.08■□□□□ 0.97
SSBP4-201ENST00000270061 APLNRP35414 380 aa21.08■□□□□ 0.97
SSBP4-201ENST00000270061 INPP1P49441 399 aa21.08■□□□□ 0.97
SSBP4-201ENST00000270061 GSK3AP49840 483 aa21.08■□□□□ 0.97
SSBP4-201ENST00000270061 ZNF672Q499Z4 452 aaPredicted RBP21.08■□□□□ 0.97
SSBP4-201ENST00000270061 TMEM42Q69YG0 159 aa21.08■□□□□ 0.97
SSBP4-201ENST00000270061 CCBE1Q6UXH8 406 aaPredicted RBP21.08■□□□□ 0.97
SSBP4-201ENST00000270061 MDP1Q86V88 176 aa21.08■□□□□ 0.97
SSBP4-201ENST00000270061 WDR31Q8NA23 367 aa21.08■□□□□ 0.97
SSBP4-201ENST00000270061 WFDC11Q8NEX6 87 aa21.08■□□□□ 0.97
SSBP4-201ENST00000270061 RAB22AQ9UL26 194 aa21.08■□□□□ 0.97
SSBP4-201ENST00000270061 GABARAPH6UMI1 98 aa21.08■□□□□ 0.96
SSBP4-201ENST00000270061 LANCL1O43813 399 aa21.08■□□□□ 0.96
SSBP4-201ENST00000270061 SPNP16150 400 aa21.08■□□□□ 0.96
SSBP4-201ENST00000270061 TAS2R20P59543 309 aa21.08■□□□□ 0.96
SSBP4-201ENST00000270061 QRFPP83859 136 aa21.08■□□□□ 0.96
SSBP4-201ENST00000270061 C1QTNF12Q5T7M4 302 aa21.08■□□□□ 0.96
SSBP4-201ENST00000270061 SHEQ5VZ18 495 aa21.08■□□□□ 0.96
SSBP4-201ENST00000270061 NRARPQ7Z6K4 114 aa21.08■□□□□ 0.96
SSBP4-201ENST00000270061 ANGPTL5Q86XS5 388 aa21.08■□□□□ 0.96
SSBP4-201ENST00000270061 IGFBPL1Q8WX77 278 aa21.08■□□□□ 0.96
SSBP4-201ENST00000270061 NEUROG1Q92886 237 aa21.08■□□□□ 0.96
SSBP4-201ENST00000270061 RADILQ96JH8 1075 aa21.08■□□□□ 0.96
SSBP4-201ENST00000270061 KCNK15Q9H427 330 aa21.08■□□□□ 0.96
SSBP4-201ENST00000270061 SETD2Q9BYW2 2564 aaPredicted RBP21.07■□□□□ 0.96
SSBP4-201ENST00000270061 ZFHX3Q15911 3703 aa21.07■□□□□ 0.96
SSBP4-201ENST00000270061 GGT3PA6NGU5 568 aa21.07■□□□□ 0.96
SSBP4-201ENST00000270061 PTAFRP25105 342 aa21.07■□□□□ 0.96
SSBP4-201ENST00000270061 UBE2NP61088 152 aaKnown RBP21.07■□□□□ 0.96
SSBP4-201ENST00000270061 DGCR2P98153 550 aa21.07■□□□□ 0.96
SSBP4-201ENST00000270061 DNM1P46Q6ZS02 220 aa21.07■□□□□ 0.96
SSBP4-201ENST00000270061 BIVMQ86UB2 503 aa21.07■□□□□ 0.96
SSBP4-201ENST00000270061 PIAS4Q8N2W9 510 aaPredicted RBP21.07■□□□□ 0.96
SSBP4-201ENST00000270061 PERPQ96FX8 193 aa21.07■□□□□ 0.96
SSBP4-201ENST00000270061 REPIN1Q9BWE0 567 aaKnown RBP21.07■□□□□ 0.96
SSBP4-201ENST00000270061 C1QTNF6Q9BXI9 259 aa21.07■□□□□ 0.96
SSBP4-201ENST00000270061 LAMP3Q9UQV4 416 aa21.07■□□□□ 0.96
SSBP4-201ENST00000270061 LINC00854A0A1B0GVQ3 168 aa21.06■□□□□ 0.96
SSBP4-201ENST00000270061 CCNOP22674 350 aa21.06■□□□□ 0.96
SSBP4-201ENST00000270061 ALDH3B1P43353 468 aa21.06■□□□□ 0.96
SSBP4-201ENST00000270061 MZT2BQ6NZ67 158 aa21.06■□□□□ 0.96
SSBP4-201ENST00000270061 KRT74Q7RTS7 529 aa21.06■□□□□ 0.96
SSBP4-201ENST00000270061 SPSB1Q96BD6 273 aa21.06■□□□□ 0.96
SSBP4-201ENST00000270061 NEK6Q9HC98 313 aa21.06■□□□□ 0.96
SSBP4-201ENST00000270061 SHISA9B4DS77 424 aa21.05■□□□□ 0.96
SSBP4-201ENST00000270061 M0R1B8 84 aa21.05■□□□□ 0.96
SSBP4-201ENST00000270061 UBBP0CG47 229 aa21.05■□□□□ 0.96
SSBP4-201ENST00000270061 CCL2P13500 99 aa21.05■□□□□ 0.96
SSBP4-201ENST00000270061 ZNF14P17017 642 aaPredicted RBP21.05■□□□□ 0.96
SSBP4-201ENST00000270061 CD40P25942 277 aa21.05■□□□□ 0.96
SSBP4-201ENST00000270061 KISS1Q15726 138 aa21.05■□□□□ 0.96
SSBP4-201ENST00000270061 CLVS2Q5SYC1 327 aa21.05■□□□□ 0.96
SSBP4-201ENST00000270061 ZNF57Q68EA5 555 aaPredicted RBP21.05■□□□□ 0.96
SSBP4-201ENST00000270061 CRIP3Q6Q6R5 217 aa21.05■□□□□ 0.96
SSBP4-201ENST00000270061 OR2W3Q7Z3T1 314 aa21.05■□□□□ 0.96
SSBP4-201ENST00000270061 KRTAP1-3Q8IUG1 177 aa21.05■□□□□ 0.96
SSBP4-201ENST00000270061 PAQR4Q8N4S7 273 aaPredicted RBP21.05■□□□□ 0.96
SSBP4-201ENST00000270061 PHF21AQ96BD5 680 aa21.05■□□□□ 0.96
SSBP4-201ENST00000270061 ITPKCQ96DU7 683 aa21.05■□□□□ 0.96
SSBP4-201ENST00000270061 ATG5Q9H1Y0 275 aa21.05■□□□□ 0.96
SSBP4-201ENST00000270061 OPA3Q9H6K4 179 aa21.05■□□□□ 0.96
SSBP4-201ENST00000270061 GHRLQ9UBU3 117 aa21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms